1go4

Crystal structure of Mad1-Mad2 reveals a conserved Mad2 binding motif in Mad1 and Cdc20.

Method: X-RAY DIFFRACTION Dmax: 180.2 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Mitotic spindle assembly checkpoint protein MAD2A

Homo sapiens

UniProt Q13257

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 8 PDB declaration: octameric(8) Consistent with protein copy count Chain A; UniProt 1–205 Chain B; UniProt 1–205 Chain C; UniProt 1–205 Chain D; UniProt 1–205 Mutation:R133A Mitotic spindle assembly checkpoint protein MAD1 × 4 (Q9Y6D9) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 5.2;PROTEIN CONCENTRATION 7.5 MG/ML HANGING DROP METHOD, WELL=100 MM AMMONIUM SULPHATE, 100 MM AMMONIUM CITRATE PH 5.2, 10 MM DTT Resolution 2.05 Å R-free 0.268

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

11 other PDB entries and 30 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name MD2L1_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–205; UniProt 1–205 Author chain B; PDBConstruct 1–205; UniProt 1–205 Author chain C; PDBConstruct 1–205; UniProt 1–205 Author chain D; PDBConstruct 1–205; UniProt 1–205

Mitotic spindle assembly checkpoint protein MAD1

Homo sapiens

UniProt Q9Y6D9

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 8 PDB declaration: octameric(8) Consistent with protein copy count Chain E; UniProt 393–492 Chain F; UniProt 393–492 Chain G; UniProt 393–492 Chain H; UniProt 393–492 Fragment:RESIDUES 485-584 Mitotic spindle assembly checkpoint protein MAD2A × 4 (Q13257) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 5.2;PROTEIN CONCENTRATION 7.5 MG/ML HANGING DROP METHOD, WELL=100 MM AMMONIUM SULPHATE, 100 MM AMMONIUM CITRATE PH 5.2, 10 MM DTT Resolution 2.05 Å R-free 0.268

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

4 other PDB entries and 5 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name MD1L1_HUMAN
Isoform Q9Y6D9-3
PDB entities 2
Chains and sequence ranges Author chain E; PDBConstruct 1–100; UniProt 393–492 Author chain F; PDBConstruct 1–100; UniProt 393–492 Author chain G; PDBConstruct 1–100; UniProt 393–492 Author chain H; PDBConstruct 1–100; UniProt 393–492

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 1go4

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 1go4
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2. Structure Basics 2. Structure Basics

Entry ID entry_id1go4
Deposition date deposition_date2001-10-17
Structure title titleCrystal structure of Mad1-Mad2 reveals a conserved Mad2 binding motif in Mad1 and Cdc20.
Keywords keywordsMITOTIC SPINDLE CHECKPOINT, CELL CYCLE, MITOSIS, NUCLEAR PRO; CELL CYCLE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier46.38
Radius of gyration Rg (electron density) rg_electron46.89
Forward intensity I(0) i0259647000.00
Molecular weight molecular_weight132240.0 kDa
Excluded volume excluded_volume165820 ų
Envelope volume envelope_volume257210 ų
Hydration-shell volume shell_volume48363 ų
Envelope diameter envelope_diameter190.6
Shell Rg shell_rg47.61
Envelope Rg envelope_rg46.36
Shape Rg shape_rg46.85
Total Rg total_rg47.06
Total atoms total_atoms9300
Residues n_residues1146
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax180.2
Rg (real space) rg_real46.88
Rg uncertainty (real space) rg_real_error2.54
I(0) (real space) i0_real2.5960e+08
I(0) uncertainty (real space) i0_real_error5.8610e+06
Rg (reciprocal space) rg_reciprocal46.38
I(0) (reciprocal space) i0_reciprocal259500000.0000
Solution quality estimate total_estimate0.7785
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary37.1
Skewness Skewness skewness0.497
Kurtosis Kurtosis kurtosis-0.324
Angular range angular_range— – 0.1700 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha31290000.0000
Real-space data points n_real_points35
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.508; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.613; Smooth: 0.979

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

7. Fold Classification (SCOP + CATH) 16 domains

SCOP 2.08 (8 domains)

Domain ID domain_idd1go4a_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.135 — The spindle assembly checkpoint protein mad2
Superfamily Superfamily superfamilyd.135.1 — The spindle assembly checkpoint protein mad2
Family Family familyd.135.1.1 — The spindle assembly checkpoint protein mad2
Domain ID domain_idd1go4b_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.135 — The spindle assembly checkpoint protein mad2
Superfamily Superfamily superfamilyd.135.1 — The spindle assembly checkpoint protein mad2
Family Family familyd.135.1.1 — The spindle assembly checkpoint protein mad2
Domain ID domain_idd1go4c_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.135 — The spindle assembly checkpoint protein mad2
Superfamily Superfamily superfamilyd.135.1 — The spindle assembly checkpoint protein mad2
Family Family familyd.135.1.1 — The spindle assembly checkpoint protein mad2
Domain ID domain_idd1go4d_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.135 — The spindle assembly checkpoint protein mad2
Superfamily Superfamily superfamilyd.135.1 — The spindle assembly checkpoint protein mad2
Family Family familyd.135.1.1 — The spindle assembly checkpoint protein mad2
Domain ID domain_idd1go4e_
Class classh — Coiled coil proteins
Fold Fold foldh.1 — Parallel coiled-coil
Superfamily Superfamily superfamilyh.1.22 — Mitotic arrest deficient-like 1, Mad1
Family Family familyh.1.22.1 — Mitotic arrest deficient-like 1, Mad1
Domain ID domain_idd1go4f_
Class classh — Coiled coil proteins
Fold Fold foldh.1 — Parallel coiled-coil
Superfamily Superfamily superfamilyh.1.22 — Mitotic arrest deficient-like 1, Mad1
Family Family familyh.1.22.1 — Mitotic arrest deficient-like 1, Mad1
Domain ID domain_idd1go4g_
Class classh — Coiled coil proteins
Fold Fold foldh.1 — Parallel coiled-coil
Superfamily Superfamily superfamilyh.1.22 — Mitotic arrest deficient-like 1, Mad1
Family Family familyh.1.22.1 — Mitotic arrest deficient-like 1, Mad1
Domain ID domain_idd1go4h_
Class classh — Coiled coil proteins
Fold Fold foldh.1 — Parallel coiled-coil
Superfamily Superfamily superfamilyh.1.22 — Mitotic arrest deficient-like 1, Mad1
Family Family familyh.1.22.1 — Mitotic arrest deficient-like 1, Mad1

CATH v4.4 (8 domains)

Domain ID domain_id1go4A00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology900 — Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A
Homologous superfamily homologous superfamily10 — HORMA domain
Domain ID domain_id1go4B00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology900 — Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A
Homologous superfamily homologous superfamily10 — HORMA domain
Domain ID domain_id1go4C00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology900 — Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A
Homologous superfamily homologous superfamily10 — HORMA domain
Domain ID domain_id1go4D00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology900 — Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A
Homologous superfamily homologous superfamily10 — HORMA domain
Domain ID domain_id1go4E00
Class class6 — Special
Architecture architecture10 — Helix non-globular
Topology topology250 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily90
Domain ID domain_id1go4F00
Class class6 — Special
Architecture architecture10 — Helix non-globular
Topology topology250 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily90
Domain ID domain_id1go4G00
Class class6 — Special
Architecture architecture10 — Helix non-globular
Topology topology250 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily90
Domain ID domain_id1go4H00
Class class6 — Special
Architecture architecture10 — Helix non-globular
Topology topology250 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily90

8. Citations (1)

9. Files and Curves (10)