4r7c

Crystal Structure of CNG mimicking NaK-ETPP mutant cocrystallized with DiMethylammonium

Method: X-RAY DIFFRACTION Dmax: 96.6 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

Potassium channel protein

Bacillus cereus ATCC 14579

UniProt Q81HW2

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain A; UniProt 20–110 Chain B; UniProt 20–110 Fragment:residues 20-110 Mutation:D66E, G67T, N68P, F69P GLY GLYCINE × 32 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 14 DMN DIMETHYLAMINE × 32 X-RAY DIFFRACTION X-ray crystallization conditions:pH 6.5;CNG-ETPP(DiMA+) cocrystals grown in 40-44% MPD, 100mM MES pH6.5 and 20-25 mM Glycine, VAPOR DIFFUSION, HANGING DROP Resolution 2.30 Å R-free 0.248
2 Protein homooligomer Homooligomer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain C; UniProt 20–110 Chain D; UniProt 20–110 Fragment:residues 20-110 Mutation:D66E, G67T, N68P, F69P GLY GLYCINE × 26 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 4 DMN DIMETHYLAMINE × 18 X-RAY DIFFRACTION X-ray crystallization conditions:pH 6.5;CNG-ETPP(DiMA+) cocrystals grown in 40-44% MPD, 100mM MES pH6.5 and 20-25 mM Glycine, VAPOR DIFFUSION, HANGING DROP Resolution 2.30 Å R-free 0.248

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

44 other PDB entries and 81 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q81HW2_BACCR
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 3–92; UniProt 20–110 Author chain B; PDBConstruct 3–92; UniProt 20–110 Author chain C; PDBConstruct 3–92; UniProt 20–110 Author chain D; PDBConstruct 3–92; UniProt 20–110

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 4r7c

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 4r7c
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2. Structure Basics 2. Structure Basics

Entry ID entry_id4r7c
Deposition date deposition_date2014-08-27
Structure title titleCrystal Structure of CNG mimicking NaK-ETPP mutant cocrystallized with DiMethylammonium
Keywords keywordsALPHA-HELICAL membrane protein, NaK-chimera channel in complex with DiMA+, TRANSPORT PROTEIN; TRANSPORT PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier25.92
Radius of gyration Rg (electron density) rg_electron25.11
Forward intensity I(0) i024127500.00
Molecular weight molecular_weight41724.0 kDa
Excluded volume excluded_volume54178 ų
Envelope volume envelope_volume69454 ų
Hydration-shell volume shell_volume24311 ų
Envelope diameter envelope_diameter103.0
Shell Rg shell_rg30.62
Envelope Rg envelope_rg25.63
Shape Rg shape_rg25.10
Total Rg total_rg25.90
Total atoms total_atoms2952
Residues n_residues364
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax96.6
Rg (real space) rg_real26.02
Rg uncertainty (real space) rg_real_error1.26
I(0) (real space) i0_real2.4130e+07
I(0) uncertainty (real space) i0_real_error4.4100e+05
Rg (reciprocal space) rg_reciprocal25.99
I(0) (reciprocal space) i0_reciprocal24130000.0000
Solution quality estimate total_estimate0.5754
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary30.1
Skewness Skewness skewness0.481
Kurtosis Kurtosis kurtosis-0.049
Angular range angular_range— – 0.3050 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha2530000.0000
Real-space data points n_real_points62
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.662; Stabil: 1.000; Sysdev: 0.221; Positv: 1.000; Valcen: 0.827; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (5)

7. Fold Classification (SCOP + CATH) 4 domains

CATH v4.4 (4 domains)

Domain ID domain_id4r7cA00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70
Domain ID domain_id4r7cB00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70
Domain ID domain_id4r7cC00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70
Domain ID domain_id4r7cD00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70

8. Citations (1)

9. Files and Curves (10)