7nvw

TFIIH in a pre-translocated state (without ADP-BeF3)

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

TFIIH basal transcription factor complex helicase XPD subunit

Homo sapiens

UniProt P18074

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 11 DNA 2 General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) CDK-activating kinase assembly factor MAT1 × 1 (P51948) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) Non-template DNA × 1 Template DNA × 1 General transcription factor IIE subunit 1 × 1 (P29083) Unassigned Peptide, likely XPB × 1 Unassigned Peptide, likely TFIIE-Beta × 1 IRON/SULFUR CLUSTER × 1 ZINC ION × 7 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ERCC2_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain 0; PDBConstruct 1–760; UniProt 1–760

General transcription factor IIH subunit 1

Homo sapiens

UniProt P32780

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 11 DNA 2 TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 4 × 1 (Q92759) CDK-activating kinase assembly factor MAT1 × 1 (P51948) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) Non-template DNA × 1 Template DNA × 1 General transcription factor IIE subunit 1 × 1 (P29083) Unassigned Peptide, likely XPB × 1 Unassigned Peptide, likely TFIIE-Beta × 1 IRON/SULFUR CLUSTER × 1 ZINC ION × 7 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TF2H1_HUMAN
Isoform —
PDB entities 2
Chains and sequence ranges Author chain 1; PDBConstruct 1–548; UniProt 1–548

General transcription factor IIH subunit 4

Homo sapiens

UniProt Q92759

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 11 DNA 2 TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) CDK-activating kinase assembly factor MAT1 × 1 (P51948) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) Non-template DNA × 1 Template DNA × 1 General transcription factor IIE subunit 1 × 1 (P29083) Unassigned Peptide, likely XPB × 1 Unassigned Peptide, likely TFIIE-Beta × 1 IRON/SULFUR CLUSTER × 1 ZINC ION × 7 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TF2H4_HUMAN
Isoform —
PDB entities 3
Chains and sequence ranges Author chain 2; PDBConstruct 1–462; UniProt 1–462

CDK-activating kinase assembly factor MAT1

Homo sapiens

UniProt P51948

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 11 DNA 2 TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) Non-template DNA × 1 Template DNA × 1 General transcription factor IIE subunit 1 × 1 (P29083) Unassigned Peptide, likely XPB × 1 Unassigned Peptide, likely TFIIE-Beta × 1 IRON/SULFUR CLUSTER × 1 ZINC ION × 7 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name MAT1_HUMAN
Isoform —
PDB entities 4
Chains and sequence ranges Author chain 3; PDBConstruct 1–309; UniProt 1–309

General transcription factor IIH subunit 3

Homo sapiens

UniProt Q13889

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 11 DNA 2 TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) CDK-activating kinase assembly factor MAT1 × 1 (P51948) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) Non-template DNA × 1 Template DNA × 1 General transcription factor IIE subunit 1 × 1 (P29083) Unassigned Peptide, likely XPB × 1 Unassigned Peptide, likely TFIIE-Beta × 1 IRON/SULFUR CLUSTER × 1 ZINC ION × 7 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TF2H3_HUMAN
Isoform —
PDB entities 5
Chains and sequence ranges Author chain 4; PDBConstruct 1–308; UniProt 1–308

General transcription factor IIH subunit 5

Homo sapiens

UniProt Q6ZYL4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 11 DNA 2 TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) CDK-activating kinase assembly factor MAT1 × 1 (P51948) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) Non-template DNA × 1 Template DNA × 1 General transcription factor IIE subunit 1 × 1 (P29083) Unassigned Peptide, likely XPB × 1 Unassigned Peptide, likely TFIIE-Beta × 1 IRON/SULFUR CLUSTER × 1 ZINC ION × 7 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TF2H5_HUMAN
Isoform —
PDB entities 6
Chains and sequence ranges Author chain 5; PDBConstruct 1–71; UniProt 1–71

General transcription factor IIH subunit 2

Homo sapiens

UniProt Q13888

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 11 DNA 2 TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) CDK-activating kinase assembly factor MAT1 × 1 (P51948) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) Non-template DNA × 1 Template DNA × 1 General transcription factor IIE subunit 1 × 1 (P29083) Unassigned Peptide, likely XPB × 1 Unassigned Peptide, likely TFIIE-Beta × 1 IRON/SULFUR CLUSTER × 1 ZINC ION × 7 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TF2H2_HUMAN
Isoform —
PDB entities 7
Chains and sequence ranges Author chain 6; PDBConstruct 1–395; UniProt 1–395

General transcription and DNA repair factor IIH helicase subunit XPB

Homo sapiens

UniProt P19447

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 11 DNA 2 TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) CDK-activating kinase assembly factor MAT1 × 1 (P51948) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 2 × 1 (Q13888) Non-template DNA × 1 Template DNA × 1 General transcription factor IIE subunit 1 × 1 (P29083) Unassigned Peptide, likely XPB × 1 Unassigned Peptide, likely TFIIE-Beta × 1 IRON/SULFUR CLUSTER × 1 ZINC ION × 7 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ERCC3_HUMAN
Isoform —
PDB entities 8
Chains and sequence ranges Author chain 7; PDBConstruct 1–782; UniProt 1–782

General transcription factor IIE subunit 1

Homo sapiens

UniProt P29083

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 11 DNA 2 TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) CDK-activating kinase assembly factor MAT1 × 1 (P51948) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) Non-template DNA × 1 Template DNA × 1 Unassigned Peptide, likely XPB × 1 Unassigned Peptide, likely TFIIE-Beta × 1 IRON/SULFUR CLUSTER × 1 ZINC ION × 7 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name T2EA_HUMAN
Isoform —
PDB entities 11
Chains and sequence ranges Author chain W; PDBConstruct 1–439; UniProt 1–439

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id7nvw
Deposition date deposition_date2021-03-16
Structure title titleTFIIH in a pre-translocated state (without ADP-BeF3)
Keywords keywordsInitiation, TRANSCRIPTION; TRANSCRIPTION
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

7nvw__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

7nvw__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

7nvw__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)55.58 Å
Rg (electron density)55.09 Å
Total Rg55.31 Å
Atom count23647
Residues2883
Excluded volume421250 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 7nvw__assembly_1__model_1 tridecameric (13) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (15)

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7. Citations (1)