6exv

Structure of mammalian RNA polymerase II elongation complex inhibited by Alpha-amanitin

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1

OrganismNot specified

UniProt I3LJR4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 13 DNA 2 RNA 1 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 × 1 (I3LGP4) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (I3LCH3) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (A0A287ADR4) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 × 1 (I3LSI7) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 × 1 (F1SKN8) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 × 1 (I3LJZ9) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 × 1 (F1RKE4) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 × 1 (I3LN51) AMATOXIN × 1 (P85421) DNA (25-MER) × 1 ;RNA (5'-R(P*CP*AP*UP*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3') ; × 1 DNA (36-MER) × 1 ZINC ION × 8 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name I3LJR4_PIG
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–1970; UniProt 1–1959

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2

OrganismNot specified

UniProt I3LGP4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 13 DNA 2 RNA 1 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 × 1 (I3LJR4) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (I3LCH3) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (A0A287ADR4) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 × 1 (I3LSI7) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 × 1 (F1SKN8) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 × 1 (I3LJZ9) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 × 1 (F1RKE4) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 × 1 (I3LN51) AMATOXIN × 1 (P85421) DNA (25-MER) × 1 ;RNA (5'-R(P*CP*AP*UP*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3') ; × 1 DNA (36-MER) × 1 ZINC ION × 8 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name I3LGP4_PIG
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–1167; UniProt 85–1251

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3

OrganismNot specified

UniProt I3LCH3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 13 DNA 2 RNA 1 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 × 1 (I3LJR4) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 × 1 (I3LGP4) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (A0A287ADR4) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 × 1 (I3LSI7) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 × 1 (F1SKN8) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 × 1 (I3LJZ9) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 × 1 (F1RKE4) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 × 1 (I3LN51) AMATOXIN × 1 (P85421) DNA (25-MER) × 1 ;RNA (5'-R(P*CP*AP*UP*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3') ; × 1 DNA (36-MER) × 1 ZINC ION × 8 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name I3LCH3_PIG
Isoform —
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–275; UniProt 1–275

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3

OrganismNot specified

UniProt A0A287ADR4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 13 DNA 2 RNA 1 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 × 1 (I3LJR4) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 × 1 (I3LGP4) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (I3LCH3) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 × 1 (I3LSI7) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 × 1 (F1SKN8) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 × 1 (I3LJZ9) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 × 1 (F1RKE4) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 × 1 (I3LN51) AMATOXIN × 1 (P85421) DNA (25-MER) × 1 ;RNA (5'-R(P*CP*AP*UP*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3') ; × 1 DNA (36-MER) × 1 ZINC ION × 8 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A287ADR4_PIG
Isoform —
PDB entities 4
Chains and sequence ranges Author chain D; PDBConstruct 1–142; UniProt 1–142

DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1

OrganismNot specified

UniProt I3LSI7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 13 DNA 2 RNA 1 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 × 1 (I3LJR4) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 × 1 (I3LGP4) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (I3LCH3) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (A0A287ADR4) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 × 1 (F1SKN8) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 × 1 (I3LJZ9) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 × 1 (F1RKE4) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 × 1 (I3LN51) AMATOXIN × 1 (P85421) DNA (25-MER) × 1 ;RNA (5'-R(P*CP*AP*UP*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3') ; × 1 DNA (36-MER) × 1 ZINC ION × 8 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name I3LSI7_PIG
Isoform —
PDB entities 5
Chains and sequence ranges Author chain E; PDBConstruct 1–210; UniProt 1–210

DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1

OrganismNot specified

UniProt F1SKN8

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 13 DNA 2 RNA 1 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 × 1 (I3LJR4) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 × 1 (I3LGP4) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (I3LCH3) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (A0A287ADR4) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 × 1 (I3LSI7) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 × 1 (I3LJZ9) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 × 1 (F1RKE4) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 × 1 (I3LN51) AMATOXIN × 1 (P85421) DNA (25-MER) × 1 ;RNA (5'-R(P*CP*AP*UP*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3') ; × 1 DNA (36-MER) × 1 ZINC ION × 8 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name F1SKN8_PIG
Isoform —
PDB entities 6
Chains and sequence ranges Author chain F; PDBConstruct 1–127; UniProt 1–127

