1oqa

Solution structure of the BRCT-c domain from human BRCA1

Method: SOLUTION NMR Dmax: 39.5 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

Breast cancer type 1 susceptibility protein

Homo sapiens

UniProt P38398

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 1755–1863 Fragment:BRCT-c No other associated polymer SOLUTION NMR NMR measurement conditions:pH 6.8;295.9 K;Pressure 1 NMR sample composition:0.7mM BRCT-c; U-15N,13C, 20mM Potassium phosphate buffer pH 6.8, 5 mM KCl, 10 mM d10-DTT, 99.98% D2O | 99.98% D2O NMR sample composition:1.3 mM BRCT-c; U-15N, 20 mM Potassium phosphate buffer pH 6.8, 5 mM KCl, 10 mM d10-DTT, 93% H2O, 7% D2O | 93% H2O/7% D2O NMR sample composition:1.3 mM BRCT-c; U-15N, 20 mM Potassium phosphate buffer pH 6.8, 5 mM KCl, 10 mM d10-DTT, 99.98% D2O | 99.98% D2O Resolution not provided

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

31 other PDB entries and 70 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name BRCA1_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 2–110; UniProt 1755–1863

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 1oqa

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 1oqa
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2. Structure Basics 2. Structure Basics

Entry ID entry_id1oqa
Deposition date deposition_date2003-03-07
Structure title titleSolution structure of the BRCT-c domain from human BRCA1
Keywords keywordsBRCT, breast cancer, GENE REGULATION; GENE REGULATION
Experimental Method methodSOLUTION NMR

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier15.17
Radius of gyration Rg (electron density) rg_electron14.45
Forward intensity I(0) i0486382000.00
Molecular weight molecular_weight185250.0 kDa
Excluded volume excluded_volume231020 ų
Envelope volume envelope_volume39937 ų
Hydration-shell volume shell_volume18129 ų
Envelope diameter envelope_diameter68.8
Shell Rg shell_rg24.88
Envelope Rg envelope_rg19.37
Shape Rg shape_rg14.48
Total Rg total_rg14.66
Total atoms total_atoms25545
Residues n_residues1650
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax39.5
Rg (real space) rg_real14.38
Rg uncertainty (real space) rg_real_error0.05
I(0) (real space) i0_real4.6380e+08
I(0) uncertainty (real space) i0_real_error3.7420e+06
Rg (reciprocal space) rg_reciprocal15.20
I(0) (reciprocal space) i0_reciprocal486400000.0000
Solution quality estimate total_estimate0.6850
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary18.0
Skewness Skewness skewness0.192
Kurtosis Kurtosis kurtosis-0.365
Angular range angular_range— – 0.5000 −1
Current regularization parameter α current_alpha3.5000
Highest regularization parameter α highest_alpha295500.0000
Real-space data points n_real_points80
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.003; Oscil: 0.988; Stabil: 0.983; Sysdev: 0.000; Positv: 1.000; Valcen: 0.992; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (1)

7. Fold Classification (SCOP + CATH) 3 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd1oqaa1
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.15 — BRCT domain
Superfamily Superfamily superfamilyc.15.1 — BRCT domain
Family Family familyc.15.1.3 — BRCT domain
Domain ID domain_idd1oqaa2
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags

CATH v4.4 (1 domains)

Domain ID domain_id1oqaA00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily10190 — BRCT domain

8. Citations (1)

9. Files and Curves (10)