4a63

Crystal structure of the p73-ASPP2 complex at 2.6A resolution

Method: X-RAY DIFFRACTION Dmax: 159.5 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

TUMOUR PROTEIN 73

HOMO SAPIENS

UniProt O15350

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 112–311 Fragment:DNA-BINDING DOMAIN, RESIDUES 1-208 APOPTOSIS STIMULATING OF P53 PROTEIN 2 × 1 (Q13625) X-RAY DIFFRACTION X-ray crystallization conditions:1.00M NA/KPO4, 0.1M ACETATE PH 4.5 Resolution 2.27 Å R-free 0.244
2 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain C; UniProt 112–311 Fragment:DNA-BINDING DOMAIN, RESIDUES 1-208 APOPTOSIS STIMULATING OF P53 PROTEIN 2 × 1 (Q13625) ZN ZINC ION × 1 ACT ACETATE ION × 3 X-RAY DIFFRACTION X-ray crystallization conditions:1.00M NA/KPO4, 0.1M ACETATE PH 4.5 Resolution 2.27 Å R-free 0.244
3 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain E; UniProt 112–311 Fragment:DNA-BINDING DOMAIN, RESIDUES 1-208 APOPTOSIS STIMULATING OF P53 PROTEIN 2 × 1 (Q13625) ZN ZINC ION × 1 X-RAY DIFFRACTION X-ray crystallization conditions:1.00M NA/KPO4, 0.1M ACETATE PH 4.5 Resolution 2.27 Å R-free 0.244
4 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain G; UniProt 112–311 Fragment:DNA-BINDING DOMAIN, RESIDUES 1-208 APOPTOSIS STIMULATING OF P53 PROTEIN 2 × 1 (Q13625) ZN ZINC ION × 1 ACT ACETATE ION × 1 X-RAY DIFFRACTION X-ray crystallization conditions:1.00M NA/KPO4, 0.1M ACETATE PH 4.5 Resolution 2.27 Å R-free 0.244
5 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain I; UniProt 112–311 Fragment:DNA-BINDING DOMAIN, RESIDUES 1-208 APOPTOSIS STIMULATING OF P53 PROTEIN 2 × 1 (Q13625) ZN ZINC ION × 1 ACT ACETATE ION × 2 X-RAY DIFFRACTION X-ray crystallization conditions:1.00M NA/KPO4, 0.1M ACETATE PH 4.5 Resolution 2.27 Å R-free 0.244
6 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain K; UniProt 112–311 Fragment:DNA-BINDING DOMAIN, RESIDUES 1-208 ZN ZINC ION × 1 ACT ACETATE ION × 2 X-RAY DIFFRACTION X-ray crystallization conditions:1.00M NA/KPO4, 0.1M ACETATE PH 4.5 Resolution 2.27 Å R-free 0.244

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

27 other PDB entries and 42 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name P73_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 2–201; UniProt 112–311 Author chain C; PDBConstruct 2–201; UniProt 112–311 Author chain E; PDBConstruct 2–201; UniProt 112–311 Author chain G; PDBConstruct 2–201; UniProt 112–311 Author chain I; PDBConstruct 2–201; UniProt 112–311 Author chain K; PDBConstruct 2–201; UniProt 112–311

