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9ypg

GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III

Method: ELECTRON MICROSCOPY Dmax: 238.9 Å Quality: EXCELLENT

SAXS Profile

SAXS profile for 9ypg

P(r) Distribution

P(r) distribution for 9ypg
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1. Structure Basics

entry_id9ypg
deposition_date2025-10-14
titleGTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III
keywordsGTPBP1, tRNA, GCP, complex, RIBOSOME; RIBOSOME
methodELECTRON MICROSCOPY
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Download Data

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2. SAXS Parameters (CRYSOL)

rg_guinier93.56 Å
rg_electron94.82 Å
i0299253000000.00
molecular_weight3240800.0 kDa
excluded_volume3465800 ų
envelope_volume5837300 ų
shell_volume464270 ų
envelope_diameter310.0 Å
shell_rg112.60 Å
envelope_rg93.87 Å
shape_rg94.89 Å
total_rg94.72 Å
total_atoms219555
n_residues17634
n_harmonics20
q_range— – 0.5000 Å−1
n_points101
shell_typedirectional
solvent_density0.3340 e/ų
contrast_shell0.0300 e/ų
crysol_version4.1.3
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3. P(r) Analysis (GNOM)

dmax238.9 Å
rg_real90.95 Å
rg_real_error0.36 Å
i0_real2.8710e+11
i0_real_error4.7900e+09
rg_reciprocal95.34 Å
i0_reciprocal301000000000.0000
total_estimate0.9143
solution_quality EXCELLENT a EXCELLENT solution
n_peaks1
r_peak_primary112.4 Å
skewness0.114
kurtosis-0.597
angular_range— – 0.0850 Å−1
current_alpha0.6362
highest_alpha24870000000.0000
n_real_points18
gnom_version4.1.3
quality_criteria AN1: 0.000; Oscil: 0.995; Stabil: 0.976; Sysdev: 1.000; Positv: 1.000; Valcen: 0.976; Smooth: 0.000
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4. Crystallography & Experiment

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5. Entities & Polymer Info (92)

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6. Citations (1)

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7. Files & Curves (10)