5fc8

Mouse importin alpha: Dengue 3 NS5 C-terminal NLS peptide complex

Method: X-RAY DIFFRACTION Dmax: 98.5 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Nonstructural protein 5

Dengue virus 3

UniProt B6VDJ7

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain C; UniProt 50–85 Fragment:UNP residues 50-85 Importin subunit alpha-1 × 1 (P52293) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 7;296 K;1 M sodium citrate, 10 mM DTT Resolution 2.10 Å R-free 0.207

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name B6VDJ7_9FLAV
Isoform
PDB entities 1
Chains and sequence ranges Author chain C; PDBConstruct 1–36; UniProt 50–85

Importin subunit alpha-1

Mus musculus

UniProt P52293

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain E; UniProt 71–529 Fragment:UNP residues 71-529 Nonstructural protein 5 × 1 (B6VDJ7) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 7;296 K;1 M sodium citrate, 10 mM DTT Resolution 2.10 Å R-free 0.207

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

150 other PDB entries and 151 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name IMA1_MOUSE
Isoform
PDB entities 2
Chains and sequence ranges Author chain E; PDBConstruct 52–510; UniProt 71–529

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 5fc8

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 5fc8
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2. Structure Basics 2. Structure Basics

Entry ID entry_id5fc8
Deposition date deposition_date2015-12-15
Structure title titleMouse importin alpha: Dengue 3 NS5 C-terminal NLS peptide complex
Keywords keywordsDengue, NS5, Importin, PROTEIN TRANSPORT-Viral Protein complex; PROTEIN TRANSPORT/Viral Protein
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier28.33
Radius of gyration Rg (electron density) rg_electron28.08
Forward intensity I(0) i035637400.00
Molecular weight molecular_weight47904.0 kDa
Excluded volume excluded_volume60586 ų
Envelope volume envelope_volume74053 ų
Hydration-shell volume shell_volume23624 ų
Envelope diameter envelope_diameter102.0
Shell Rg shell_rg33.09
Envelope Rg envelope_rg28.22
Shape Rg shape_rg28.08
Total Rg total_rg28.57
Total atoms total_atoms3371
Residues n_residues440
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax98.5
Rg (real space) rg_real28.70
Rg uncertainty (real space) rg_real_error0.96
I(0) (real space) i0_real3.5640e+07
I(0) uncertainty (real space) i0_real_error4.8300e+05
Rg (reciprocal space) rg_reciprocal28.59
I(0) (reciprocal space) i0_reciprocal35630000.0000
Solution quality estimate total_estimate0.7981
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary22.9
Skewness Skewness skewness0.536
Kurtosis Kurtosis kurtosis-0.405
Angular range angular_range— – 0.2800 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha15240000.0000
Real-space data points n_real_points57
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.656; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.519; Smooth: 0.883

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

7. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd5fc8e_
Class classa — All alpha proteins
Fold Fold folda.118 — alpha-alpha superhelix
Superfamily Superfamily superfamilya.118.1 — ARM repeat
Family Family familya.118.1.0 — automated matches

CATH v4.4 (1 domains)

Domain ID domain_id5fc8E00
Class class1 — Mainly Alpha
Architecture architecture25 — Alpha Horseshoe
Topology topology10 — Leucine-rich Repeat Variant
Homologous superfamily homologous superfamily10 — Leucine-rich Repeat Variant

8. Citations (1)

9. Files and Curves (10)