APOPTOSIS STIMULATING OF P53 PROTEIN 2

HOMO SAPIENS

UniProt Q13625

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain B; UniProt 892–1128 Fragment:ANKYRIN AND SH3 DOMAINS, RESIDUES 892-1128 TUMOUR PROTEIN 73 × 1 (O15350) X-RAY DIFFRACTION X-ray crystallization conditions:1.00M NA/KPO4, 0.1M ACETATE PH 4.5 Resolution 2.27 Å R-free 0.244
2 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain D; UniProt 892–1128 Fragment:ANKYRIN AND SH3 DOMAINS, RESIDUES 892-1128 TUMOUR PROTEIN 73 × 1 (O15350) ZN ZINC ION × 1 ACT ACETATE ION × 3 X-RAY DIFFRACTION X-ray crystallization conditions:1.00M NA/KPO4, 0.1M ACETATE PH 4.5 Resolution 2.27 Å R-free 0.244
3 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain F; UniProt 892–1128 Fragment:ANKYRIN AND SH3 DOMAINS, RESIDUES 892-1128 TUMOUR PROTEIN 73 × 1 (O15350) ZN ZINC ION × 1 X-RAY DIFFRACTION X-ray crystallization conditions:1.00M NA/KPO4, 0.1M ACETATE PH 4.5 Resolution 2.27 Å R-free 0.244
4 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain H; UniProt 892–1128 Fragment:ANKYRIN AND SH3 DOMAINS, RESIDUES 892-1128 TUMOUR PROTEIN 73 × 1 (O15350) ZN ZINC ION × 1 ACT ACETATE ION × 1 X-RAY DIFFRACTION X-ray crystallization conditions:1.00M NA/KPO4, 0.1M ACETATE PH 4.5 Resolution 2.27 Å R-free 0.244
5 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain J; UniProt 892–1128 Fragment:ANKYRIN AND SH3 DOMAINS, RESIDUES 892-1128 TUMOUR PROTEIN 73 × 1 (O15350) ZN ZINC ION × 1 ACT ACETATE ION × 2 X-RAY DIFFRACTION X-ray crystallization conditions:1.00M NA/KPO4, 0.1M ACETATE PH 4.5 Resolution 2.27 Å R-free 0.244
7 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain L; UniProt 892–1128 Fragment:ANKYRIN AND SH3 DOMAINS, RESIDUES 892-1128 ACT ACETATE ION × 1 X-RAY DIFFRACTION X-ray crystallization conditions:1.00M NA/KPO4, 0.1M ACETATE PH 4.5 Resolution 2.27 Å R-free 0.244

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

5 other PDB entries and 9 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ASPP2_HUMAN
Isoform
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 3–239; UniProt 892–1128 Author chain D; PDBConstruct 3–239; UniProt 892–1128 Author chain F; PDBConstruct 3–239; UniProt 892–1128 Author chain H; PDBConstruct 3–239; UniProt 892–1128 Author chain J; PDBConstruct 3–239; UniProt 892–1128 Author chain L; PDBConstruct 3–239; UniProt 892–1128

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 4a63

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 4a63
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2. Structure Basics 2. Structure Basics

Entry ID entry_id4a63
Deposition date deposition_date2011-10-31
Structure title titleCrystal structure of the p73-ASPP2 complex at 2.6A resolution
Keywords keywordsCELL CYCLE, TP53BP2, TUMOUR SUPPRESSOR, ANKYRINS, APOPTOSIS REGULATORY PROTEINS; CELL CYCLE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier48.28
Radius of gyration Rg (electron density) rg_electron47.99
Forward intensity I(0) i01052100000.00
Molecular weight molecular_weight262340.0 kDa
Excluded volume excluded_volume324860 ų
Envelope volume envelope_volume492950 ų
Hydration-shell volume shell_volume84626 ų
Envelope diameter envelope_diameter158.4
Shell Rg shell_rg53.83
Envelope Rg envelope_rg46.34
Shape Rg shape_rg48.02
Total Rg total_rg48.13
Total atoms total_atoms18442
Residues n_residues2419
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax159.5
Rg (real space) rg_real48.04
Rg uncertainty (real space) rg_real_error1.20
I(0) (real space) i0_real1.0520e+09
I(0) uncertainty (real space) i0_real_error1.9700e+07
Rg (reciprocal space) rg_reciprocal48.28
I(0) (reciprocal space) i0_reciprocal1052000000.0000
Solution quality estimate total_estimate0.8794
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary62.8
Skewness Skewness skewness0.168
Kurtosis Kurtosis kurtosis-0.381
Angular range angular_range— – 0.1650 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha62660000.0000
Real-space data points n_real_points34
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.851; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.982; Smooth: 0.893

