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9ypw

GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV

Method: ELECTRON MICROSCOPY Dmax: 238.6 Å Quality: EXCELLENT

SAXS Profile

SAXS profile for 9ypw

P(r) Distribution

P(r) distribution for 9ypw
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1. Structure Basics

entry_id9ypw
deposition_date2025-10-14
titleGTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV
keywordsGTPBP1, tRNA, GCP, complex, RIBOSOME; RIBOSOME
methodELECTRON MICROSCOPY
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Download Data

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2. SAXS Parameters (CRYSOL)

rg_guinier93.45 Å
rg_electron94.72 Å
i0299230000000.00
molecular_weight3240700.0 kDa
excluded_volume3465800 ų
envelope_volume5819600 ų
shell_volume463350 ų
envelope_diameter313.1 Å
shell_rg112.50 Å
envelope_rg93.79 Å
shape_rg94.79 Å
total_rg94.62 Å
total_atoms219551
n_residues17634
n_harmonics20
q_range— – 0.5000 Å−1
n_points101
shell_typedirectional
solvent_density0.3340 e/ų
contrast_shell0.0300 e/ų
crysol_version4.1.3
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3. P(r) Analysis (GNOM)

dmax238.6 Å
rg_real90.85 Å
rg_real_error0.34 Å
i0_real2.8700e+11
i0_real_error5.0180e+09
rg_reciprocal95.23 Å
i0_reciprocal301000000000.0000
total_estimate0.9139
solution_quality EXCELLENT a EXCELLENT solution
n_peaks1
r_peak_primary112.3 Å
skewness0.113
kurtosis-0.597
angular_range— – 0.0850 Å−1
current_alpha0.6615
highest_alpha24410000000.0000
n_real_points18
gnom_version4.1.3
quality_criteria AN1: 0.000; Oscil: 0.996; Stabil: 0.974; Sysdev: 1.000; Positv: 1.000; Valcen: 0.976; Smooth: 0.000
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4. Crystallography & Experiment

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5. Entities & Polymer Info (92)

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6. Citations (2)

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7. Files & Curves (10)