4asu

F1-ATPase in which all three catalytic sites contain bound nucleotide, with magnesium ion released in the Empty site

Method: X-RAY DIFFRACTION
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL

物种未注明

UniProt P19483

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 9 ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL × 3 (P00829) ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL × 1 (P05631) ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL × 1 (P05630) ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL × 1 (P05632) ADENOSINE-5'-DIPHOSPHATE × 6 MAGNESIUM ION × 5 water × 9 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 ATPA_BOVIN
Isoform —
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–510; UniProt 44–553 作者链 B; PDB构建体 1–510; UniProt 44–553 作者链 C; PDB构建体 1–510; UniProt 44–553

ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL

物种未注明

UniProt P00829

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 9 ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL × 3 (P19483) ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL × 1 (P05631) ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL × 1 (P05630) ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL × 1 (P05632) ADENOSINE-5'-DIPHOSPHATE × 6 MAGNESIUM ION × 5 water × 9 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 ATPB_BOVIN
Isoform —
PDB实体 2
链与序列区间 作者链 D; PDB构建体 1–480; UniProt 49–528 作者链 E; PDB构建体 1–480; UniProt 49–528 作者链 F; PDB构建体 1–480; UniProt 49–528

ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL

物种未注明

UniProt P05631

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 9 ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL × 3 (P19483) ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL × 3 (P00829) ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL × 1 (P05630) ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL × 1 (P05632) ADENOSINE-5'-DIPHOSPHATE × 6 MAGNESIUM ION × 5 water × 9 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 ATPG_BOVIN
Isoform —
PDB实体 3
链与序列区间 作者链 G; PDB构建体 1–273; UniProt 323–595

ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL

物种未注明

UniProt P05630

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 9 ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL × 3 (P19483) ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL × 3 (P00829) ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL × 1 (P05631) ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL × 1 (P05632) ADENOSINE-5'-DIPHOSPHATE × 6 MAGNESIUM ION × 5 water × 9 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 ATPD_BOVIN
Isoform —
PDB实体 4
链与序列区间 作者链 H; PDB构建体 1–146; UniProt 23–168

ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL

物种未注明

UniProt P05632

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 9 ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL × 3 (P19483) ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL × 3 (P00829) ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL × 1 (P05631) ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL × 1 (P05630) ADENOSINE-5'-DIPHOSPHATE × 6 MAGNESIUM ION × 5 water × 9 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 ATP5E_BOVIN
Isoform —
PDB实体 5
链与序列区间 作者链 I; PDB构建体 1–50; UniProt 2–51

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id4asu
沉积日期 deposition_date2012-05-03
结构标题 titleF1-ATPase in which all three catalytic sites contain bound nucleotide, with magnesium ion released in the Empty site
关键词 keywordsHYDROLASE; HYDROLASE
实验方法 methodX-RAY DIFFRACTION
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

4asu__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

4asu__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

4asu__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)43.67 Å
Rg(电子密度)42.96 Å
总 Rg43.31 Å
原子数23975
残基数3130
排除体积429020 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 4asu__assembly_1__model_1 nonameric (9) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (8)

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6. 折叠分类 (SCOP + CATH) 41 domains

SCOP 2.08 (20 domains)