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (5)

7. Fold Classification (SCOP + CATH) 42 domains

SCOP 2.08 (24 domains)

Domain ID domain_idd4a63a1
Class classb — All beta proteins
Fold Fold foldb.2 — Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily Superfamily superfamilyb.2.5 — p53-like transcription factors
Family Family familyb.2.5.2 — p53 DNA-binding domain-like
Domain ID domain_idd4a63a2
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd4a63b1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.211 — beta-hairpin-alpha-hairpin repeat
Superfamily Superfamily superfamilyd.211.1 — Ankyrin repeat
Family Family familyd.211.1.1 — Ankyrin repeat
Domain ID domain_idd4a63b2
Class classb — All beta proteins
Fold Fold foldb.34 — SH3-like barrel
Superfamily Superfamily superfamilyb.34.2 — SH3-domain
Family Family familyb.34.2.0 — automated matches
Domain ID domain_idd4a63c1
Class classb — All beta proteins
Fold Fold foldb.2 — Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily Superfamily superfamilyb.2.5 — p53-like transcription factors
Family Family familyb.2.5.2 — p53 DNA-binding domain-like
Domain ID domain_idd4a63c2
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd4a63d1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.211 — beta-hairpin-alpha-hairpin repeat
Superfamily Superfamily superfamilyd.211.1 — Ankyrin repeat
Family Family familyd.211.1.1 — Ankyrin repeat
Domain ID domain_idd4a63d2
Class classb — All beta proteins
Fold Fold foldb.34 — SH3-like barrel
Superfamily Superfamily superfamilyb.34.2 — SH3-domain
Family Family familyb.34.2.0 — automated matches
Domain ID domain_idd4a63e1
Class classb — All beta proteins
Fold Fold foldb.2 — Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily Superfamily superfamilyb.2.5 — p53-like transcription factors
Family Family familyb.2.5.2 — p53 DNA-binding domain-like
Domain ID domain_idd4a63e2
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd4a63f1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.211 — beta-hairpin-alpha-hairpin repeat
Superfamily Superfamily superfamilyd.211.1 — Ankyrin repeat
Family Family familyd.211.1.1 — Ankyrin repeat
Domain ID domain_idd4a63f2
Class classb — All beta proteins
Fold Fold foldb.34 — SH3-like barrel
Superfamily Superfamily superfamilyb.34.2 — SH3-domain
Family Family familyb.34.2.0 — automated matches
Domain ID domain_idd4a63g1
Class classb — All beta proteins
Fold Fold foldb.2 — Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily Superfamily superfamilyb.2.5 — p53-like transcription factors
Family Family familyb.2.5.2 — p53 DNA-binding domain-like
Domain ID domain_idd4a63g2
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd4a63h1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.211 — beta-hairpin-alpha-hairpin repeat
Superfamily Superfamily superfamilyd.211.1 — Ankyrin repeat
Family Family familyd.211.1.1 — Ankyrin repeat
Domain ID domain_idd4a63h2
Class classb — All beta proteins
Fold Fold foldb.34 — SH3-like barrel
Superfamily Superfamily superfamilyb.34.2 — SH3-domain
Family Family familyb.34.2.0 — automated matches
Domain ID domain_idd4a63i1
Class classb — All beta proteins
Fold Fold foldb.2 — Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily Superfamily superfamilyb.2.5 — p53-like transcription factors
Family Family familyb.2.5.2 — p53 DNA-binding domain-like
Domain ID domain_idd4a63i2
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd4a63j1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.211 — beta-hairpin-alpha-hairpin repeat
Superfamily Superfamily superfamilyd.211.1 — Ankyrin repeat
Family Family familyd.211.1.1 — Ankyrin repeat
Domain ID domain_idd4a63j2
Class classb — All beta proteins
Fold Fold foldb.34 — SH3-like barrel
Superfamily Superfamily superfamilyb.34.2 — SH3-domain
Family Family familyb.34.2.0 — automated matches
Domain ID domain_idd4a63k1
Class classb — All beta proteins
Fold Fold foldb.2 — Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily Superfamily superfamilyb.2.5 — p53-like transcription factors
Family Family familyb.2.5.2 — p53 DNA-binding domain-like
Domain ID domain_idd4a63k2
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd4a63l1
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.211 — beta-hairpin-alpha-hairpin repeat
Superfamily Superfamily superfamilyd.211.1 — Ankyrin repeat
Family Family familyd.211.1.1 — Ankyrin repeat
Domain ID domain_idd4a63l2
Class classb — All beta proteins
Fold Fold foldb.34 — SH3-like barrel
Superfamily Superfamily superfamilyb.34.2 — SH3-domain
Family Family familyb.34.2.0 — automated matches

