9rze

State 2 MAP 3 RNA Pol II activated elongation complex with SETD2 bound to proximal upstream H3

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

RNA polymerase II subunit D

OrganismNot specified

UniProt A0A287ADR4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 31 DNA 2 RNA 1 DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A8D1KNW4) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (A0A8D0JYF1) RNA (92-MER) × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) Template DNA × 1 WD repeat-containing protein 61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (Q4R941) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (Q71DI3) Histone H4 × 2 (P62805) Histone H2A type 1-B/E × 2 (P04908) Histone H2B type 1-K × 2 (O60814) FACT complex subunit SPT16 × 1 (Q9Y5B9) DNA-directed RNA polymerase subunit × 1 (A0A8D1DPV6) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Histone-lysine N-methyltransferase SETD2 × 1 (Q9BYW2) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) ZINC ION × 9 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A287ADR4_PIG
Isoform —
PDB entities 1
Chains and sequence ranges Author chain D; PDBConstruct 1–142; UniProt 43–184

DNA-directed RNA polymerase II subunit E

OrganismNot specified

UniProt I3LSI7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 31 DNA 2 RNA 1 RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A8D1KNW4) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (A0A8D0JYF1) RNA (92-MER) × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) Template DNA × 1 WD repeat-containing protein 61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (Q4R941) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (Q71DI3) Histone H4 × 2 (P62805) Histone H2A type 1-B/E × 2 (P04908) Histone H2B type 1-K × 2 (O60814) FACT complex subunit SPT16 × 1 (Q9Y5B9) DNA-directed RNA polymerase subunit × 1 (A0A8D1DPV6) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Histone-lysine N-methyltransferase SETD2 × 1 (Q9BYW2) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) ZINC ION × 9 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name I3LSI7_PIG
Isoform —
PDB entities 2
Chains and sequence ranges Author chain E; PDBConstruct 1–210; UniProt 1–210

DNA-directed RNA polymerases I, II, and III subunit RPABC2

OrganismNot specified

UniProt A0A8D1KNW4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 31 DNA 2 RNA 1 RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (A0A8D0JYF1) RNA (92-MER) × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) Template DNA × 1 WD repeat-containing protein 61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (Q4R941) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (Q71DI3) Histone H4 × 2 (P62805) Histone H2A type 1-B/E × 2 (P04908) Histone H2B type 1-K × 2 (O60814) FACT complex subunit SPT16 × 1 (Q9Y5B9) DNA-directed RNA polymerase subunit × 1 (A0A8D1DPV6) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Histone-lysine N-methyltransferase SETD2 × 1 (Q9BYW2) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) ZINC ION × 9 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A8D1KNW4_PIG
Isoform —
PDB entities 3
Chains and sequence ranges Author chain F; PDBConstruct 1–127; UniProt 1–127

DNA-directed RNA polymerase II subunit RPB7

OrganismNot specified

UniProt A0A4X1VKG7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 31 DNA 2 RNA 1 RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A8D1KNW4) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (A0A8D0JYF1) RNA (92-MER) × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) Template DNA × 1 WD repeat-containing protein 61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (Q4R941) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (Q71DI3) Histone H4 × 2 (P62805) Histone H2A type 1-B/E × 2 (P04908) Histone H2B type 1-K × 2 (O60814) FACT complex subunit SPT16 × 1 (Q9Y5B9) DNA-directed RNA polymerase subunit × 1 (A0A8D1DPV6) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Histone-lysine N-methyltransferase SETD2 × 1 (Q9BYW2) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) ZINC ION × 9 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A4X1VKG7_PIG
Isoform —
PDB entities 4
Chains and sequence ranges Author chain G; PDBConstruct 1–172; UniProt 1–172

DNA-directed RNA polymerases I, II, and III subunit RPABC3

OrganismNot specified

UniProt I3LCB2

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 31 DNA 2 RNA 1 RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A8D1KNW4) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (A0A8D0JYF1) RNA (92-MER) × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) Template DNA × 1 WD repeat-containing protein 61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (Q4R941) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (Q71DI3) Histone H4 × 2 (P62805) Histone H2A type 1-B/E × 2 (P04908) Histone H2B type 1-K × 2 (O60814) FACT complex subunit SPT16 × 1 (Q9Y5B9) DNA-directed RNA polymerase subunit × 1 (A0A8D1DPV6) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Histone-lysine N-methyltransferase SETD2 × 1 (Q9BYW2) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) ZINC ION × 9 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name I3LCB2_PIG
Isoform —
PDB entities 5
Chains and sequence ranges Author chain H; PDBConstruct 1–150; UniProt 1–150

