Current Protein Identity:P52948
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Difference tags compare only the current result set; every original PDB and assembly record remains separate.
Related-Structure Differences
Each row represents one biological assembly in one PDB entry; multiple monomers of the same protein are listed separately.
| PDB Entry | Assembly / Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Non-polymers | Experimental Method | Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|---|
| 1KO6 Crystal Structure of C-terminal Autoproteolytic Domain of Nucleoporin Nup98 Deposited 2001-12-20 | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric(4) Consistent with protein count |
Chain A
678–863(186 aa)
Fragment:C-terminal Autoproteolytic Domain (Sequence database residues 677-863)
Chain B
864–920(57 aa)
Fragment:C-terminal Autoproteolytic Domain (Sequence database residues 864-920)
Chain C
678–863(186 aa)
Fragment:C-terminal Autoproteolytic Domain (Sequence database residues 677-863)
Chain D
864–920(57 aa)
Fragment:C-terminal Autoproteolytic Domain (Sequence database residues 864-920)
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.75;300 K;MgCl, PEG8000, Tris, pH 8.75, VAPOR DIFFUSION, HANGING DROP, temperature 300K
|
Resolution 3.00 Å R-free 0.271 |
| 2Q5X Crystal Structure of the C-terminal domain of hNup98 Deposited 2007-06-03 | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric(1) Consistent with protein count |
Chain A
733–887(155 aa)
Fragment:C-terminal domain, residues 733-887
|
Mutation:S881A | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;296 K;4.5M sodium formate, pH 4.6, vapor diffusion, hanging drop, temperature 296K
|
Resolution 1.90 Å R-free 0.229 |
| 2Q5Y Crystal Structure of the C-terminal domain of hNup98 Deposited 2007-06-03 | Assembly 1 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric(2) Consistent with protein count |
Chain A
729–880(152 aa)
Fragment:C-terminal domain, residues 729-880
Chain B
881–887(7 aa)
Fragment:residues 881-887
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.1;296 K;0.1M Tris, 0.2M MgAc2, 22% PEG8000, microseeding, pH 8.1, vapor diffusion, hanging drop, temperature 296K
|
Resolution 2.30 Å R-free 0.260 |
| 2Q5Y Crystal Structure of the C-terminal domain of hNup98 Deposited 2007-06-03 | Assembly 2 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric(2) Consistent with protein count |
Chain C
729–880(152 aa)
Fragment:C-terminal domain, residues 729-880
Chain D
881–887(7 aa)
Fragment:residues 881-887
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.1;296 K;0.1M Tris, 0.2M MgAc2, 22% PEG8000, microseeding, pH 8.1, vapor diffusion, hanging drop, temperature 296K
|
Resolution 2.30 Å R-free 0.260 |
| 3MMY Structural and functional analysis of the interaction between the nucleoporin Nup98 and the mRNA export factor Rae1 Deposited 2010-04-20 | Assembly 1 Protein heterocomplex Heteromer;Protein × 2 PDB declaration: dimeric(2) Consistent with protein count |
Chain B
158–213(56 aa)
Fragment:UNP residues 158-213
|
Not recorded | MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.65 Å R-free 0.237 |
| 3MMY Structural and functional analysis of the interaction between the nucleoporin Nup98 and the mRNA export factor Rae1 Deposited 2010-04-20 | Assembly 2 Protein heterocomplex Heteromer;Protein × 2 PDB declaration: dimeric(2) Consistent with protein count |
Chain D
158–213(56 aa)
Fragment:UNP residues 158-213
|
Not recorded | MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.65 Å R-free 0.237 |
| 3MMY Structural and functional analysis of the interaction between the nucleoporin Nup98 and the mRNA export factor Rae1 Deposited 2010-04-20 | Assembly 3 Protein heterocomplex Heteromer;Protein × 2 PDB declaration: dimeric(2) Consistent with protein count |
Chain F
158–213(56 aa)
Fragment:UNP residues 158-213