CATH v4.4 (18 domains)

Domain ID domain_id4a63A00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily720
Domain ID domain_id4a63B01
Class class1 — Mainly Alpha
Architecture architecture25 — Alpha Horseshoe
Topology topology40 — Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
Homologous superfamily homologous superfamily20 — Ankyrin repeat-containing domain
Domain ID domain_id4a63B02
Class class2 — Mainly Beta
Architecture architecture30 — Roll
Topology topology30 — SH3 type barrels.
Homologous superfamily homologous superfamily40 — SH3 Domains
Domain ID domain_id4a63C00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily720
Domain ID domain_id4a63D01
Class class1 — Mainly Alpha
Architecture architecture25 — Alpha Horseshoe
Topology topology40 — Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
Homologous superfamily homologous superfamily20 — Ankyrin repeat-containing domain
Domain ID domain_id4a63D02
Class class2 — Mainly Beta
Architecture architecture30 — Roll
Topology topology30 — SH3 type barrels.
Homologous superfamily homologous superfamily40 — SH3 Domains
Domain ID domain_id4a63E00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily720
Domain ID domain_id4a63F01
Class class1 — Mainly Alpha
Architecture architecture25 — Alpha Horseshoe
Topology topology40 — Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
Homologous superfamily homologous superfamily20 — Ankyrin repeat-containing domain
Domain ID domain_id4a63F02
Class class2 — Mainly Beta
Architecture architecture30 — Roll
Topology topology30 — SH3 type barrels.
Homologous superfamily homologous superfamily40 — SH3 Domains
Domain ID domain_id4a63G00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily720
Domain ID domain_id4a63H01
Class class1 — Mainly Alpha
Architecture architecture25 — Alpha Horseshoe
Topology topology40 — Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
Homologous superfamily homologous superfamily20 — Ankyrin repeat-containing domain
Domain ID domain_id4a63H02
Class class2 — Mainly Beta
Architecture architecture30 — Roll
Topology topology30 — SH3 type barrels.
Homologous superfamily homologous superfamily40 — SH3 Domains
Domain ID domain_id4a63I00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily720
Domain ID domain_id4a63J01
Class class1 — Mainly Alpha
Architecture architecture25 — Alpha Horseshoe
Topology topology40 — Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
Homologous superfamily homologous superfamily20 — Ankyrin repeat-containing domain
Domain ID domain_id4a63J02
Class class2 — Mainly Beta
Architecture architecture30 — Roll
Topology topology30 — SH3 type barrels.
Homologous superfamily homologous superfamily40 — SH3 Domains
Domain ID domain_id4a63K00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily720
Domain ID domain_id4a63L01
Class class1 — Mainly Alpha
Architecture architecture25 — Alpha Horseshoe
Topology topology40 — Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
Homologous superfamily homologous superfamily20 — Ankyrin repeat-containing domain
Domain ID domain_id4a63L02
Class class2 — Mainly Beta
Architecture architecture30 — Roll
Topology topology30 — SH3 type barrels.
Homologous superfamily homologous superfamily40 — SH3 Domains

8. Citations (1)

9. Files and Curves (10)