DNA-directed RNA polymerase II subunit RPB9

OrganismNot specified

UniProt P60899

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 31 DNA 2 RNA 1 RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A8D1KNW4) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (A0A8D0JYF1) RNA (92-MER) × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) Template DNA × 1 WD repeat-containing protein 61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (Q4R941) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (Q71DI3) Histone H4 × 2 (P62805) Histone H2A type 1-B/E × 2 (P04908) Histone H2B type 1-K × 2 (O60814) FACT complex subunit SPT16 × 1 (Q9Y5B9) DNA-directed RNA polymerase subunit × 1 (A0A8D1DPV6) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Histone-lysine N-methyltransferase SETD2 × 1 (Q9BYW2) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) ZINC ION × 9 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPB9_PIG
Isoform —
PDB entities 6
Chains and sequence ranges Author chain I; PDBConstruct 1–125; UniProt 1–125

DNA-directed RNA polymerases I, II, and III subunit RPABC5

OrganismNot specified

UniProt A0A4X1VYD0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 31 DNA 2 RNA 1 RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A8D1KNW4) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (A0A8D0JYF1) RNA (92-MER) × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) Template DNA × 1 WD repeat-containing protein 61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (Q4R941) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (Q71DI3) Histone H4 × 2 (P62805) Histone H2A type 1-B/E × 2 (P04908) Histone H2B type 1-K × 2 (O60814) FACT complex subunit SPT16 × 1 (Q9Y5B9) DNA-directed RNA polymerase subunit × 1 (A0A8D1DPV6) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Histone-lysine N-methyltransferase SETD2 × 1 (Q9BYW2) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) ZINC ION × 9 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A4X1VYD0_PIG
Isoform —
PDB entities 7
Chains and sequence ranges Author chain J; PDBConstruct 1–67; UniProt 1–67

DNA-directed RNA polymerase II subunit RPB11-a

OrganismNot specified

UniProt F1RKE4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 31 DNA 2 RNA 1 RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A8D1KNW4) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) RNA polymerase II subunit K × 1 (A0A8D0JYF1) RNA (92-MER) × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) Template DNA × 1 WD repeat-containing protein 61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (Q4R941) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (Q71DI3) Histone H4 × 2 (P62805) Histone H2A type 1-B/E × 2 (P04908) Histone H2B type 1-K × 2 (O60814) FACT complex subunit SPT16 × 1 (Q9Y5B9) DNA-directed RNA polymerase subunit × 1 (A0A8D1DPV6) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Histone-lysine N-methyltransferase SETD2 × 1 (Q9BYW2) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) ZINC ION × 9 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name F1RKE4_PIG
Isoform —
PDB entities 8
Chains and sequence ranges Author chain K; PDBConstruct 1–117; UniProt 1–117

RNA polymerase II subunit K

OrganismNot specified

UniProt A0A8D0JYF1

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 31 DNA 2 RNA 1 RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A8D1KNW4) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA (92-MER) × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) Template DNA × 1 WD repeat-containing protein 61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (Q4R941) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (Q71DI3) Histone H4 × 2 (P62805) Histone H2A type 1-B/E × 2 (P04908) Histone H2B type 1-K × 2 (O60814) FACT complex subunit SPT16 × 1 (Q9Y5B9) DNA-directed RNA polymerase subunit × 1 (A0A8D1DPV6) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Histone-lysine N-methyltransferase SETD2 × 1 (Q9BYW2) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) ZINC ION × 9 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A8D0JYF1_PIG
Isoform —
PDB entities 9
Chains and sequence ranges Author chain L; PDBConstruct 1–58; UniProt 1–58