结构域编号 domain_idd4asua1
类 Class classb — All beta proteins
折叠类型 Fold foldb.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamilyb.49.1 — N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family familyb.49.1.1 — N-terminal domain of alpha and beta subunits of F1 ATP synthase
结构域编号 domain_idd4asua2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
超家族 Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
家族 Family familyc.37.1.11 — RecA protein-like (ATPase-domain)
结构域编号 domain_idd4asua3
类 Class classa — All alpha proteins
折叠类型 Fold folda.69 — Left-handed superhelix
超家族 Superfamily superfamilya.69.1 — C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family familya.69.1.1 — C-terminal domain of alpha and beta subunits of F1 ATP synthase
结构域编号 domain_idd4asub1
类 Class classb — All beta proteins
折叠类型 Fold foldb.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamilyb.49.1 — N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family familyb.49.1.1 — N-terminal domain of alpha and beta subunits of F1 ATP synthase
结构域编号 domain_idd4asub2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
超家族 Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
家族 Family familyc.37.1.11 — RecA protein-like (ATPase-domain)
结构域编号 domain_idd4asub3
类 Class classa — All alpha proteins
折叠类型 Fold folda.69 — Left-handed superhelix
超家族 Superfamily superfamilya.69.1 — C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family familya.69.1.1 — C-terminal domain of alpha and beta subunits of F1 ATP synthase
结构域编号 domain_idd4asuc1
类 Class classb — All beta proteins
折叠类型 Fold foldb.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamilyb.49.1 — N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family familyb.49.1.1 — N-terminal domain of alpha and beta subunits of F1 ATP synthase
结构域编号 domain_idd4asuc2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
超家族 Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
家族 Family familyc.37.1.11 — RecA protein-like (ATPase-domain)
结构域编号 domain_idd4asuc3
类 Class classa — All alpha proteins
折叠类型 Fold folda.69 — Left-handed superhelix
超家族 Superfamily superfamilya.69.1 — C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family familya.69.1.1 — C-terminal domain of alpha and beta subunits of F1 ATP synthase
结构域编号 domain_idd4asud1
类 Class classb — All beta proteins
折叠类型 Fold foldb.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamilyb.49.1 — N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family familyb.49.1.0 — automated matches
结构域编号 domain_idd4asud2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
超家族 Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
家族 Family familyc.37.1.11 — RecA protein-like (ATPase-domain)
结构域编号 domain_idd4asud3
类 Class classa — All alpha proteins
折叠类型 Fold folda.69 — Left-handed superhelix
超家族 Superfamily superfamilya.69.1 — C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family familya.69.1.0 — automated matches
结构域编号 domain_idd4asue1
类 Class classb — All beta proteins
折叠类型 Fold foldb.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamilyb.49.1 — N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family familyb.49.1.0 — automated matches
结构域编号 domain_idd4asue2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
超家族 Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
家族 Family familyc.37.1.11 — RecA protein-like (ATPase-domain)
结构域编号 domain_idd4asue3
类 Class classa — All alpha proteins
折叠类型 Fold folda.69 — Left-handed superhelix
超家族 Superfamily superfamilya.69.1 — C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family familya.69.1.0 — automated matches
结构域编号 domain_idd4asuf1
类 Class classb — All beta proteins
折叠类型 Fold foldb.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamilyb.49.1 — N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family familyb.49.1.0 — automated matches
结构域编号 domain_idd4asuf2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
超家族 Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
家族 Family familyc.37.1.11 — RecA protein-like (ATPase-domain)
结构域编号 domain_idd4asuf3
类 Class classa — All alpha proteins
折叠类型 Fold folda.69 — Left-handed superhelix
超家族 Superfamily superfamilya.69.1 — C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family familya.69.1.0 — automated matches
结构域编号 domain_idd4asug_
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.49 — Pyruvate kinase C-terminal domain-like
超家族 Superfamily superfamilyc.49.2 — ATP synthase (F1-ATPase), gamma subunit
家族 Family familyc.49.2.1 — ATP synthase (F1-ATPase), gamma subunit
结构域编号 domain_idd4asui_
类 Class classa — All alpha proteins
折叠类型 Fold folda.137 — Non-globular all-alpha subunits of globular proteins
超家族 Superfamily superfamilya.137.8 — Epsilon subunit of mitochondrial F1F0-ATP synthase
家族 Family familya.137.8.1 — Epsilon subunit of mitochondrial F1F0-ATP synthase

CATH v4.4 (21 domains)

结构域编号 domain_id4asuA01
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
同源超家族 H-superfamily homologous superfamily20 —
结构域编号 domain_id4asuA02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
结构域编号 domain_id4asuA03
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology150 — Lysin
同源超家族 H-superfamily homologous superfamily20 — ATP synthase alpha/beta chain, C-terminal domain
结构域编号 domain_id4asuB01
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
同源超家族 H-superfamily homologous superfamily20 —
结构域编号 domain_id4asuB02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
结构域编号 domain_id4asuB03
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology150 — Lysin
同源超家族 H-superfamily homologous superfamily20 — ATP synthase alpha/beta chain, C-terminal domain
结构域编号 domain_id4asuC01
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
同源超家族 H-superfamily homologous superfamily20 —
结构域编号 domain_id4asuC02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
结构域编号 domain_id4asuC03
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology150 — Lysin
同源超家族 H-superfamily homologous superfamily20 — ATP synthase alpha/beta chain, C-terminal domain
结构域编号 domain_id4asuD01
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology10 — Thrombin, subunit H
同源超家族 H-superfamily homologous superfamily170 —
结构域编号 domain_id4asuD02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
结构域编号 domain_id4asuD03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology1140 — Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3
同源超家族 H-superfamily homologous superfamily10 — Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3
结构域编号 domain_id4asuE01
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology10 — Thrombin, subunit H
同源超家族 H-superfamily homologous superfamily170 —
结构域编号 domain_id4asuE02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
结构域编号 domain_id4asuE03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology1140 — Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3
同源超家族 H-superfamily homologous superfamily10 — Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3
结构域编号 domain_id4asuF01
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology10 — Thrombin, subunit H
同源超家族 H-superfamily homologous superfamily170 —
结构域编号 domain_id4asuF02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
结构域编号 domain_id4asuF03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology1140 — Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3
同源超家族 H-superfamily homologous superfamily10 — Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3
结构域编号 domain_id4asuG01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology287 — Helix Hairpins
同源超家族 H-superfamily homologous superfamily80 — ATP synthase, gamma subunit, helix hairpin domain
结构域编号 domain_id4asuG02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology1380 — Pyruvate Kinase; Chain: A, domain 1
同源超家族 H-superfamily homologous superfamily10 — ATP synthase, F1 complex, gamma subunit
结构域编号 domain_id4asuH00
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology15 — ATP Synthase; domain 1
同源超家族 H-superfamily homologous superfamily10 — F0F1 ATP synthase delta/epsilon subunit, N-terminal
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7. 引用文献 (1)