|
Not recorded | MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.65 Å R-free 0.237 |
| 3MMY Structural and functional analysis of the interaction between the nucleoporin Nup98 and the mRNA export factor Rae1 Deposited 2010-04-20 | Assembly 4 Protein heterocomplex Heteromer;Protein × 2 PDB declaration: dimeric(2) Consistent with protein count |
Chain H
158–213(56 aa)
Fragment:UNP residues 158-213
|
Not recorded | MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.65 Å R-free 0.237 |
| 4OWR Vesiculoviral matrix (M) protein occupies nucleic acid binding site at nucleoporin pair Rae1-Nup98 Deposited 2014-02-03 | Assembly 1 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count |
Chain B
157–213(57 aa)
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION;298 K;0.1 M HEPES pH 7.5, 11% PEG 10, 000, and 10% MPD
|
Resolution 3.15 Å R-free 0.289 |
| 5A9Q Human nuclear pore complex Deposited 2015-07-22 | Assembly 1 Protein heterocomplex Heteromer;Protein × 304 PDB declaration: 304-meric(304) Consistent with protein count |
Chain 5
881–1817(937 aa)
Chain E
881–1817(937 aa)
Chain N
881–1817(937 aa)
Chain W
881–1817(937 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
20MM TRIS, 0.2-0.4% TREHALOSE;pH 7.5;20MM TRIS, 0.2-0.4% TREHALOSE
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE;VITRIFICATION 1 -- CRYOGEN- ETHANE-PROPANE MIXTURE, INSTRUMENT- HOMEMADE PLUNGER,
|
Resolution 23.00 Å |
| 6BZM GFGNFGTS from low-complexity/FG repeat domain of Nup98, residues 116-123 Deposited 2017-12-24 | Assembly 1 Protein homooligomer Homooligomer;Protein × 10 PDB declaration: decameric(10) Consistent with protein count |
Chain A
116–123(8 aa)
Fragment:UNP residues 116-123
Chain B
116–123(8 aa)
Fragment:UNP residues 116-123
|
Not recorded | No recorded non-water small molecule | ELECTRON CRYSTALLOGRAPHY |
cryo-EM buffer
pH 9.5
cryo-EM vitrification conditions
Cryogen ETHANE
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 9.5;298 K;0.1 M CHES, pH 9.5, 10% ethanol
|
Resolution 0.90 Å R-free 0.264 |
| 7F60 Crystal structure of auxiliary protein in complex with human nuclear protein Deposited 2021-06-23 | Assembly 1 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count |
Chain D
1–1817(1817 aa)
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;296 K;0.1m Bis-tris ph5.5,45%PEG4000
|
Resolution 2.85 Å R-free 0.276 |
| 7F60 Crystal structure of auxiliary protein in complex with human nuclear protein Deposited 2021-06-23 | Assembly 2 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count |
Chain C
1–1817(1817 aa)
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;296 K;0.1m Bis-tris ph5.5,45%PEG4000
|
Resolution 2.85 Å R-free 0.276 |
| 7F90 Crystal structure of SARS auxiliary protein in complex with human nuclear protein Deposited 2021-07-03 | Assembly 1 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count |
Chain B
1–1817(1817 aa)
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;296 K;0.1m Bis-tris ph5.5,45%PEG4000
|
Resolution 2.39 Å R-free 0.258 |
| 7F90 Crystal structure of SARS auxiliary protein in complex with human nuclear protein Deposited 2021-07-03 | Assembly 2 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count |
Chain D
1–1817(1817 aa)
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;296 K;0.1m Bis-tris ph5.5,45%PEG4000
|
Resolution 2.39 Å R-free 0.258 |
| 7PEQ Model of the outer rings of the human nuclear pore complex Deposited 2021-08-11 | Assembly 1 Protein heterocomplex Heteromer;Protein × 288 PDB declaration: 288-meric(288) Consistent with protein count |
Chain AE
881–1817(937 aa)
Chain BE
881–1817(937 aa)
Chain CE
881–1817(937 aa)
Chain DE
881–1817(937 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE;Cells were grown on holey carbon, Au-mesh supports. Grids were rinsed briefly with PBS and manually blotted before plunging into liquid ethane.