RNA polymerase-associated protein CTR9 homolog

Homo sapiens

UniProt Q6PD62

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 31 DNA 2 RNA 1 RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A8D1KNW4) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (A0A8D0JYF1) RNA (92-MER) × 1 Template DNA × 1 WD repeat-containing protein 61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (Q4R941) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (Q71DI3) Histone H4 × 2 (P62805) Histone H2A type 1-B/E × 2 (P04908) Histone H2B type 1-K × 2 (O60814) FACT complex subunit SPT16 × 1 (Q9Y5B9) DNA-directed RNA polymerase subunit × 1 (A0A8D1DPV6) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Histone-lysine N-methyltransferase SETD2 × 1 (Q9BYW2) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) ZINC ION × 9 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CTR9_HUMAN
Isoform —
PDB entities 11
Chains and sequence ranges Author chain Q; PDBConstruct 1–1173; UniProt 1–1173

WD repeat-containing protein 61

Homo sapiens

UniProt Q9GZS3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 31 DNA 2 RNA 1 RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A8D1KNW4) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (A0A8D0JYF1) RNA (92-MER) × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) Template DNA × 1 Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (Q4R941) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (Q71DI3) Histone H4 × 2 (P62805) Histone H2A type 1-B/E × 2 (P04908) Histone H2B type 1-K × 2 (O60814) FACT complex subunit SPT16 × 1 (Q9Y5B9) DNA-directed RNA polymerase subunit × 1 (A0A8D1DPV6) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Histone-lysine N-methyltransferase SETD2 × 1 (Q9BYW2) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) ZINC ION × 9 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name WDR61_HUMAN
Isoform —
PDB entities 13
Chains and sequence ranges Author chain W; PDBConstruct 1–305; UniProt 1–305

Parafibromin

Homo sapiens

UniProt Q6P1J9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 31 DNA 2 RNA 1 RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A8D1KNW4) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (A0A8D0JYF1) RNA (92-MER) × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) Template DNA × 1 WD repeat-containing protein 61 × 1 (Q9GZS3) Transcription elongation factor SPT4 × 1 (Q4R941) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (Q71DI3) Histone H4 × 2 (P62805) Histone H2A type 1-B/E × 2 (P04908) Histone H2B type 1-K × 2 (O60814) FACT complex subunit SPT16 × 1 (Q9Y5B9) DNA-directed RNA polymerase subunit × 1 (A0A8D1DPV6) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Histone-lysine N-methyltransferase SETD2 × 1 (Q9BYW2) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) ZINC ION × 9 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CDC73_HUMAN
Isoform —
PDB entities 14
Chains and sequence ranges Author chain X; PDBConstruct 1–531; UniProt 1–531

Transcription elongation factor SPT4

Homo sapiens

UniProt Q4R941

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 31 DNA 2 RNA 1 RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A8D1KNW4) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (A0A8D0JYF1) RNA (92-MER) × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) Template DNA × 1 WD repeat-containing protein 61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (Q71DI3) Histone H4 × 2 (P62805) Histone H2A type 1-B/E × 2 (P04908) Histone H2B type 1-K × 2 (O60814) FACT complex subunit SPT16 × 1 (Q9Y5B9) DNA-directed RNA polymerase subunit × 1 (A0A8D1DPV6) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Histone-lysine N-methyltransferase SETD2 × 1 (Q9BYW2) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) ZINC ION × 9 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SPT4H_MACFA
Isoform —
PDB entities 15
Chains and sequence ranges Author chain Y; PDBConstruct 5–121; UniProt 1–117

Transcription elongation factor SPT5

Homo sapiens

UniProt O00267

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 31 DNA 2 RNA 1 RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A8D1KNW4) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (A0A8D0JYF1) RNA (92-MER) × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) Template DNA × 1 WD repeat-containing protein 61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (Q4R941) Histone H3.2 × 2 (Q71DI3) Histone H4 × 2 (P62805) Histone H2A type 1-B/E × 2 (P04908) Histone H2B type 1-K × 2 (O60814) FACT complex subunit SPT16 × 1 (Q9Y5B9) DNA-directed RNA polymerase subunit × 1 (A0A8D1DPV6) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Histone-lysine N-methyltransferase SETD2 × 1 (Q9BYW2) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) ZINC ION × 9 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SPT5H_HUMAN
Isoform —
PDB entities 16
Chains and sequence ranges Author chain Z; PDBConstruct 1–1087; UniProt 1–1087