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7

OrganismNot specified

UniProt I3LJZ9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 13 DNA 2 RNA 1 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 × 1 (I3LJR4) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 × 1 (I3LGP4) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (I3LCH3) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (A0A287ADR4) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 × 1 (I3LSI7) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 × 1 (F1SKN8) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 × 1 (F1RKE4) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 × 1 (I3LN51) AMATOXIN × 1 (P85421) DNA (25-MER) × 1 ;RNA (5'-R(P*CP*AP*UP*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3') ; × 1 DNA (36-MER) × 1 ZINC ION × 8 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name I3LJZ9_PIG
Isoform —
PDB entities 7
Chains and sequence ranges Author chain G; PDBConstruct 1–172; UniProt 1–172

DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3

OrganismNot specified

UniProt I3LCB2

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 13 DNA 2 RNA 1 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 × 1 (I3LJR4) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 × 1 (I3LGP4) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (I3LCH3) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (A0A287ADR4) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 × 1 (I3LSI7) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 × 1 (F1SKN8) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 × 1 (I3LJZ9) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 × 1 (F1RKE4) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 × 1 (I3LN51) AMATOXIN × 1 (P85421) DNA (25-MER) × 1 ;RNA (5'-R(P*CP*AP*UP*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3') ; × 1 DNA (36-MER) × 1 ZINC ION × 8 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name I3LCB2_PIG
Isoform —
PDB entities 8
Chains and sequence ranges Author chain H; PDBConstruct 1–150; UniProt 1–150

DNA-directed RNA polymerase II subunit RPB9

OrganismNot specified

UniProt P60899

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 13 DNA 2 RNA 1 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 × 1 (I3LJR4) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 × 1 (I3LGP4) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (I3LCH3) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (A0A287ADR4) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 × 1 (I3LSI7) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 × 1 (F1SKN8) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 × 1 (I3LJZ9) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 × 1 (F1RKE4) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 × 1 (I3LN51) AMATOXIN × 1 (P85421) DNA (25-MER) × 1 ;RNA (5'-R(P*CP*AP*UP*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3') ; × 1 DNA (36-MER) × 1 ZINC ION × 8 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPB9_PIG
Isoform —
PDB entities 9
Chains and sequence ranges Author chain I; PDBConstruct 1–125; UniProt 1–125

DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4

OrganismNot specified

UniProt F1RKE4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 13 DNA 2 RNA 1 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 × 1 (I3LJR4) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 × 1 (I3LGP4) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (I3LCH3) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (A0A287ADR4) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 × 1 (I3LSI7) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 × 1 (F1SKN8) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 × 1 (I3LJZ9) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 × 1 (I3LN51) AMATOXIN × 1 (P85421) DNA (25-MER) × 1 ;RNA (5'-R(P*CP*AP*UP*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3') ; × 1 DNA (36-MER) × 1 ZINC ION × 8 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name F1RKE4_PIG
Isoform —
PDB entities 11
Chains and sequence ranges Author chain K; PDBConstruct 1–117; UniProt 1–117

DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4

OrganismNot specified

UniProt I3LN51

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 13 DNA 2 RNA 1 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 × 1 (I3LJR4) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 × 1 (I3LGP4) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (I3LCH3) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (A0A287ADR4) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 × 1 (I3LSI7) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 × 1 (F1SKN8) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 × 1 (I3LJZ9) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 × 1 (F1RKE4) AMATOXIN × 1 (P85421) DNA (25-MER) × 1 ;RNA (5'-R(P*CP*AP*UP*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3') ; × 1 DNA (36-MER) × 1 ZINC ION × 8 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name I3LN51_PIG
Isoform —
PDB entities 12
Chains and sequence ranges Author chain L; PDBConstruct 1–58; UniProt 1–58

