4d5y

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

60S RIBOSOMAL PROTEIN UL2

OrganismNot specified

UniProt G1TT27

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 43 RNA 3 60S RIBOSOMAL PROTEIN UL3 × 1 60S RIBOSOMAL PROTEIN UL4 × 1 60S RIBOSOMAL PROTEIN UL18 × 1 60S RIBOSOMAL PROTEIN EL6 × 1 60S RIBOSOMAL PROTEIN UL30 × 1 60S RIBOSOMAL PROTEIN EL8 × 1 60S RIBOSOMAL PROTEIN UL6 × 1 60S RIBOSOMAL PROTEIN UL16 × 1 60S RIBOSOMAL PROTEIN UL5 × 1 60S RIBOSOMAL PROTEIN EL13 × 1 60S RIBOSOMAL PROTEIN EL14 × 1 60S RIBOSOMAL PROTEIN EL15 × 1 60S RIBOSOMAL PROTEIN UL13 × 1 60S RIBOSOMAL PROTEIN UL22 × 1 60S RIBOSOMAL PROTEIN EL18 × 1 60S RIBOSOMAL PROTEIN UL19 × 1 60S RIBOSOMAL PROTEIN EL20 × 1 60S RIBOSOMAL PROTEIN EL21 × 1 60S RIBOSOMAL PROTEIN EL22 × 1 60S RIBOSOMAL PROTEIN UL14 × 1 60S RIBOSOMAL PROTEIN EL24 × 1 60S RIBOSOMAL PROTEIN UL23 × 1 60S RIBOSOMAL PROTEIN UL24 × 1 60S RIBOSOMAL PROTEIN EL27 × 1 60S RIBOSOMAL PROTEIN UL15 × 1 60S RIBOSOMAL PROTEIN EL29 × 1 60S RIBOSOMAL PROTEIN EL30 × 1 60S RIBOSOMAL PROTEIN EL31 × 1 60S RIBOSOMAL PROTEIN EL32 × 1 60S RIBOSOMAL PROTEIN EL33 × 1 60S RIBOSOMAL PROTEIN EL34 × 1 60S RIBOSOMAL PROTEIN UL29 × 1 60S RIBOSOMAL PROTEIN EL36 × 1 60S RIBOSOMAL PROTEIN EL37 × 1 60S RIBOSOMAL PROTEIN EL38 × 1 60S RIBOSOMAL PROTEIN EL39 × 1 60S RIBOSOMAL PROTEIN EL40 × 1 60S RIBOSOMAL PROTEIN EL41 × 1 60S RIBOSOMAL PROTEIN EL44 × 1 60S RIBOSOMAL PROTEIN EL43 × 1 60S RIBOSOMAL PROTEIN EL28 × 1 60S RIBOSOMAL PROTEIN UL1 × 1 28S Ribosomal RNA × 1 5.8S Ribosomal RNA × 1 5S Ribosomal RNA × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name G1TT27_RABIT
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–257; UniProt 1–257

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id4d5y
Deposition date deposition_date2014-11-07
Structure title titleCryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
Keywords keywordsCRPV IRES, RIBOSOME, TERMINATION, RELEASE FACTORS; RIBOSOME
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

4d5y__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

4d5y__assembly_1__model_1 | I(q)

10-2 10-1 107 108 109 1010 1011 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

4d5y__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)80.11 Å
Rg (electron density)80.64 Å
Total Rg80.67 Å
Atom count136495
Residues10459
Excluded volume2130400 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 4d5y__assembly_1__model_1 46-meric (46) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (46)

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7. Citations (1)