6nwa

The structure of the photosystem I IsiA super-complex

Method: ELECTRON MICROSCOPY

1. Protein Identity and Related Structures Protein Identity & Related Structures

Photosystem I P700 chlorophyll a apoprotein A1

OrganismNot specified

UniProt P29254

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 51 Photosystem I P700 chlorophyll a apoprotein A2 × 3 (P29255) Photosystem I iron-sulfur center × 3 (P32422) Photosystem I reaction center subunit II × 3 (P19569) Photosystem I reaction center subunit IV × 3 (P12975) Photosystem I reaction center subunit III × 3 (P29256) Photosystem I reaction center subunit VIII × 3 (Q55330) Photosystem I reaction center subunit IX × 3 (Q55329) Photosystem I reaction center subunit XI × 3 (P37277) Photosystem I reaction center subunit XII × 3 (P72986) Iron stress-induced chlorophyll-binding protein × 18 (Q55274) Photosystem I reaction center subunit PsaK 1 × 3 (P72712) 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 9 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 15 CHLOROPHYLL A ISOMER × 3 CHLOROPHYLL A × 588 PHYLLOQUINONE × 6 IRON/SULFUR CLUSTER × 9 BETA-CAROTENE × 135 DODECYL-BETA-D-MALTOSIDE × 3 CALCIUM ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAA_SYNY3
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–751; UniProt 1–751 Author chain H; PDBConstruct 1–751; UniProt 1–751 Author chain a; PDBConstruct 1–751; UniProt 1–751

Photosystem I P700 chlorophyll a apoprotein A2

OrganismNot specified

UniProt P29255

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 51 Photosystem I P700 chlorophyll a apoprotein A1 × 3 (P29254) Photosystem I iron-sulfur center × 3 (P32422) Photosystem I reaction center subunit II × 3 (P19569) Photosystem I reaction center subunit IV × 3 (P12975) Photosystem I reaction center subunit III × 3 (P29256) Photosystem I reaction center subunit VIII × 3 (Q55330) Photosystem I reaction center subunit IX × 3 (Q55329) Photosystem I reaction center subunit XI × 3 (P37277) Photosystem I reaction center subunit XII × 3 (P72986) Iron stress-induced chlorophyll-binding protein × 18 (Q55274) Photosystem I reaction center subunit PsaK 1 × 3 (P72712) 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 9 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 15 CHLOROPHYLL A ISOMER × 3 CHLOROPHYLL A × 588 PHYLLOQUINONE × 6 IRON/SULFUR CLUSTER × 9 BETA-CAROTENE × 135 DODECYL-BETA-D-MALTOSIDE × 3 CALCIUM ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAB_SYNY3
Isoform
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–731; UniProt 1–731 Author chain G; PDBConstruct 1–731; UniProt 1–731 Author chain b; PDBConstruct 1–731; UniProt 1–731

Photosystem I iron-sulfur center

OrganismNot specified

UniProt P32422

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 51 Photosystem I P700 chlorophyll a apoprotein A1 × 3 (P29254) Photosystem I P700 chlorophyll a apoprotein A2 × 3 (P29255) Photosystem I reaction center subunit II × 3 (P19569) Photosystem I reaction center subunit IV × 3 (P12975) Photosystem I reaction center subunit III × 3 (P29256) Photosystem I reaction center subunit VIII × 3 (Q55330) Photosystem I reaction center subunit IX × 3 (Q55329) Photosystem I reaction center subunit XI × 3 (P37277) Photosystem I reaction center subunit XII × 3 (P72986) Iron stress-induced chlorophyll-binding protein × 18 (Q55274) Photosystem I reaction center subunit PsaK 1 × 3 (P72712) 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 9 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 15 CHLOROPHYLL A ISOMER × 3 CHLOROPHYLL A × 588 PHYLLOQUINONE × 6 IRON/SULFUR CLUSTER × 9 BETA-CAROTENE × 135 DODECYL-BETA-D-MALTOSIDE × 3 CALCIUM ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAC_SYNY3
Isoform
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–81; UniProt 1–81 Author chain N; PDBConstruct 1–81; UniProt 1–81 Author chain c; PDBConstruct 1–81; UniProt 1–81

