7ad8

Core TFIIH-XPA-DNA complex with modelled p62 subunit

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

General transcription and DNA repair factor IIH helicase subunit XPB

Homo sapiens

UniProt P19447

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 8 DNA 2 DNA (49-MER) × 1 DNA (49-MER) × 1 General transcription factor IIH subunit 5 × 1 (Q6ZYL4) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 4 × 1 (Q92759) DNA repair protein complementing XP-A cells × 1 (P23025) General transcription factor IIH subunit 1 × 1 (P32780) IRON/SULFUR CLUSTER × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ERCC3_HUMAN
Isoform —
PDB entities 3
Chains and sequence ranges Author chain A; PDBConstruct 1–782; UniProt 1–782

General transcription factor IIH subunit 5

Homo sapiens

UniProt Q6ZYL4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 8 DNA 2 DNA (49-MER) × 1 DNA (49-MER) × 1 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 4 × 1 (Q92759) DNA repair protein complementing XP-A cells × 1 (P23025) General transcription factor IIH subunit 1 × 1 (P32780) IRON/SULFUR CLUSTER × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TF2H5_HUMAN
Isoform —
PDB entities 4
Chains and sequence ranges Author chain F; PDBConstruct 1–71; UniProt 1–71

TFIIH basal transcription factor complex helicase XPD subunit

Homo sapiens

UniProt P18074

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 8 DNA 2 DNA (49-MER) × 1 DNA (49-MER) × 1 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 4 × 1 (Q92759) DNA repair protein complementing XP-A cells × 1 (P23025) General transcription factor IIH subunit 1 × 1 (P32780) IRON/SULFUR CLUSTER × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ERCC2_HUMAN
Isoform —
PDB entities 5
Chains and sequence ranges Author chain B; PDBConstruct 1–760; UniProt 1–760

General transcription factor IIH subunit 3

Homo sapiens

UniProt Q13889

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 8 DNA 2 DNA (49-MER) × 1 DNA (49-MER) × 1 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 4 × 1 (Q92759) DNA repair protein complementing XP-A cells × 1 (P23025) General transcription factor IIH subunit 1 × 1 (P32780) IRON/SULFUR CLUSTER × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TF2H3_HUMAN
Isoform —
PDB entities 6
Chains and sequence ranges Author chain E; PDBConstruct 1–308; UniProt 1–308

General transcription factor IIH subunit 2

Homo sapiens

UniProt Q13888

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 8 DNA 2 DNA (49-MER) × 1 DNA (49-MER) × 1 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 4 × 1 (Q92759) DNA repair protein complementing XP-A cells × 1 (P23025) General transcription factor IIH subunit 1 × 1 (P32780) IRON/SULFUR CLUSTER × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TF2H2_HUMAN
Isoform —
PDB entities 7
Chains and sequence ranges Author chain D; PDBConstruct 1–395; UniProt 1–395

General transcription factor IIH subunit 4

Homo sapiens

UniProt Q92759

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 8 DNA 2 DNA (49-MER) × 1 DNA (49-MER) × 1 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 2 × 1 (Q13888) DNA repair protein complementing XP-A cells × 1 (P23025) General transcription factor IIH subunit 1 × 1 (P32780) IRON/SULFUR CLUSTER × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TF2H4_HUMAN
Isoform —
PDB entities 8
Chains and sequence ranges Author chain C; PDBConstruct 1–462; UniProt 1–462

DNA repair protein complementing XP-A cells

Homo sapiens

UniProt P23025

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 8 DNA 2 DNA (49-MER) × 1 DNA (49-MER) × 1 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 1 × 1 (P32780) IRON/SULFUR CLUSTER × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name XPA_HUMAN
Isoform —
PDB entities 9
Chains and sequence ranges Author chain G; PDBConstruct 1–273; UniProt 1–273

General transcription factor IIH subunit 1

Homo sapiens

UniProt P32780

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 8 DNA 2 DNA (49-MER) × 1 DNA (49-MER) × 1 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 4 × 1 (Q92759) DNA repair protein complementing XP-A cells × 1 (P23025) IRON/SULFUR CLUSTER × 1 ZINC ION × 6 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TF2H1_HUMAN
Isoform —
PDB entities 10
Chains and sequence ranges Author chain I; PDBConstruct 1–548; UniProt 1–548

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id7ad8
Deposition date deposition_date2020-09-14
Structure title titleCore TFIIH-XPA-DNA complex with modelled p62 subunit
Keywords keywordsDNA repair, transcription factor, DNA BINDING PROTEIN; DNA BINDING PROTEIN
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

7ad8__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

7ad8__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

7ad8__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)51.46 Å
Rg (electron density)51.40 Å
Total Rg51.50 Å
Atom count21213
Residues2602
Excluded volume377240 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 7ad8__assembly_1__model_1 decameric (10) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (12)

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7. Citations (1)