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9yq1

Vacant ribosome with P-site tRNA, substate 3, Structure Ic

Method: ELECTRON MICROSCOPY Dmax: 239.4 Å Quality: EXCELLENT

SAXS Profile

SAXS profile for 9yq1

P(r) Distribution

P(r) distribution for 9yq1

1. Structure Basics

entry_id9yq1
deposition_date2025-10-14
titleVacant ribosome with P-site tRNA, substate 3, Structure Ic
keywordsGTPBP1, tRNA, GCP, complex, RIBOSOME; RIBOSOME
methodELECTRON MICROSCOPY

Download Data

2. SAXS Parameters (CRYSOL)

rg_guinier93.77
rg_electron95.04
i0286455000000.00
molecular_weight3158700.0 kDa
excluded_volume3371100 ų
envelope_volume5712800 ų
shell_volume453030 ų
envelope_diameter313.0
shell_rg111.90
envelope_rg94.36
shape_rg95.11
total_rg94.94
total_atoms213916
n_residues17048
n_harmonics20
q_range— – 0.5000 −1
n_points101
shell_typedirectional
solvent_density0.3340 e/ų
contrast_shell0.0300 e/ų
crysol_version4.1.3

3. P(r) Analysis (GNOM)

dmax239.4
rg_real91.11
rg_real_error0.38
i0_real2.7450e+11
i0_real_error4.9130e+09
rg_reciprocal95.45
i0_reciprocal288000000000.0000
total_estimate0.9132
solution_quality EXCELLENT a EXCELLENT solution
n_peaks1
r_peak_primary112.7
skewness0.114
kurtosis-0.608
angular_range— – 0.0850 −1
current_alpha0.7232
highest_alpha19500000000.0000
n_real_points18
gnom_version4.1.3
quality_criteria AN1: 0.000; Oscil: 0.997; Stabil: 0.970; Sysdev: 1.000; Positv: 1.000; Valcen: 0.975; Smooth: 0.000

4. Crystallography & Experiment

5. Entities & Polymer Info (85)

6. Citations (1)

7. Files & Curves (10)