8bvw

RNA polymerase II pre-initiation complex with the distal +1 nucleosome (PIC-Nuc18W)

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

General transcription and DNA repair factor IIH helicase subunit XPB

Homo sapiens

UniProt P19447

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-dependent kinase 7 × 1 (P50613) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (I3LN51) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A type 1 × 2 (P06897) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ERCC3_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain 0; PDBConstruct 1–772; UniProt 1–772

TFIIH basal transcription factor complex helicase XPD subunit

Homo sapiens

UniProt P18074

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-dependent kinase 7 × 1 (P50613) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (I3LN51) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A type 1 × 2 (P06897) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ERCC2_HUMAN
Isoform —
PDB entities 2
Chains and sequence ranges Author chain 1; PDBConstruct 1–760; UniProt 1–760

General transcription factor IIH subunit 1

Homo sapiens

UniProt P32780

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-dependent kinase 7 × 1 (P50613) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (I3LN51) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A type 1 × 2 (P06897) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TF2H1_HUMAN
Isoform —
PDB entities 3
Chains and sequence ranges Author chain 2; PDBConstruct 1–548; UniProt 1–548

General transcription factor IIH subunit 4

Homo sapiens

UniProt Q92759

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-dependent kinase 7 × 1 (P50613) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (I3LN51) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A type 1 × 2 (P06897) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TF2H4_HUMAN
Isoform —
PDB entities 4
Chains and sequence ranges Author chain 3; PDBConstruct 1–462; UniProt 1–462

General transcription factor IIH subunit 2

Homo sapiens

UniProt Q13888

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-dependent kinase 7 × 1 (P50613) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (I3LN51) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A type 1 × 2 (P06897) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TF2H2_HUMAN
Isoform —
PDB entities 5
Chains and sequence ranges Author chain 4; PDBConstruct 1–395; UniProt 1–395

General transcription factor IIH subunit 3

Homo sapiens

UniProt Q13889

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-dependent kinase 7 × 1 (P50613) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (I3LN51) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A type 1 × 2 (P06897) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TF2H3_HUMAN
Isoform —
PDB entities 6
Chains and sequence ranges Author chain 5; PDBConstruct 1–308; UniProt 1–308

General transcription factor IIH subunit 5

Homo sapiens

UniProt Q6ZYL4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 3 × 1 (Q13889) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-dependent kinase 7 × 1 (P50613) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (I3LN51) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A type 1 × 2 (P06897) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TF2H5_HUMAN
Isoform —
PDB entities 7
Chains and sequence ranges Author chain 6; PDBConstruct 1–71; UniProt 1–71

CDK-activating kinase assembly factor MAT1

Homo sapiens

UniProt P51948

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) Cyclin-dependent kinase 7 × 1 (P50613) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (I3LN51) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A type 1 × 2 (P06897) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name MAT1_HUMAN
Isoform —
PDB entities 8
Chains and sequence ranges Author chain 7; PDBConstruct 1–309; UniProt 1–309

Cyclin-dependent kinase 7

Homo sapiens

UniProt P50613

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (I3LN51) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A type 1 × 2 (P06897) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CDK7_HUMAN
Isoform —
PDB entities 9
Chains and sequence ranges Author chain 8; PDBConstruct 1–346; UniProt 1–346

Cyclin-H

Homo sapiens

UniProt P51946

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-dependent kinase 7 × 1 (P50613) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (I3LN51) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A type 1 × 2 (P06897) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CCNH_HUMAN
Isoform —
PDB entities 10
Chains and sequence ranges Author chain 9; PDBConstruct 1–323; UniProt 1–323

DNA-directed RNA polymerase subunit

OrganismNot specified

UniProt A0A7M4DUC2

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-dependent kinase 7 × 1 (P50613) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (I3LN51) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A type 1 × 2 (P06897) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A7M4DUC2_PIG
Isoform —
PDB entities 11
Chains and sequence ranges Author chain A; PDBConstruct 1–1970; UniProt 1–1984

DNA-directed RNA polymerase subunit beta

OrganismNot specified

UniProt I3LGP4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-dependent kinase 7 × 1 (P50613) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (I3LN51) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A type 1 × 2 (P06897) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name I3LGP4_PIG
Isoform —
PDB entities 12
Chains and sequence ranges Author chain B; PDBConstruct 1–1174; UniProt 78–1251

DNA-directed RNA polymerase II subunit RPB3

OrganismNot specified

UniProt I3LCH3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-dependent kinase 7 × 1 (P50613) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (I3LN51) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A type 1 × 2 (P06897) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name I3LCH3_PIG
Isoform —
PDB entities 13
Chains and sequence ranges Author chain C; PDBConstruct 1–275; UniProt 1–275

