6vro

The structure of the PP2A B56 subunit AIM1 complex

Method: X-RAY DIFFRACTION Dmax: 93.0 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform

Homo sapiens

UniProt Q13362

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 62–411 Fragment:UNP residues 62-411 Beta/gamma crystallin domain-containing protein 1 × 1 (Q9Y4K1) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;289 K;0.1 M Tris, pH 8.0, 9% PEG8000, 0.9 M lithium chloride Resolution 2.45 Å R-free 0.235

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

20 other PDB entries and 25 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name 2A5G_HUMAN
Isoform Q13362-5
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 6–355; UniProt 62–411

Beta/gamma crystallin domain-containing protein 1

OrganismNot specified

UniProt Q9Y4K1

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain B; UniProt 716–741 Fragment:UNP residues 716-741 Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform × 1 (Q13362) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;289 K;0.1 M Tris, pH 8.0, 9% PEG8000, 0.9 M lithium chloride Resolution 2.45 Å R-free 0.235

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name CRBG1_HUMAN
Isoform Q9Y4K1-1
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–26; UniProt 716–741

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 6vro

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 6vro
Download Download

2. Structure Basics 2. Structure Basics

Entry ID entry_id6vro
Deposition date deposition_date2020-02-08
Structure title titleThe structure of the PP2A B56 subunit AIM1 complex
Keywords keywordsSer/thr phosphatase, complex, HYDROLASE; HYDROLASE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier24.99
Radius of gyration Rg (electron density) rg_electron24.56
Forward intensity I(0) i022586600.00
Molecular weight molecular_weight39139.0 kDa
Excluded volume excluded_volume50181 ų
Envelope volume envelope_volume59660 ų
Hydration-shell volume shell_volume21752 ų
Envelope diameter envelope_diameter102.6
Shell Rg shell_rg29.78
Envelope Rg envelope_rg25.05
Shape Rg shape_rg24.54
Total Rg total_rg25.34
Total atoms total_atoms2768
Residues n_residues333
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax93.0
Rg (real space) rg_real25.26
Rg uncertainty (real space) rg_real_error0.92
I(0) (real space) i0_real2.2590e+07
I(0) uncertainty (real space) i0_real_error3.3820e+05
Rg (reciprocal space) rg_reciprocal25.20
I(0) (reciprocal space) i0_reciprocal22590000.0000
Solution quality estimate total_estimate0.7004
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks3
Primary peak position r_peak_primary23.6
Skewness Skewness skewness0.586
Kurtosis Kurtosis kurtosis-0.112
Angular range angular_range— – 0.3200 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha5871000.0000
Real-space data points n_real_points64
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.531; Stabil: 0.998; Sysdev: 1.000; Positv: 1.000; Valcen: 0.513; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

7. Fold Classification (SCOP + CATH) 1 domains

CATH v4.4 (1 domains)

Domain ID domain_id6vroA00
Class class1 — Mainly Alpha
Architecture architecture25 — Alpha Horseshoe
Topology topology10 — Leucine-rich Repeat Variant
Homologous superfamily homologous superfamily10 — Leucine-rich Repeat Variant

8. Citations (1)

9. Files and Curves (10)