AMATOXIN

OrganismNot specified

UniProt P85421

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 13 DNA 2 RNA 1 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 × 1 (I3LJR4) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 × 1 (I3LGP4) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (I3LCH3) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 × 1 (A0A287ADR4) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 × 1 (I3LSI7) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 × 1 (F1SKN8) DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 × 1 (I3LJZ9) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 × 1 (F1RKE4) DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 × 1 (I3LN51) DNA (25-MER) × 1 ;RNA (5'-R(P*CP*AP*UP*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3') ; × 1 DNA (36-MER) × 1 ZINC ION × 8 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name AAMAT_AMAPH
Isoform —
PDB entities 13
Chains and sequence ranges Author chain M; PDBConstruct 1–8; UniProt 1–8

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6exv
Deposition date deposition_date2017-11-09
Structure title titleStructure of mammalian RNA polymerase II elongation complex inhibited by Alpha-amanitin
Keywords keywordsInhibitor, elongation, active site, TRANSCRIPTION; TRANSCRIPTION
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6exv__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6exv__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6exv__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)51.67 Å
Rg (electron density)51.41 Å
Total Rg51.55 Å
Atom count32717
Residues3976
Excluded volume578540 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6exv__assembly_1__model_1 hexadecameric (16) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (18)

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6. Fold Classification (SCOP + CATH) 16 domains

CATH v4.4 (16 domains)

Domain ID domain_id6exvA01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology274 — Enzyme I; Chain A, domain 2
Homologous superfamily homologous superfamily100 — RNA polymerase Rpb1, domain 3
Domain ID domain_id6exvA02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1360 — Gyrase A; domain 2
Homologous superfamily homologous superfamily140 —
Domain ID domain_id6exvB01
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology1110 — Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3
Homologous superfamily homologous superfamily10 — RNA polymerase Rpb2, domain 2
Domain ID domain_id6exvC01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1360 — Gyrase A; domain 2
Homologous superfamily homologous superfamily10 — RNA polymerase, RBP11-like subunit
Domain ID domain_id6exvC02
Class class2 — Mainly Beta
Architecture architecture170 — Beta Complex
Topology topology120 — RNA Polymerase Alpha Subunit; Chain A, domain 2
Homologous superfamily homologous superfamily12 — DNA-directed RNA polymerase, insert domain
Domain ID domain_id6exvD00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1250 — Growth Hormone; Chain: A;
Homologous superfamily homologous superfamily40 — RNA Polymerase II, Rpb4 subunit
Domain ID domain_id6exvE01
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology1340 — Dna-directed Rna Polymerases I, Ii, And Iii 27 Kd Polypeptide; Chain: A; domain 1
Homologous superfamily homologous superfamily10 — RNA polymerase, Rpb5, N-terminal domain
Domain ID domain_id6exvE02
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology940 — Eukaryotic RPB6 RNA polymerase subunit
Homologous superfamily homologous superfamily20 — RPB5-like RNA polymerase subunit
Domain ID domain_id6exvF00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology940 — Eukaryotic RPB6 RNA polymerase subunit
Homologous superfamily homologous superfamily10 — RNA polymerase subunit, RPB6/omega
Domain ID domain_id6exvG01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1490 — Dna Ligase; domain 1
Homologous superfamily homologous superfamily120 — RNA polymerase Rpb7-like, N-terminal domain
Domain ID domain_id6exvG02
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology50 — OB fold (Dihydrolipoamide Acetyltransferase, E2P)
Homologous superfamily homologous superfamily140 — Nucleic acid-binding proteins
Domain ID domain_id6exvH01
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology50 — OB fold (Dihydrolipoamide Acetyltransferase, E2P)
Homologous superfamily homologous superfamily140 — Nucleic acid-binding proteins
Domain ID domain_id6exvI02
Class class2 — Mainly Beta
Architecture architecture20 — Single Sheet
Topology topology25 — N-terminal domain of TfIIb
Homologous superfamily homologous superfamily10 —
Domain ID domain_id6exvJ00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily60 — Homeodomain-like
Domain ID domain_id6exvK00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1360 — Gyrase A; domain 2
Homologous superfamily homologous superfamily10 — RNA polymerase, RBP11-like subunit
Domain ID domain_id6exvL00
Class class2 — Mainly Beta
Architecture architecture20 — Single Sheet
Topology topology28 — Rubrerythrin, domain 2
Homologous superfamily homologous superfamily30 — RNA polymerase ii, chain L
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7. Citations (1)