Histone H3.2

Homo sapiens

UniProt Q71DI3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 31 DNA 2 RNA 1 RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A8D1KNW4) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (A0A8D0JYF1) RNA (92-MER) × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) Template DNA × 1 WD repeat-containing protein 61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (Q4R941) Transcription elongation factor SPT5 × 1 (O00267) Histone H4 × 2 (P62805) Histone H2A type 1-B/E × 2 (P04908) Histone H2B type 1-K × 2 (O60814) FACT complex subunit SPT16 × 1 (Q9Y5B9) DNA-directed RNA polymerase subunit × 1 (A0A8D1DPV6) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Histone-lysine N-methyltransferase SETD2 × 1 (Q9BYW2) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) ZINC ION × 9 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name H32_HUMAN
Isoform —
PDB entities 17
Chains and sequence ranges Author chain a; PDBConstruct 1–136; UniProt 1–136 Author chain e; PDBConstruct 1–136; UniProt 1–136

Histone H4

Homo sapiens

UniProt P62805

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 31 DNA 2 RNA 1 RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A8D1KNW4) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (A0A8D0JYF1) RNA (92-MER) × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) Template DNA × 1 WD repeat-containing protein 61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (Q4R941) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (Q71DI3) Histone H2A type 1-B/E × 2 (P04908) Histone H2B type 1-K × 2 (O60814) FACT complex subunit SPT16 × 1 (Q9Y5B9) DNA-directed RNA polymerase subunit × 1 (A0A8D1DPV6) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Histone-lysine N-methyltransferase SETD2 × 1 (Q9BYW2) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) ZINC ION × 9 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name H4_HUMAN
Isoform —
PDB entities 18
Chains and sequence ranges Author chain b; PDBConstruct 1–103; UniProt 1–103 Author chain f; PDBConstruct 1–103; UniProt 1–103

Histone H2A type 1-B/E

Homo sapiens

UniProt P04908

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 31 DNA 2 RNA 1 RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A8D1KNW4) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (A0A8D0JYF1) RNA (92-MER) × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) Template DNA × 1 WD repeat-containing protein 61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (Q4R941) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (Q71DI3) Histone H4 × 2 (P62805) Histone H2B type 1-K × 2 (O60814) FACT complex subunit SPT16 × 1 (Q9Y5B9) DNA-directed RNA polymerase subunit × 1 (A0A8D1DPV6) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Histone-lysine N-methyltransferase SETD2 × 1 (Q9BYW2) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) ZINC ION × 9 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name H2A1B_HUMAN
Isoform —
PDB entities 19
Chains and sequence ranges Author chain c; PDBConstruct 6–135; UniProt 1–130 Author chain g; PDBConstruct 6–135; UniProt 1–130

Histone H2B type 1-K

Homo sapiens

UniProt O60814

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 31 DNA 2 RNA 1 RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A8D1KNW4) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (A0A8D0JYF1) RNA (92-MER) × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) Template DNA × 1 WD repeat-containing protein 61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (Q4R941) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (Q71DI3) Histone H4 × 2 (P62805) Histone H2A type 1-B/E × 2 (P04908) FACT complex subunit SPT16 × 1 (Q9Y5B9) DNA-directed RNA polymerase subunit × 1 (A0A8D1DPV6) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Histone-lysine N-methyltransferase SETD2 × 1 (Q9BYW2) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) ZINC ION × 9 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name H2B1K_HUMAN
Isoform —
PDB entities 20
Chains and sequence ranges Author chain d; PDBConstruct 1–126; UniProt 1–126 Author chain h; PDBConstruct 1–126; UniProt 1–126

FACT complex subunit SPT16

Homo sapiens

UniProt Q9Y5B9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 31 DNA 2 RNA 1 RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A8D1KNW4) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (A0A8D0JYF1) RNA (92-MER) × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) Template DNA × 1 WD repeat-containing protein 61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (Q4R941) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (Q71DI3) Histone H4 × 2 (P62805) Histone H2A type 1-B/E × 2 (P04908) Histone H2B type 1-K × 2 (O60814) DNA-directed RNA polymerase subunit × 1 (A0A8D1DPV6) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Histone-lysine N-methyltransferase SETD2 × 1 (Q9BYW2) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) ZINC ION × 9 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SP16H_HUMAN
Isoform —
PDB entities 21
Chains and sequence ranges Author chain j; PDBConstruct 3–1049; UniProt 1–1047

