1cud

CUTINASE, N172K, R196D MUTANT, MONOCLINIC CRYSTAL FORM WITH THREE MOLECULES PER ASYMMETRIC UNIT

Method: X-RAY DIFFRACTION Dmax: 121.6 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

CUTINASE

Nectria haematococca mpVI

UniProt P00590

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain C; UniProt 17–230 Mutation:N172K, R196E No other associated polymer X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions Resolution 2.70 Å
2 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 17–230 Mutation:N172K, R196E No other associated polymer X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions Resolution 2.70 Å
3 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain B; UniProt 17–230 Mutation:N172K, R196E No other associated polymer X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions Resolution 2.70 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

43 other PDB entries and 47 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name CUTI1_FUSSO
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–214; UniProt 17–230 Author chain B; PDBConstruct 1–214; UniProt 17–230 Author chain C; PDBConstruct 1–214; UniProt 17–230

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 1cud

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 1cud
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2. Structure Basics 2. Structure Basics

Entry ID entry_id1cud
Deposition date deposition_date1995-11-16
Structure title titleCUTINASE, N172K, R196D MUTANT, MONOCLINIC CRYSTAL FORM WITH THREE MOLECULES PER ASYMMETRIC UNIT
Keywords keywordsHYDROLASE, SERINE ESTERASE, GLYCOPROTEIN, HYDROLASE (SERINE ESTERASE); HYDROLASE (SERINE ESTERASE)
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier35.87
Radius of gyration Rg (electron density) rg_electron35.74
Forward intensity I(0) i062028000.00
Molecular weight molecular_weight61353.0 kDa
Excluded volume excluded_volume76192 ų
Envelope volume envelope_volume99845 ų
Hydration-shell volume shell_volume25557 ų
Envelope diameter envelope_diameter122.1
Shell Rg shell_rg38.19
Envelope Rg envelope_rg35.02
Shape Rg shape_rg35.73
Total Rg total_rg35.96
Total atoms total_atoms5310
Residues n_residues591
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax121.6
Rg (real space) rg_real36.25
Rg uncertainty (real space) rg_real_error1.27
I(0) (real space) i0_real6.2030e+07
I(0) uncertainty (real space) i0_real_error1.0730e+06
Rg (reciprocal space) rg_reciprocal36.02
I(0) (reciprocal space) i0_reciprocal62010000.0000
Solution quality estimate total_estimate0.6501
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks3
Primary peak position r_peak_primary22.1
Skewness Skewness skewness0.387
Kurtosis Kurtosis kurtosis-0.788
Angular range angular_range— – 0.2200 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha23680000.0000
Real-space data points n_real_points45
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.394; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.264; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (2)

7. Fold Classification (SCOP + CATH) 6 domains

SCOP 2.08 (3 domains)

Domain ID domain_idd1cuda_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.69 — alpha/beta-Hydrolases
Superfamily Superfamily superfamilyc.69.1 — alpha/beta-Hydrolases
Family Family familyc.69.1.30 — Cutinase-like
Domain ID domain_idd1cudb_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.69 — alpha/beta-Hydrolases
Superfamily Superfamily superfamilyc.69.1 — alpha/beta-Hydrolases
Family Family familyc.69.1.30 — Cutinase-like
Domain ID domain_idd1cudc_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.69 — alpha/beta-Hydrolases
Superfamily Superfamily superfamilyc.69.1 — alpha/beta-Hydrolases
Family Family familyc.69.1.30 — Cutinase-like

CATH v4.4 (3 domains)

Domain ID domain_id1cudA00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily1820 — Alpha/Beta hydrolase fold, catalytic domain
Domain ID domain_id1cudB00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily1820 — Alpha/Beta hydrolase fold, catalytic domain
Domain ID domain_id1cudC00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily1820 — Alpha/Beta hydrolase fold, catalytic domain

8. Citations (5)

9. Files and Curves (10)