Photosystem I reaction center subunit II

OrganismNot specified

UniProt P19569

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 51 Photosystem I P700 chlorophyll a apoprotein A1 × 3 (P29254) Photosystem I P700 chlorophyll a apoprotein A2 × 3 (P29255) Photosystem I iron-sulfur center × 3 (P32422) Photosystem I reaction center subunit IV × 3 (P12975) Photosystem I reaction center subunit III × 3 (P29256) Photosystem I reaction center subunit VIII × 3 (Q55330) Photosystem I reaction center subunit IX × 3 (Q55329) Photosystem I reaction center subunit XI × 3 (P37277) Photosystem I reaction center subunit XII × 3 (P72986) Iron stress-induced chlorophyll-binding protein × 18 (Q55274) Photosystem I reaction center subunit PsaK 1 × 3 (P72712) 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 9 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 15 CHLOROPHYLL A ISOMER × 3 CHLOROPHYLL A × 588 PHYLLOQUINONE × 6 IRON/SULFUR CLUSTER × 9 BETA-CAROTENE × 135 DODECYL-BETA-D-MALTOSIDE × 3 CALCIUM ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAD_SYNY3
Isoform
PDB entities 4
Chains and sequence ranges Author chain D; PDBConstruct 1–141; UniProt 1–141 Author chain O; PDBConstruct 1–141; UniProt 1–141 Author chain d; PDBConstruct 1–141; UniProt 1–141

Photosystem I reaction center subunit IV

OrganismNot specified

UniProt P12975

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 51 Photosystem I P700 chlorophyll a apoprotein A1 × 3 (P29254) Photosystem I P700 chlorophyll a apoprotein A2 × 3 (P29255) Photosystem I iron-sulfur center × 3 (P32422) Photosystem I reaction center subunit II × 3 (P19569) Photosystem I reaction center subunit III × 3 (P29256) Photosystem I reaction center subunit VIII × 3 (Q55330) Photosystem I reaction center subunit IX × 3 (Q55329) Photosystem I reaction center subunit XI × 3 (P37277) Photosystem I reaction center subunit XII × 3 (P72986) Iron stress-induced chlorophyll-binding protein × 18 (Q55274) Photosystem I reaction center subunit PsaK 1 × 3 (P72712) 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 9 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 15 CHLOROPHYLL A ISOMER × 3 CHLOROPHYLL A × 588 PHYLLOQUINONE × 6 IRON/SULFUR CLUSTER × 9 BETA-CAROTENE × 135 DODECYL-BETA-D-MALTOSIDE × 3 CALCIUM ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAE_SYNY3
Isoform
PDB entities 5
Chains and sequence ranges Author chain E; PDBConstruct 1–74; UniProt 1–74 Author chain P; PDBConstruct 1–74; UniProt 1–74 Author chain e; PDBConstruct 1–74; UniProt 1–74

Photosystem I reaction center subunit III

OrganismNot specified

UniProt P29256

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 51 Photosystem I P700 chlorophyll a apoprotein A1 × 3 (P29254) Photosystem I P700 chlorophyll a apoprotein A2 × 3 (P29255) Photosystem I iron-sulfur center × 3 (P32422) Photosystem I reaction center subunit II × 3 (P19569) Photosystem I reaction center subunit IV × 3 (P12975) Photosystem I reaction center subunit VIII × 3 (Q55330) Photosystem I reaction center subunit IX × 3 (Q55329) Photosystem I reaction center subunit XI × 3 (P37277) Photosystem I reaction center subunit XII × 3 (P72986) Iron stress-induced chlorophyll-binding protein × 18 (Q55274) Photosystem I reaction center subunit PsaK 1 × 3 (P72712) 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 9 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 15 CHLOROPHYLL A ISOMER × 3 CHLOROPHYLL A × 588 PHYLLOQUINONE × 6 IRON/SULFUR CLUSTER × 9 BETA-CAROTENE × 135 DODECYL-BETA-D-MALTOSIDE × 3 CALCIUM ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAF_SYNY3
Isoform
PDB entities 6
Chains and sequence ranges Author chain F; PDBConstruct 1–165; UniProt 1–165 Author chain Q; PDBConstruct 1–165; UniProt 1–165 Author chain f; PDBConstruct 1–165; UniProt 1–165

Photosystem I reaction center subunit VIII

OrganismNot specified

UniProt Q55330

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 51 Photosystem I P700 chlorophyll a apoprotein A1 × 3 (P29254) Photosystem I P700 chlorophyll a apoprotein A2 × 3 (P29255) Photosystem I iron-sulfur center × 3 (P32422) Photosystem I reaction center subunit II × 3 (P19569) Photosystem I reaction center subunit IV × 3 (P12975) Photosystem I reaction center subunit III × 3 (P29256) Photosystem I reaction center subunit IX × 3 (Q55329) Photosystem I reaction center subunit XI × 3 (P37277) Photosystem I reaction center subunit XII × 3 (P72986) Iron stress-induced chlorophyll-binding protein × 18 (Q55274) Photosystem I reaction center subunit PsaK 1 × 3 (P72712) 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 9 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 15 CHLOROPHYLL A ISOMER × 3 CHLOROPHYLL A × 588 PHYLLOQUINONE × 6 IRON/SULFUR CLUSTER × 9 BETA-CAROTENE × 135 DODECYL-BETA-D-MALTOSIDE × 3 CALCIUM ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAI_SYNY3
Isoform
PDB entities 7
Chains and sequence ranges Author chain I; PDBConstruct 1–40; UniProt 1–40 Author chain R; PDBConstruct 1–40; UniProt 1–40 Author chain i; PDBConstruct 1–40; UniProt 1–40