DNA-directed RNA polymerase subunit

OrganismNot specified

UniProt A0A8D1DPV6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 31 DNA 2 RNA 1 RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A8D1KNW4) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (A0A8D0JYF1) RNA (92-MER) × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) Template DNA × 1 WD repeat-containing protein 61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (Q4R941) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (Q71DI3) Histone H4 × 2 (P62805) Histone H2A type 1-B/E × 2 (P04908) Histone H2B type 1-K × 2 (O60814) FACT complex subunit SPT16 × 1 (Q9Y5B9) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Histone-lysine N-methyltransferase SETD2 × 1 (Q9BYW2) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) ZINC ION × 9 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A8D1DPV6_PIG
Isoform —
PDB entities 22
Chains and sequence ranges Author chain A; PDBConstruct 1–1970; UniProt 1–1970

DNA-directed RNA polymerase subunit beta

OrganismNot specified

UniProt I3LGP4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 31 DNA 2 RNA 1 RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A8D1KNW4) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (A0A8D0JYF1) RNA (92-MER) × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) Template DNA × 1 WD repeat-containing protein 61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (Q4R941) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (Q71DI3) Histone H4 × 2 (P62805) Histone H2A type 1-B/E × 2 (P04908) Histone H2B type 1-K × 2 (O60814) FACT complex subunit SPT16 × 1 (Q9Y5B9) DNA-directed RNA polymerase subunit × 1 (A0A8D1DPV6) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Histone-lysine N-methyltransferase SETD2 × 1 (Q9BYW2) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) ZINC ION × 9 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name I3LGP4_PIG
Isoform —
PDB entities 23
Chains and sequence ranges Author chain B; PDBConstruct 1–1174; UniProt 78–1251

DNA-directed RNA polymerase II subunit RPB3

OrganismNot specified

UniProt I3LCH3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 31 DNA 2 RNA 1 RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A8D1KNW4) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (A0A8D0JYF1) RNA (92-MER) × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) Template DNA × 1 WD repeat-containing protein 61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (Q4R941) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (Q71DI3) Histone H4 × 2 (P62805) Histone H2A type 1-B/E × 2 (P04908) Histone H2B type 1-K × 2 (O60814) FACT complex subunit SPT16 × 1 (Q9Y5B9) DNA-directed RNA polymerase subunit × 1 (A0A8D1DPV6) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Histone-lysine N-methyltransferase SETD2 × 1 (Q9BYW2) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) ZINC ION × 9 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name I3LCH3_PIG
Isoform —
PDB entities 24
Chains and sequence ranges Author chain C; PDBConstruct 1–275; UniProt 1–275

Transcription elongation factor SPT6

Homo sapiens

UniProt Q7KZ85

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 31 DNA 2 RNA 1 RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A8D1KNW4) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (A0A8D0JYF1) RNA (92-MER) × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) Template DNA × 1 WD repeat-containing protein 61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (Q4R941) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (Q71DI3) Histone H4 × 2 (P62805) Histone H2A type 1-B/E × 2 (P04908) Histone H2B type 1-K × 2 (O60814) FACT complex subunit SPT16 × 1 (Q9Y5B9) DNA-directed RNA polymerase subunit × 1 (A0A8D1DPV6) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) Non-template DNA × 1 Histone-lysine N-methyltransferase SETD2 × 1 (Q9BYW2) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) ZINC ION × 9 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SPT6H_HUMAN
Isoform —
PDB entities 25
Chains and sequence ranges Author chain M; PDBConstruct 4–1729; UniProt 1–1726

Histone-lysine N-methyltransferase SETD2

Homo sapiens

UniProt Q9BYW2

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 31 DNA 2 RNA 1 RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A8D1KNW4) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (A0A8D0JYF1) RNA (92-MER) × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) Template DNA × 1 WD repeat-containing protein 61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (Q4R941) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (Q71DI3) Histone H4 × 2 (P62805) Histone H2A type 1-B/E × 2 (P04908) Histone H2B type 1-K × 2 (O60814) FACT complex subunit SPT16 × 1 (Q9Y5B9) DNA-directed RNA polymerase subunit × 1 (A0A8D1DPV6) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) ZINC ION × 9 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SETD2_HUMAN
Isoform —
PDB entities 27
Chains and sequence ranges Author chain O; PDBConstruct 4–1133; UniProt 1435–2564

