9zmy
Crystal structure of the human Commd10 HN domain in domain swapped conformation
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9zmy |
| deposition_date | 2025-12-11 |
| last_revision | 2026-01-21 |
| title | Crystal structure of the human Commd10 HN domain in domain swapped conformation |
| keywords | COMMD, Commander, endosome, EXOCYTOSIS; EXOCYTOSIS |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 30.91 Å |
| rg_electron | 32.00 Å |
| i0 | 11415500.00 |
| molecular_weight | 25991.0 kDa |
| excluded_volume | 32773 ų |
| envelope_volume | 54710 ų |
| shell_volume | 17048 ų |
| envelope_diameter | 121.5 Å |
| shell_rg | 31.55 Å |
| envelope_rg | 32.91 Å |
| shape_rg | 31.89 Å |
| total_rg | 32.31 Å |
| total_atoms | 1833 |
| n_residues | 227 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 118.7 Å |
| rg_real | 31.68 Å |
| rg_real_error | 1.66 Å |
| i0_real | 1.1420e+07 |
| i0_real_error | 1.9510e+05 |
| rg_reciprocal | 31.34 Å |
| i0_reciprocal | 11410000.0000 |
| total_estimate | 0.7243 |
| solution_quality | REASONABLE a REASONABLE solution |
| n_peaks | 2 |
| r_peak_primary | 30.3 Å |
| skewness | 0.839 |
| kurtosis | 0.550 |
| angular_range | — – 0.2550 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 699400.0000 |
| n_real_points | 52 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.474; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.279; Smooth: 0.710 |