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9ypy

Ribosome with accommodated A-site tRNA, Structure V

Method: ELECTRON MICROSCOPY Dmax: 238.3 Å Quality: EXCELLENT

SAXS Profile

SAXS profile for 9ypy

P(r) Distribution

P(r) distribution for 9ypy
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1. Structure Basics

entry_id9ypy
deposition_date2025-10-14
titleRibosome with accommodated A-site tRNA, Structure V
keywordsGTPBP1, tRNA, GCP, complex, RIBOSOME; RIBOSOME
methodELECTRON MICROSCOPY
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Download Data

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2. SAXS Parameters (CRYSOL)

rg_guinier93.31 Å
rg_electron94.64 Å
i0291961000000.00
molecular_weight3183400.0 kDa
excluded_volume3394000 ų
envelope_volume5698700 ų
shell_volume454170 ų
envelope_diameter313.3 Å
shell_rg111.50 Å
envelope_rg93.89 Å
shape_rg94.71 Å
total_rg94.53 Å
total_atoms215539
n_residues17121
n_harmonics20
q_range— – 0.5000 Å−1
n_points101
shell_typedirectional
solvent_density0.3340 e/ų
contrast_shell0.0300 e/ų
crysol_version4.1.3
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3. P(r) Analysis (GNOM)

dmax238.3 Å
rg_real90.66 Å
rg_real_error0.35 Å
i0_real2.8000e+11
i0_real_error4.2060e+09
rg_reciprocal94.98 Å
i0_reciprocal293500000000.0000
total_estimate0.9137
solution_quality EXCELLENT a EXCELLENT solution
n_peaks1
r_peak_primary112.1 Å
skewness0.121
kurtosis-0.599
angular_range— – 0.0850 Å−1
current_alpha0.6346
highest_alpha22660000000.0000
n_real_points18
gnom_version4.1.3
quality_criteria AN1: 0.000; Oscil: 0.995; Stabil: 0.974; Sysdev: 1.000; Positv: 1.000; Valcen: 0.977; Smooth: 0.000
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4. Crystallography & Experiment

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5. Entities & Polymer Info (88)

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6. Citations (1)

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7. Files & Curves (10)