RNA polymerase-associated protein RTF1 homolog

Homo sapiens

UniProt Q92541

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 31 DNA 2 RNA 1 RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A8D1KNW4) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (A0A8D0JYF1) RNA (92-MER) × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) Template DNA × 1 WD repeat-containing protein 61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (Q4R941) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (Q71DI3) Histone H4 × 2 (P62805) Histone H2A type 1-B/E × 2 (P04908) Histone H2B type 1-K × 2 (O60814) FACT complex subunit SPT16 × 1 (Q9Y5B9) DNA-directed RNA polymerase subunit × 1 (A0A8D1DPV6) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Histone-lysine N-methyltransferase SETD2 × 1 (Q9BYW2) RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) ZINC ION × 9 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RTF1_HUMAN
Isoform —
PDB entities 28
Chains and sequence ranges Author chain R; PDBConstruct 4–713; UniProt 1–710

RNA polymerase-associated protein LEO1

Homo sapiens

UniProt Q8WVC0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 31 DNA 2 RNA 1 RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A8D1KNW4) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (A0A8D0JYF1) RNA (92-MER) × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) Template DNA × 1 WD repeat-containing protein 61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (Q4R941) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (Q71DI3) Histone H4 × 2 (P62805) Histone H2A type 1-B/E × 2 (P04908) Histone H2B type 1-K × 2 (O60814) FACT complex subunit SPT16 × 1 (Q9Y5B9) DNA-directed RNA polymerase subunit × 1 (A0A8D1DPV6) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Histone-lysine N-methyltransferase SETD2 × 1 (Q9BYW2) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) RNA polymerase II-associated factor 1 homolog × 1 (Q8N7H5) ZINC ION × 9 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name LEO1_HUMAN
Isoform —
PDB entities 29
Chains and sequence ranges Author chain U; PDBConstruct 1–666; UniProt 1–666

RNA polymerase II-associated factor 1 homolog

Homo sapiens

UniProt Q8N7H5

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 31 DNA 2 RNA 1 RNA polymerase II subunit D × 1 (A0A287ADR4) DNA-directed RNA polymerase II subunit E × 1 (I3LSI7) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A8D1KNW4) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (I3LCB2) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A4X1VYD0) DNA-directed RNA polymerase II subunit RPB11-a × 1 (F1RKE4) RNA polymerase II subunit K × 1 (A0A8D0JYF1) RNA (92-MER) × 1 RNA polymerase-associated protein CTR9 homolog × 1 (Q6PD62) Template DNA × 1 WD repeat-containing protein 61 × 1 (Q9GZS3) Parafibromin × 1 (Q6P1J9) Transcription elongation factor SPT4 × 1 (Q4R941) Transcription elongation factor SPT5 × 1 (O00267) Histone H3.2 × 2 (Q71DI3) Histone H4 × 2 (P62805) Histone H2A type 1-B/E × 2 (P04908) Histone H2B type 1-K × 2 (O60814) FACT complex subunit SPT16 × 1 (Q9Y5B9) DNA-directed RNA polymerase subunit × 1 (A0A8D1DPV6) DNA-directed RNA polymerase subunit beta × 1 (I3LGP4) DNA-directed RNA polymerase II subunit RPB3 × 1 (I3LCH3) Transcription elongation factor SPT6 × 1 (Q7KZ85) Non-template DNA × 1 Histone-lysine N-methyltransferase SETD2 × 1 (Q9BYW2) RNA polymerase-associated protein RTF1 homolog × 1 (Q92541) RNA polymerase-associated protein LEO1 × 1 (Q8WVC0) ZINC ION × 9 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PAF1_HUMAN
Isoform —
PDB entities 30
Chains and sequence ranges Author chain V; PDBConstruct 1–531; UniProt 1–531

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id9rze
Deposition date deposition_date2025-07-15
Structure title titleState 2 MAP 3 RNA Pol II activated elongation complex with SETD2 bound to proximal upstream H3
Keywords keywordsRNA Pol II Activated elongation complex Co-transcriptional H3K36me3 SETD2, TRANSCRIPTION; TRANSCRIPTION
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9rze__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9rze__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9rze__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)92.83 Å
Rg (electron density)91.45 Å
Total Rg91.64 Å
Atom count72793
Residues8551
Excluded volume1269900 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9rze__assembly_1__model_1 34-meric (34) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (32)

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7. Citations (1)