3lut

A Structural Model for the Full-length Shaker Potassium Channel Kv1.2

Method: X-RAY DIFFRACTION Dmax: 166.6 Å Quality: SUSPICIOUS

1. Protein Identity and Related Structures Protein Identity & Related Structures

Voltage-gated potassium channel subunit beta-2

Rattus norvegicus

UniProt P62483

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 8 PDB declaration: octameric(8) Consistent with protein copy count Chain A; UniProt 1–367 Not recorded Potassium voltage-gated channel subfamily A member 2 × 4 (P63142) NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE × 4 K POTASSIUM ION × 24 X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions Resolution 2.90 Å R-free 0.221

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

17 other PDB entries and 29 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name KCAB2_RAT
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–367; UniProt 1–367

Potassium voltage-gated channel subfamily A member 2

Rattus norvegicus

UniProt P63142

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 8 PDB declaration: octameric(8) Consistent with protein copy count Chain B; UniProt 1–499 Mutation:N207Q Voltage-gated potassium channel subunit beta-2 × 4 (P62483) NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE × 4 K POTASSIUM ION × 24 X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions Resolution 2.90 Å R-free 0.221

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

16 other PDB entries and 23 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name KCNA2_RAT
Isoform
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–499; UniProt 1–499

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 3lut

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 3lut
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2. Structure Basics 2. Structure Basics

Entry ID entry_id3lut
Deposition date deposition_date2010-02-18
Structure title titleA Structural Model for the Full-length Shaker Potassium Channel Kv1.2
Keywords keywords;Voltage gating, potassium channel, Kv1.2, gating charges, normal-mode analysis, Ion transport, Ionic channel, NADP, Phosphoprotein, Potassium, Potassium transport, Transport, Voltage-gated channel, Glycoprotein, Lipoprotein, Membrane, Palmitate, Transmembrane, MEMBRANE PROTEIN ;; MEMBRANE PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier47.45
Radius of gyration Rg (electron density) rg_electron48.69
Forward intensity I(0) i093312000.00
Molecular weight molecular_weight81952.0 kDa
Excluded volume excluded_volume103760 ų
Envelope volume envelope_volume163800 ų
Hydration-shell volume shell_volume31485 ų
Envelope diameter envelope_diameter176.9
Shell Rg shell_rg44.67
Envelope Rg envelope_rg48.81
Shape Rg shape_rg48.67
Total Rg total_rg48.52
Total atoms total_atoms5762
Residues n_residues716
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax166.6
Rg (real space) rg_real49.87
Rg uncertainty (real space) rg_real_error0.83
I(0) (real space) i0_real9.3640e+07
I(0) uncertainty (real space) i0_real_error1.5340e+06
Rg (reciprocal space) rg_reciprocal47.46
I(0) (reciprocal space) i0_reciprocal93180000.0000
Solution quality estimate total_estimate0.4959
Solution quality rating solution_quality SUSPICIOUS a SUSPICIOUS solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary30.3
Skewness Skewness skewness0.583
Kurtosis Kurtosis kurtosis-0.559
Angular range angular_range— – 0.1650 −1
Current regularization parameter α current_alpha1.3660
Highest regularization parameter α highest_alpha4000000.0000
Real-space data points n_real_points34
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.411; Stabil: 0.948; Sysdev: 0.000; Positv: 1.000; Valcen: 0.200; Smooth: 0.172

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (5)

7. Fold Classification (SCOP + CATH) 5 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd3luta_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.1 — TIM beta/alpha-barrel
Superfamily Superfamily superfamilyc.1.7 — NAD(P)-linked oxidoreductase
Family Family familyc.1.7.1 — Aldo-keto reductases (NADP)

CATH v4.4 (4 domains)

Domain ID domain_id3lutA00
Class class3 — Alpha Beta
Architecture architecture20 — Alpha-Beta Barrel
Topology topology20 — TIM Barrel
Homologous superfamily homologous superfamily100 — NADP-dependent oxidoreductase domain
Domain ID domain_id3lutB01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology710 — Potassium Channel Kv1.1; Chain A
Homologous superfamily homologous superfamily10 — Potassium Channel Kv1.1; Chain A
Domain ID domain_id3lutB02
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology120 — Four Helix Bundle (Hemerythrin (Met), subunit A)
Homologous superfamily homologous superfamily350 — Voltage-gated potassium channels. Chain C
Domain ID domain_id3lutB03
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70

8. Citations (3)

9. Files and Curves (10)