Photosystem I reaction center subunit IX

OrganismNot specified

UniProt Q55329

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 51 Photosystem I P700 chlorophyll a apoprotein A1 × 3 (P29254) Photosystem I P700 chlorophyll a apoprotein A2 × 3 (P29255) Photosystem I iron-sulfur center × 3 (P32422) Photosystem I reaction center subunit II × 3 (P19569) Photosystem I reaction center subunit IV × 3 (P12975) Photosystem I reaction center subunit III × 3 (P29256) Photosystem I reaction center subunit VIII × 3 (Q55330) Photosystem I reaction center subunit XI × 3 (P37277) Photosystem I reaction center subunit XII × 3 (P72986) Iron stress-induced chlorophyll-binding protein × 18 (Q55274) Photosystem I reaction center subunit PsaK 1 × 3 (P72712) 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 9 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 15 CHLOROPHYLL A ISOMER × 3 CHLOROPHYLL A × 588 PHYLLOQUINONE × 6 IRON/SULFUR CLUSTER × 9 BETA-CAROTENE × 135 DODECYL-BETA-D-MALTOSIDE × 3 CALCIUM ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAJ_SYNY3
Isoform
PDB entities 8
Chains and sequence ranges Author chain J; PDBConstruct 1–40; UniProt 1–40 Author chain S; PDBConstruct 1–40; UniProt 1–40 Author chain j; PDBConstruct 1–40; UniProt 1–40

Photosystem I reaction center subunit XI

OrganismNot specified

UniProt P37277

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 51 Photosystem I P700 chlorophyll a apoprotein A1 × 3 (P29254) Photosystem I P700 chlorophyll a apoprotein A2 × 3 (P29255) Photosystem I iron-sulfur center × 3 (P32422) Photosystem I reaction center subunit II × 3 (P19569) Photosystem I reaction center subunit IV × 3 (P12975) Photosystem I reaction center subunit III × 3 (P29256) Photosystem I reaction center subunit VIII × 3 (Q55330) Photosystem I reaction center subunit IX × 3 (Q55329) Photosystem I reaction center subunit XII × 3 (P72986) Iron stress-induced chlorophyll-binding protein × 18 (Q55274) Photosystem I reaction center subunit PsaK 1 × 3 (P72712) 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 9 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 15 CHLOROPHYLL A ISOMER × 3 CHLOROPHYLL A × 588 PHYLLOQUINONE × 6 IRON/SULFUR CLUSTER × 9 BETA-CAROTENE × 135 DODECYL-BETA-D-MALTOSIDE × 3 CALCIUM ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAL_SYNY3
Isoform
PDB entities 9
Chains and sequence ranges Author chain L; PDBConstruct 1–157; UniProt 1–157 Author chain U; PDBConstruct 1–157; UniProt 1–157 Author chain l; PDBConstruct 1–157; UniProt 1–157

Photosystem I reaction center subunit XII

OrganismNot specified

UniProt P72986

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 51 Photosystem I P700 chlorophyll a apoprotein A1 × 3 (P29254) Photosystem I P700 chlorophyll a apoprotein A2 × 3 (P29255) Photosystem I iron-sulfur center × 3 (P32422) Photosystem I reaction center subunit II × 3 (P19569) Photosystem I reaction center subunit IV × 3 (P12975) Photosystem I reaction center subunit III × 3 (P29256) Photosystem I reaction center subunit VIII × 3 (Q55330) Photosystem I reaction center subunit IX × 3 (Q55329) Photosystem I reaction center subunit XI × 3 (P37277) Iron stress-induced chlorophyll-binding protein × 18 (Q55274) Photosystem I reaction center subunit PsaK 1 × 3 (P72712) 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 9 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 15 CHLOROPHYLL A ISOMER × 3 CHLOROPHYLL A × 588 PHYLLOQUINONE × 6 IRON/SULFUR CLUSTER × 9 BETA-CAROTENE × 135 DODECYL-BETA-D-MALTOSIDE × 3 CALCIUM ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAM_SYNY3
Isoform
PDB entities 10
Chains and sequence ranges Author chain M; PDBConstruct 1–31; UniProt 1–31 Author chain V; PDBConstruct 1–31; UniProt 1–31 Author chain m; PDBConstruct 1–31; UniProt 1–31