|
Resolution 35.00 Å |
| 7Q64 Cryo-em structure of the Nup98 fibril polymorph 1 Deposited 2021-11-05 | Assembly 1 Protein homooligomer Homooligomer;Protein × 30 PDB declaration: 30-meric(30) Consistent with protein count |
Chain A
85–124(40 aa)
Chain B
85–124(40 aa)
Chain C
85–124(40 aa)
Chain D
85–124(40 aa)
Chain E
85–124(40 aa)
Chain F
85–124(40 aa)
Chain G
85–124(40 aa)
Chain H
85–124(40 aa)
Chain I
85–124(40 aa)
Chain J
85–124(40 aa)
Chain K
85–124(40 aa)
Chain L
85–124(40 aa)
Chain M
85–124(40 aa)
Chain N
85–124(40 aa)
Chain O
85–124(40 aa)
Chain P
85–124(40 aa)
Chain Q
85–124(40 aa)
Chain R
85–124(40 aa)
Chain S
85–124(40 aa)
Chain T
85–124(40 aa)
Chain U
85–124(40 aa)
Chain V
85–124(40 aa)
Chain W
85–124(40 aa)
Chain X
85–124(40 aa)
Chain Y
85–124(40 aa)
Chain Z
85–124(40 aa)
Chain a
85–124(40 aa)
Chain b
85–124(40 aa)
Chain c
85–124(40 aa)
Chain d
85–124(40 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.76 Å |
| 7Q65 Cryo-em structure of the Nup98 fibril polymorph 2 Deposited 2021-11-05 | Assembly 1 Protein homooligomer Homooligomer;Protein × 22 PDB declaration: 22-meric(22) Consistent with protein count |
Chain A
85–124(40 aa)
Chain B
85–124(40 aa)
Chain C
85–124(40 aa)
Chain D
85–124(40 aa)
Chain E
85–124(40 aa)
Chain F
85–124(40 aa)
Chain G
85–124(40 aa)
Chain H
85–124(40 aa)
Chain I
85–124(40 aa)
Chain J
85–124(40 aa)
Chain K
85–124(40 aa)
Chain L
85–124(40 aa)
Chain M
85–124(40 aa)
Chain N
85–124(40 aa)
Chain O
85–124(40 aa)
Chain P
85–124(40 aa)
Chain Q
85–124(40 aa)
Chain R
85–124(40 aa)
Chain S
85–124(40 aa)
Chain T
85–124(40 aa)
Chain U
85–124(40 aa)
Chain V
85–124(40 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.32 Å |
| 7Q66 Cryo-em structure of the Nup98 fibril polymorph 3 Deposited 2021-11-05 | Assembly 1 Protein homooligomer Homooligomer;Protein × 22 PDB declaration: 22-meric(22) Consistent with protein count |
Chain A
85–124(40 aa)
Chain B
85–124(40 aa)
Chain C
85–124(40 aa)
Chain D
85–124(40 aa)
Chain E
85–124(40 aa)
Chain F
85–124(40 aa)
Chain G
85–124(40 aa)
Chain H
85–124(40 aa)
Chain I
85–124(40 aa)
Chain J
85–124(40 aa)
Chain K
85–124(40 aa)
Chain L
85–124(40 aa)
Chain M
85–124(40 aa)
Chain N
85–124(40 aa)
Chain O
85–124(40 aa)
Chain P
85–124(40 aa)
Chain Q
85–124(40 aa)
Chain R
85–124(40 aa)
Chain S
85–124(40 aa)
Chain T
85–124(40 aa)
Chain U
85–124(40 aa)
Chain V
85–124(40 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.79 Å |
| 7Q67 Cryo-em structure of the Nup98 fibril polymorph 4 Deposited 2021-11-05 | Assembly 1 Protein homooligomer Homooligomer;Protein × 11 PDB declaration: undecameric(11) Consistent with protein count |
Chain A
85–124(40 aa)
Chain B
85–124(40 aa)
Chain C
85–124(40 aa)
Chain D
85–124(40 aa)
Chain E
85–124(40 aa)
Chain F
85–124(40 aa)
Chain G
85–124(40 aa)
Chain H
85–124(40 aa)
Chain I
85–124(40 aa)
Chain J
85–124(40 aa)
Chain K
85–124(40 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.37 Å |
