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9yq0

Vacant ribosome with P-site tRNA, substate 2, Structure Ib

Method: ELECTRON MICROSCOPY Dmax: 239.2 Å Quality: EXCELLENT

SAXS Profile

SAXS profile for 9yq0

P(r) Distribution

P(r) distribution for 9yq0
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1. Structure Basics

entry_id9yq0
deposition_date2025-10-14
titleVacant ribosome with P-site tRNA, substate 2, Structure Ib
keywordsGTPBP1, tRNA, GCP, complex, RIBOSOME; RIBOSOME
methodELECTRON MICROSCOPY
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Download Data

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2. SAXS Parameters (CRYSOL)

rg_guinier93.69 Å
rg_electron94.96 Å
i0286453000000.00
molecular_weight3158700.0 kDa
excluded_volume3371100 ų
envelope_volume5695800 ų
shell_volume452330 ų
envelope_diameter311.6 Å
shell_rg111.90 Å
envelope_rg94.20 Å
shape_rg95.03 Å
total_rg94.86 Å
total_atoms213916
n_residues17048
n_harmonics20
q_range— – 0.5000 Å−1
n_points101
shell_typedirectional
solvent_density0.3340 e/ų
contrast_shell0.0300 e/ų
crysol_version4.1.3
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3. P(r) Analysis (GNOM)

dmax239.2 Å
rg_real91.03 Å
rg_real_error0.39 Å
i0_real2.7450e+11
i0_real_error4.4390e+09
rg_reciprocal95.38 Å
i0_reciprocal288000000000.0000
total_estimate0.9131
solution_quality EXCELLENT a EXCELLENT solution
n_peaks1
r_peak_primary112.6 Å
skewness0.114
kurtosis-0.607
angular_range— – 0.0850 Å−1
current_alpha0.7289
highest_alpha19530000000.0000
n_real_points18
gnom_version4.1.3
quality_criteria AN1: 0.000; Oscil: 0.997; Stabil: 0.970; Sysdev: 1.000; Positv: 1.000; Valcen: 0.975; Smooth: 0.000
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4. Crystallography & Experiment

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5. Entities & Polymer Info (85)

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6. Citations (1)

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7. Files & Curves (10)