RNA polymerase II subunit D

OrganismNot specified

UniProt A0A287ADR4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-dependent kinase 7 × 1 (P50613) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (I3LN51) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A type 1 × 2 (P06897) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A287ADR4_PIG
Isoform —
PDB entities 14
Chains and sequence ranges Author chain D; PDBConstruct 1–142; UniProt 43–184

DNA-directed RNA polymerase II subunit E

OrganismNot specified

UniProt I3LSI7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-dependent kinase 7 × 1 (P50613) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (I3LN51) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A type 1 × 2 (P06897) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name I3LSI7_PIG
Isoform —
PDB entities 15
Chains and sequence ranges Author chain E; PDBConstruct 1–210; UniProt 1–210

DNA-directed RNA polymerase II subunit F

OrganismNot specified

UniProt F1SKN8

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-dependent kinase 7 × 1 (P50613) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (I3LN51) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A type 1 × 2 (P06897) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name F1SKN8_PIG
Isoform —
PDB entities 16
Chains and sequence ranges Author chain F; PDBConstruct 1–127; UniProt 1–127

DNA-directed RNA polymerase II subunit RPB7

OrganismNot specified

UniProt A0A4X1VKG7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-dependent kinase 7 × 1 (P50613) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (I3LN51) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A type 1 × 2 (P06897) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A4X1VKG7_PIG
Isoform —
PDB entities 17
Chains and sequence ranges Author chain G; PDBConstruct 1–172; UniProt 1–172

DNA-directed RNA polymerases I, II, and III subunit RPABC3

OrganismNot specified

UniProt I3LCB2

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-dependent kinase 7 × 1 (P50613) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (I3LN51) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A type 1 × 2 (P06897) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name I3LCB2_PIG
Isoform —
PDB entities 18
Chains and sequence ranges Author chain H; PDBConstruct 1–150; UniProt 1–150

DNA-directed RNA polymerase II subunit RPB9

OrganismNot specified

UniProt P60899

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-dependent kinase 7 × 1 (P50613) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (I3LN51) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A type 1 × 2 (P06897) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPB9_PIG
Isoform —
PDB entities 19
Chains and sequence ranges Author chain I; PDBConstruct 1–125; UniProt 1–125

DNA-directed RNA polymerases I, II, and III subunit RPABC5

OrganismNot specified

UniProt A0A4X1VYD0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-dependent kinase 7 × 1 (P50613) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (I3LN51) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A type 1 × 2 (P06897) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A4X1VYD0_PIG
Isoform —
PDB entities 20
Chains and sequence ranges Author chain J; PDBConstruct 1–67; UniProt 1–67

DNA-directed RNA polymerase II subunit RPB11-a

OrganismNot specified

UniProt F1RKE4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-dependent kinase 7 × 1 (P50613) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) RNA polymerase II subunit K × 1 (I3LN51) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A type 1 × 2 (P06897) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name F1RKE4_PIG
Isoform —
PDB entities 21
Chains and sequence ranges Author chain K; PDBConstruct 1–117; UniProt 1–117

RNA polymerase II subunit K

OrganismNot specified

UniProt I3LN51

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-dependent kinase 7 × 1 (P50613) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A type 1 × 2 (P06897) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name I3LN51_PIG
Isoform —
PDB entities 22
Chains and sequence ranges Author chain L; PDBConstruct 1–58; UniProt 1–58

Transcription initiation factor IIB

Homo sapiens

UniProt Q00403

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-dependent kinase 7 × 1 (P50613) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (I3LN51) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A type 1 × 2 (P06897) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TF2B_HUMAN
Isoform —
PDB entities 23
Chains and sequence ranges Author chain M; PDBConstruct 1–316; UniProt 1–316

TATA-box-binding protein

Homo sapiens

UniProt P20226

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-dependent kinase 7 × 1 (P50613) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (I3LN51) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A type 1 × 2 (P06897) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TBP_HUMAN
Isoform —
PDB entities 25
Chains and sequence ranges Author chain O; PDBConstruct 1–339; UniProt 1–339

General transcription factor IIF subunit 1

Homo sapiens

UniProt P35269

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-dependent kinase 7 × 1 (P50613) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (I3LN51) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A type 1 × 2 (P06897) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name T2FA_HUMAN
Isoform —
PDB entities 26
Chains and sequence ranges Author chain Q; PDBConstruct 1–517; UniProt 1–517

General transcription factor IIF subunit 2

Homo sapiens

UniProt P13984

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-dependent kinase 7 × 1 (P50613) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (I3LN51) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 1 × 1 (P35269) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A type 1 × 2 (P06897) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name T2FB_HUMAN
Isoform —
PDB entities 27
Chains and sequence ranges Author chain R; PDBConstruct 1–249; UniProt 1–249

