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9ypv

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId

Method: ELECTRON MICROSCOPY Dmax: 239.0 Å Quality: EXCELLENT

SAXS Profile

SAXS profile for 9ypv

P(r) Distribution

P(r) distribution for 9ypv

1. Structure Basics

entry_id9ypv
deposition_date2025-10-14
titleGTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId
keywordsGTPBP1, tRNA, GCP, complex, RIBOSOME; RIBOSOME
methodELECTRON MICROSCOPY

Download Data

2. SAXS Parameters (CRYSOL)

rg_guinier93.59
rg_electron94.86
i0299254000000.00
molecular_weight3240800.0 kDa
excluded_volume3465800 ų
envelope_volume5859300 ų
shell_volume465520 ų
envelope_diameter310.1
shell_rg112.70
envelope_rg93.99
shape_rg94.93
total_rg94.76
total_atoms219555
n_residues17634
n_harmonics20
q_range— – 0.5000 −1
n_points101
shell_typedirectional
solvent_density0.3340 e/ų
contrast_shell0.0300 e/ų
crysol_version4.1.3

3. P(r) Analysis (GNOM)

dmax239.0
rg_real90.99
rg_real_error0.32
i0_real2.8710e+11
i0_real_error4.6090e+09
rg_reciprocal95.38
i0_reciprocal301000000000.0000
total_estimate0.9142
solution_quality EXCELLENT a EXCELLENT solution
n_peaks1
r_peak_primary112.5
skewness0.113
kurtosis-0.597
angular_range— – 0.0850 −1
current_alpha0.6454
highest_alpha24770000000.0000
n_real_points18
gnom_version4.1.3
quality_criteria AN1: 0.000; Oscil: 0.996; Stabil: 0.976; Sysdev: 1.000; Positv: 1.000; Valcen: 0.976; Smooth: 0.000

4. Crystallography & Experiment

5. Entities & Polymer Info (92)

6. Citations (1)

7. Files & Curves (10)