| 7R5J Human nuclear pore complex (dilated) Deposited 2022-02-10 | Assembly 1 Protein heterocomplex Heteromer;Protein × 808 PDB declaration: 808-meric(808) Consistent with protein count |
Chain M0
881–1817(937 aa)
Chain M1
881–1817(937 aa)
Chain M2
881–1817(937 aa)
Chain M3
881–1817(937 aa)
Chain U0
1–880(880 aa)
Chain U1
1–880(880 aa)
Chain U2
1–880(880 aa)
Chain U3
1–880(880 aa)
Chain U4
1–880(880 aa)
Chain U5
1–880(880 aa)
Chain U6
1–880(880 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 50.00 Å |
| 7R5K Human nuclear pore complex (constricted) Deposited 2022-02-10 | Assembly 1 Protein heterocomplex Heteromer;Protein × 808 PDB declaration: 808-meric(808) Consistent with protein count |
Chain M0
881–1817(937 aa)
Chain M1
881–1817(937 aa)
Chain M2
881–1817(937 aa)
Chain M3
881–1817(937 aa)
Chain U0
1–880(880 aa)
Chain U1
1–880(880 aa)
Chain U2
1–880(880 aa)
Chain U3
1–880(880 aa)
Chain U4
1–880(880 aa)
Chain U5
1–880(880 aa)
Chain U6
1–880(880 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 12.00 Å |
| 7VPG Crystal structure of the C-terminal tail of SARS-CoV-1 Orf6 complex with human nucleoporin pair Rae1-Nup98 Deposited 2021-10-17 | Assembly 1 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count |
Chain B
158–213(56 aa)
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 5.5;293 K;100 mM Sodium citrate pH 5.5, 20% PEG 3350
|
Resolution 2.49 Å R-free 0.231 |
| 7VPG Crystal structure of the C-terminal tail of SARS-CoV-1 Orf6 complex with human nucleoporin pair Rae1-Nup98 Deposited 2021-10-17 | Assembly 2 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count |
Chain D
158–213(56 aa)
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 5.5;293 K;100 mM Sodium citrate pH 5.5, 20% PEG 3350
|
Resolution 2.49 Å R-free 0.231 |
| 7VPG Crystal structure of the C-terminal tail of SARS-CoV-1 Orf6 complex with human nucleoporin pair Rae1-Nup98 Deposited 2021-10-17 | Assembly 3 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count |
Chain F
158–213(56 aa)
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 5.5;293 K;100 mM Sodium citrate pH 5.5, 20% PEG 3350
|
Resolution 2.49 Å R-free 0.231 |
| 7VPG Crystal structure of the C-terminal tail of SARS-CoV-1 Orf6 complex with human nucleoporin pair Rae1-Nup98 Deposited 2021-10-17 | Assembly 4 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count |
Chain H
158–213(56 aa)
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 5.5;293 K;100 mM Sodium citrate pH 5.5, 20% PEG 3350
|
Resolution 2.49 Å R-free 0.231 |
| 7VPH Crystal structure of the C-terminal tail of SARS-CoV-2 Orf6 complex with human nucleoporin pair Rae1-Nup98 Deposited 2021-10-17 | Assembly 1 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count |
Chain B
158–213(56 aa)
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;100 mM Sodium citrate pH 5.5, 20% PEG 3350
|
Resolution 2.80 Å R-free 0.244 |
