← Back to search

9ytz

Structure of Ovine gammaherpesvirus 2 ORF73 LANA bound to importin alpha 2

Method: X-RAY DIFFRACTION D_max: 99.5 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	9ytz
deposition_date	2025-10-22
last_revision	2025-12-24
title	Structure of Ovine gammaherpesvirus 2 ORF73 LANA bound to importin alpha 2
keywords	Ovine gammaherpesvirus 2, importin, karyopherin, VIRUS, VIRAL PROTEIN; VIRAL PROTEIN
method	X-RAY DIFFRACTION

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	28.31 Å
rg_electron	28.03 Å
i0	34461000.00
molecular_weight	47306.0 kDa
excluded_volume	59926 Å³
envelope_volume	73205 Å³
shell_volume	23233 Å³
envelope_diameter	103.0 Å
shell_rg	33.26 Å
envelope_rg	28.19 Å
shape_rg	28.04 Å
total_rg	28.56 Å
total_atoms	3330
n_residues	436
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	99.5 Å
rg_real	28.67 Å
rg_real_error	0.92 Å
i0_real	3.4460e+07
i0_real_error	4.9790e+05
rg_reciprocal	28.56 Å
i0_reciprocal	34460000.0000
total_estimate	0.6176
solution_quality	REASONABLE a REASONABLE solution
n_peaks	2
r_peak_primary	23.1 Å
skewness	0.529
kurtosis	-0.415
angular_range	— – 0.2800 Å⁻¹
current_alpha	0.0000
highest_alpha	12070000.0000
n_real_points	57
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.639; Stabil: 1.000; Sysdev: 0.242; Positv: 1.000; Valcen: 0.479; Smooth: 0.901

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (2)

Entity 1 polymer

description	Importin subunit alpha-1
formula_weight	55268.5 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	E
atom_count	3330

MHHHHHHSSGLVPRGSGMLETAAALFERNHMDSPDLGTDDDDLAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAPGTFNF

Source

organism	Mus musculus
common_name	house mouse
ncbi_taxonomy_id	10090
host_organism	Escherichia coli

Entity 2 polymer

description	Latency associated antigen
formula_weight	3218.9 kDa
src_method	syn
entity_count	1

Polymer

type	polypeptide(L)
strand_id	C

RGRRKRPPKHQPETDRAKRKKLAPIW

▶

6. Citations (1)

▶

length_a	78.533 Å
length_b	90.105 Å
length_c	100.421 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	4

space_group	P 21 21 21
int_tables_number	19
crystal_system	orthorhombic

resolution	2.850 Å
resolution_low	29.600 Å
r_factor	0.2299
r_work	0.2280
r_free	0.2647

fit	/app/data/saxs_computation/yt/9ytz/9ytz.fit
pddf	/app/data/pr_computation/yt/9ytz/9ytz.pr.out
profile	/app/data/saxs_computation/yt/9ytz/9ytz.dat

Structure of Ovine gammaherpesvirus 2 ORF73 LANA bound to importin alpha 2

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)