Iron stress-induced chlorophyll-binding protein

OrganismNot specified

UniProt Q55274

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 51 Photosystem I P700 chlorophyll a apoprotein A1 × 3 (P29254) Photosystem I P700 chlorophyll a apoprotein A2 × 3 (P29255) Photosystem I iron-sulfur center × 3 (P32422) Photosystem I reaction center subunit II × 3 (P19569) Photosystem I reaction center subunit IV × 3 (P12975) Photosystem I reaction center subunit III × 3 (P29256) Photosystem I reaction center subunit VIII × 3 (Q55330) Photosystem I reaction center subunit IX × 3 (Q55329) Photosystem I reaction center subunit XI × 3 (P37277) Photosystem I reaction center subunit XII × 3 (P72986) Photosystem I reaction center subunit PsaK 1 × 3 (P72712) 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 9 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 15 CHLOROPHYLL A ISOMER × 3 CHLOROPHYLL A × 588 PHYLLOQUINONE × 6 IRON/SULFUR CLUSTER × 9 BETA-CAROTENE × 135 DODECYL-BETA-D-MALTOSIDE × 3 CALCIUM ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ISIA_SYNY3
Isoform
PDB entities 11
Chains and sequence ranges Author chain W; PDBConstruct 1–342; UniProt 1–342 Author chain X; PDBConstruct 1–342; UniProt 1–342 Author chain Y; PDBConstruct 1–342; UniProt 1–342 Author chain Z; PDBConstruct 1–342; UniProt 1–342 Author chain g; PDBConstruct 1–342; UniProt 1–342 Author chain h; PDBConstruct 1–342; UniProt 1–342 Author chain n; PDBConstruct 1–342; UniProt 1–342 Author chain o; PDBConstruct 1–342; UniProt 1–342 Author chain p; PDBConstruct 1–342; UniProt 1–342 Author chain q; PDBConstruct 1–342; UniProt 1–342 Author chain r; PDBConstruct 1–342; UniProt 1–342 Author chain s; PDBConstruct 1–342; UniProt 1–342 Author chain t; PDBConstruct 1–342; UniProt 1–342 Author chain u; PDBConstruct 1–342; UniProt 1–342 Author chain v; PDBConstruct 1–342; UniProt 1–342 Author chain w; PDBConstruct 1–342; UniProt 1–342 Author chain x; PDBConstruct 1–342; UniProt 1–342 Author chain y; PDBConstruct 1–342; UniProt 1–342

Photosystem I reaction center subunit PsaK 1

OrganismNot specified

UniProt P72712

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 51 Photosystem I P700 chlorophyll a apoprotein A1 × 3 (P29254) Photosystem I P700 chlorophyll a apoprotein A2 × 3 (P29255) Photosystem I iron-sulfur center × 3 (P32422) Photosystem I reaction center subunit II × 3 (P19569) Photosystem I reaction center subunit IV × 3 (P12975) Photosystem I reaction center subunit III × 3 (P29256) Photosystem I reaction center subunit VIII × 3 (Q55330) Photosystem I reaction center subunit IX × 3 (Q55329) Photosystem I reaction center subunit XI × 3 (P37277) Photosystem I reaction center subunit XII × 3 (P72986) Iron stress-induced chlorophyll-binding protein × 18 (Q55274) 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 9 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 15 CHLOROPHYLL A ISOMER × 3 CHLOROPHYLL A × 588 PHYLLOQUINONE × 6 IRON/SULFUR CLUSTER × 9 BETA-CAROTENE × 135 DODECYL-BETA-D-MALTOSIDE × 3 CALCIUM ION × 3 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAK1_SYNY3
Isoform
PDB entities 12
Chains and sequence ranges Author chain K; PDBConstruct 1–86; UniProt 1–86 Author chain T; PDBConstruct 1–86; UniProt 1–86 Author chain k; PDBConstruct 1–86; UniProt 1–86

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

2. Structure Basics 2. Structure Basics

Entry ID entry_id6nwa
Deposition date deposition_date2019-02-06
Structure title titleThe structure of the photosystem I IsiA super-complex
Keywords keywordsPhotosystem, Antenna, Chlorophyll, Membrane, PHOTOSYNTHESIS; PHOTOSYNTHESIS
Experimental Method methodELECTRON MICROSCOPY

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6nwa__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6nwa__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6nwa__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)97.02 Å
Rg (electron density)97.40 Å
Total Rg96.85 Å
Atom count137509
Residues12666
Excluded volume2567500 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6nwa__assembly_1__model_1 51-meric (51) Success 4.1.3-1-20251215 (887e7ef) View Download

4. Crystallography and Experiment 4. Crystallography & Experiment

5. Entities and Polymers Entities & Polymers (21)

7. Citations (1)