9zn0
Crystal structure of the Commd10 S50E HN domain mutant in domain swapped conformation
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9zn0 |
| deposition_date | 2025-12-11 |
| last_revision | 2026-01-21 |
| title | Crystal structure of the Commd10 S50E HN domain mutant in domain swapped conformation |
| keywords | Commander, COMMD, endosome, EXOCYTOSIS; EXOCYTOSIS |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 26.81 Å |
| rg_electron | 26.04 Å |
| i0 | 45661500.00 |
| molecular_weight | 52968.0 kDa |
| excluded_volume | 66768 ų |
| envelope_volume | 84700 ų |
| shell_volume | 28320 ų |
| envelope_diameter | 92.7 Å |
| shell_rg | 32.03 Å |
| envelope_rg | 25.80 Å |
| shape_rg | 26.02 Å |
| total_rg | 26.79 Å |
| total_atoms | 7512 |
| n_residues | 462 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 90.1 Å |
| rg_real | 26.83 Å |
| rg_real_error | 0.66 Å |
| i0_real | 4.5660e+07 |
| i0_real_error | 6.9650e+05 |
| rg_reciprocal | 26.82 Å |
| i0_reciprocal | 45660000.0000 |
| total_estimate | 0.8663 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 32.1 Å |
| skewness | 0.416 |
| kurtosis | -0.089 |
| angular_range | — – 0.2950 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 11900000.0000 |
| n_real_points | 60 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.827; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.965; Smooth: 0.812 |