Transcription initiation factor IIA subunit 1

Homo sapiens

UniProt P52655

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-dependent kinase 7 × 1 (P50613) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (I3LN51) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A type 1 × 2 (P06897) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TF2AA_HUMAN
Isoform —
PDB entities 29
Chains and sequence ranges Author chain U; PDBConstruct 1–376; UniProt 1–376

Transcription initiation factor IIA subunit 2

Homo sapiens

UniProt P52657

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-dependent kinase 7 × 1 (P50613) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (I3LN51) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A type 1 × 2 (P06897) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name T2AG_HUMAN
Isoform —
PDB entities 30
Chains and sequence ranges Author chain V; PDBConstruct 1–109; UniProt 1–109

General transcription factor IIE subunit 1

Homo sapiens

UniProt P29083

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-dependent kinase 7 × 1 (P50613) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (I3LN51) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A type 1 × 2 (P06897) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name T2EA_HUMAN
Isoform —
PDB entities 31
Chains and sequence ranges Author chain W; PDBConstruct 1–273; UniProt 1–273 Author chain W; PDBConstruct 274–439; UniProt 274–439

Transcription initiation factor IIE subunit beta

Homo sapiens

UniProt P29084

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-dependent kinase 7 × 1 (P50613) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (I3LN51) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A type 1 × 2 (P06897) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name T2EB_HUMAN
Isoform —
PDB entities 32
Chains and sequence ranges Author chain X; PDBConstruct 1–291; UniProt 1–291

Histone H3.2

Xenopus laevis

UniProt P84233

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-dependent kinase 7 × 1 (P50613) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (I3LN51) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H4 × 2 (P62799) Histone H2A type 1 × 2 (P06897) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name H32_XENLA
Isoform —
PDB entities 35
Chains and sequence ranges Author chain a; PDBConstruct 1–136; UniProt 1–136 Author chain e; PDBConstruct 1–136; UniProt 1–136

Histone H4

Xenopus laevis

UniProt P62799

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-dependent kinase 7 × 1 (P50613) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (I3LN51) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H2A type 1 × 2 (P06897) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name H4_XENLA
Isoform —
PDB entities 36
Chains and sequence ranges Author chain b; PDBConstruct 1–103; UniProt 1–103 Author chain f; PDBConstruct 1–103; UniProt 1–103

Histone H2A type 1

Xenopus laevis

UniProt P06897

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-dependent kinase 7 × 1 (P50613) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (I3LN51) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2B 1.1 × 2 (P02281) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name H2A1_XENLA
Isoform —
PDB entities 37
Chains and sequence ranges Author chain c; PDBConstruct 1–130; UniProt 1–130 Author chain g; PDBConstruct 1–130; UniProt 1–130

Histone H2B 1.1

Xenopus laevis

UniProt P02281

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 40 DNA 2 General transcription and DNA repair factor IIH helicase subunit XPB × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 1 × 1 (P32780) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 3 × 1 (Q13889) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) CDK-activating kinase assembly factor MAT1 × 1 (P51948) Cyclin-dependent kinase 7 × 1 (P50613) Cyclin-H × 1 (P51946) DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit F × 1 (F1SKN8) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (I3LN51) Transcription initiation factor IIB × 1 (Q00403) Non-template DNA × 1 TATA-box-binding protein × 1 (P20226) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Template DNA × 1 Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) Unassigned peptide, likely XPB × 1 Unassigned peptide, likely TFIIE-beta × 1 Histone H3.2 × 2 (P84233) Histone H4 × 2 (P62799) Histone H2A type 1 × 2 (P06897) IRON/SULFUR CLUSTER × 1 ZINC ION × 17 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name H2B11_XENLA
Isoform —
PDB entities 38
Chains and sequence ranges Author chain d; PDBConstruct 1–126; UniProt 1–126 Author chain h; PDBConstruct 1–126; UniProt 1–126

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id8bvw
Deposition date deposition_date2022-12-20
Structure title titleRNA polymerase II pre-initiation complex with the distal +1 nucleosome (PIC-Nuc18W)
Keywords keywordsMammalian PIC, +1 nucleosome, transcription initiation, TRANSCRIPTION; TRANSCRIPTION
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

8bvw__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

8bvw__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

8bvw__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)94.53 Å
Rg (electron density)92.75 Å
Total Rg93.02 Å
Atom count84783
Residues9949
Excluded volume1488000 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 8bvw__assembly_1__model_1 42-meric (42) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (41)

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7. Citations (1)