| 7VPH Crystal structure of the C-terminal tail of SARS-CoV-2 Orf6 complex with human nucleoporin pair Rae1-Nup98 Deposited 2021-10-17 | Assembly 2 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count |
Chain D
158–213(56 aa)
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;100 mM Sodium citrate pH 5.5, 20% PEG 3350
|
Resolution 2.80 Å R-free 0.244 |
| 7VPH Crystal structure of the C-terminal tail of SARS-CoV-2 Orf6 complex with human nucleoporin pair Rae1-Nup98 Deposited 2021-10-17 | Assembly 3 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count |
Chain F
158–213(56 aa)
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;100 mM Sodium citrate pH 5.5, 20% PEG 3350
|
Resolution 2.80 Å R-free 0.244 |
| 7VPH Crystal structure of the C-terminal tail of SARS-CoV-2 Orf6 complex with human nucleoporin pair Rae1-Nup98 Deposited 2021-10-17 | Assembly 4 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count |
Chain H
158–213(56 aa)
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;100 mM Sodium citrate pH 5.5, 20% PEG 3350
|
Resolution 2.80 Å R-free 0.244 |
| 8CI8 Cryo-EM structure of the Nup98(298-327) fibril Deposited 2023-02-09 | Assembly 1 Protein homooligomer Homooligomer;Protein × 25 PDB declaration: 25-meric(25) Consistent with protein count |
Chain A
298–327(30 aa)
Chain B
298–327(30 aa)
Chain C
298–327(30 aa)
Chain D
298–327(30 aa)
Chain E
298–327(30 aa)
Chain F
298–327(30 aa)
Chain G
298–327(30 aa)
Chain H
298–327(30 aa)
Chain I
298–327(30 aa)
Chain J
298–327(30 aa)
Chain K
298–327(30 aa)
Chain L
298–327(30 aa)
Chain M
298–327(30 aa)
Chain N
298–327(30 aa)
Chain O
298–327(30 aa)
Chain P
298–327(30 aa)
Chain Q
298–327(30 aa)
Chain R
298–327(30 aa)
Chain S
298–327(30 aa)
Chain T
298–327(30 aa)
Chain U
298–327(30 aa)
Chain V
298–327(30 aa)
Chain W
298–327(30 aa)
Chain X
298–327(30 aa)
Chain Y
298–327(30 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 6.5;In water.
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.67 Å |
| 9PLL TRIM21-NUP98 Molecular Glue Complex (MAN-056) Deposited 2025-07-15 | Assembly 1 Protein heterocomplex Heteromer;Protein × 2 PDB declaration: dimeric(2) Consistent with protein count |
Chain C
712–863(152 aa)
|
Not recorded | A1BLD (3P)-3-(4-chloro-2-ethoxyphenyl)-6-fluoro-2-[(piperazin-1-yl)methyl]quinazolin-4(3H)-one × 1 GOL GLYCEROL × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;289 K;100 mM NaCl, 100 mM HEPES, pH 7.5, 12 % polyethylene glycol 20,000
|
Resolution 1.60 Å R-free 0.214 |
| 9PLM TRIM21-NUP98 Molecular Glue Complex (MAN-021) Deposited 2025-07-15 | Assembly 1 Protein heterocomplex Heteromer;Protein × 2 PDB declaration: dimeric(2) Consistent with protein count |
Chain C
712–863(152 aa)
|
Not recorded | A1CI1 (3P)-3-{4-chloro-2-[2-(dimethylamino)ethoxy]phenyl}-6-fluoro-2-[(piperazin-1-yl)methyl]quinazolin-4(3H)-one × 1 GOL GLYCEROL × 6 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;289 K;100 mM NaCl, 100 mM HEPES, pH 7.5, 12 % polyethylene glycol 20,000
|
Resolution 1.32 Å R-free 0.178 |