9ytz

Structure of Ovine gammaherpesvirus 2 ORF73 LANA bound to importin alpha 2

Method: X-RAY DIFFRACTION Dmax: 99.5 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

Importin subunit alpha-1

Mus musculus

UniProt P52293

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain E; UniProt 70–529 Not recorded Latency associated antigen × 1 (Q918P0) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;296 K;0.6M sodium citrate, 0.1M HEPES pH 7.0, and 10mM DTT Resolution 2.85 Å R-free 0.265

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

150 other PDB entries and 151 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name IMA1_MOUSE
Isoform
PDB entities 1
Chains and sequence ranges Author chain E; PDBConstruct 51–510; UniProt 70–529

Latency associated antigen

OrganismNot specified

UniProt Q918P0

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain C; UniProt 375–400 Not recorded Importin subunit alpha-1 × 1 (P52293) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;296 K;0.6M sodium citrate, 0.1M HEPES pH 7.0, and 10mM DTT Resolution 2.85 Å R-free 0.265

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name Q918P0_9GAMA
Isoform
PDB entities 2
Chains and sequence ranges Author chain C; PDBConstruct 1–26; UniProt 375–400

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 9ytz

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 9ytz
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2. Structure Basics 2. Structure Basics

Entry ID entry_id9ytz
Deposition date deposition_date2025-10-22
最后修订 last_revision2025-12-24
Structure title titleStructure of Ovine gammaherpesvirus 2 ORF73 LANA bound to importin alpha 2
Keywords keywordsOvine gammaherpesvirus 2, importin, karyopherin, VIRUS, VIRAL PROTEIN; VIRAL PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier28.31
Radius of gyration Rg (electron density) rg_electron28.03
Forward intensity I(0) i034461000.00
Molecular weight molecular_weight47306.0 kDa
Excluded volume excluded_volume59926 ų
Envelope volume envelope_volume73205 ų
Hydration-shell volume shell_volume23233 ų
Envelope diameter envelope_diameter103.0
Shell Rg shell_rg33.26
Envelope Rg envelope_rg28.19
Shape Rg shape_rg28.04
Total Rg total_rg28.56
Total atoms total_atoms3330
Residues n_residues436
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax99.5
Rg (real space) rg_real28.67
Rg uncertainty (real space) rg_real_error0.92
I(0) (real space) i0_real3.4460e+07
I(0) uncertainty (real space) i0_real_error4.9790e+05
Rg (reciprocal space) rg_reciprocal28.56
I(0) (reciprocal space) i0_reciprocal34460000.0000
Solution quality estimate total_estimate0.6176
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary23.1
Skewness Skewness skewness0.529
Kurtosis Kurtosis kurtosis-0.415
Angular range angular_range— – 0.2800 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha12070000.0000
Real-space data points n_real_points57
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.639; Stabil: 1.000; Sysdev: 0.242; Positv: 1.000; Valcen: 0.479; Smooth: 0.901

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (2)

8. Citations (1)

9. Files and Curves (10)