9bz0

Structure of an STK19-containing TC-NER complex

Method: ELECTRON MICROSCOPY
▼

1. Protein Identity and Related Structures Protein Identity & Related Structures

DNA-directed RNA polymerase subunit

OrganismNot specified

UniProt A0A7M4DUC2

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A7M4DUC2_PIG
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–1984; UniProt 1–1984

DNA-directed RNA polymerase subunit beta

Sus scrofa

UniProt A0A4X1TVZ5

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A4X1TVZ5_PIG
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–1251; UniProt 1–1251

DNA-directed RNA polymerase II subunit RPB3

OrganismNot specified

UniProt A0A481DF93

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A481DF93_PIG
Isoform —
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–275; UniProt 46–320

RNA polymerase Rpb4/RPC9 core domain-containing protein

OrganismNot specified

UniProt A0A8D0KES4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A8D0KES4_PIG
Isoform —
PDB entities 4
Chains and sequence ranges Author chain D; PDBConstruct 1–142; UniProt 43–184

DNA-directed RNA polymerase II subunit E

OrganismNot specified

UniProt A0A4X1VTX4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A4X1VTX4_PIG
Isoform —
PDB entities 5
Chains and sequence ranges Author chain E; PDBConstruct 1–210; UniProt 1–210

DNA-directed RNA polymerases I, II, and III subunit RPABC2

OrganismNot specified

UniProt A0A4X1VEK9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A4X1VEK9_PIG
Isoform —
PDB entities 6
Chains and sequence ranges Author chain F; PDBConstruct 1–127; UniProt 1–127

DNA-directed RNA polymerase II subunit RPB7

OrganismNot specified

UniProt A0A4X1VKG7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A4X1VKG7_PIG
Isoform —
PDB entities 7
Chains and sequence ranges Author chain G; PDBConstruct 1–172; UniProt 1–172

DNA-directed RNA polymerases I, II, and III subunit RPABC3

OrganismNot specified

UniProt A0A8D1AQR7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A8D1AQR7_PIG
Isoform —
PDB entities 8
Chains and sequence ranges Author chain H; PDBConstruct 1–150; UniProt 1–150

DNA-directed RNA polymerase II subunit RPB9

OrganismNot specified

UniProt P60899

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPB9_PIG
Isoform —
PDB entities 9
Chains and sequence ranges Author chain I; PDBConstruct 1–125; UniProt 1–125

DNA-directed RNA polymerases I, II, and III subunit RPABC5

OrganismNot specified

UniProt A0A8W4F9W9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A8W4F9W9_PIG
Isoform —
PDB entities 10
Chains and sequence ranges Author chain J; PDBConstruct 1–67; UniProt 1–67

RNA polymerase II subunit J

OrganismNot specified

UniProt A0A8D0TE17

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A8D0TE17_PIG
Isoform —
PDB entities 11
Chains and sequence ranges Author chain K; PDBConstruct 1–117; UniProt 1–117

RNA polymerase II subunit K

OrganismNot specified

UniProt A0A4X1TRS6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A4X1TRS6_PIG
Isoform —
PDB entities 12
Chains and sequence ranges Author chain L; PDBConstruct 1–58; UniProt 1–58

Transcription elongation factor 1 homolog

Homo sapiens

UniProt A0A2K5RSX0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A2K5RSX0_CEBIM
Isoform —
PDB entities 13
Chains and sequence ranges Author chain M; PDBConstruct 4–85; UniProt 7–88

DNA excision repair protein ERCC-8

Homo sapiens

UniProt Q13216

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ERCC8_HUMAN
Isoform —
PDB entities 17
Chains and sequence ranges Author chain a; PDBConstruct 1–396; UniProt 1–396

DNA excision repair protein ERCC-6

Homo sapiens

UniProt Q03468

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ERCC6_HUMAN
Isoform —
PDB entities 18
Chains and sequence ranges Author chain b; PDBConstruct 4–1496; UniProt 1–1493

UV-stimulated scaffold protein A

Homo sapiens

UniProt Q2YD98

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name UVSSA_HUMAN
Isoform —
PDB entities 19
Chains and sequence ranges Author chain c; PDBConstruct 4–712; UniProt 1–709

DNA damage-binding protein 1

Homo sapiens

UniProt Q16531

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name DDB1_HUMAN
Isoform —
PDB entities 20
Chains and sequence ranges Author chain d; PDBConstruct 4–1143; UniProt 1–1140

DET1- and DDB1-associated protein 1

Homo sapiens

UniProt Q9BW61

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) Inactive serine/threonine-protein kinase 19 × 1 (P49842) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name DDA1_HUMAN
Isoform —
PDB entities 21
Chains and sequence ranges Author chain e; PDBConstruct 4–105; UniProt 1–102

Inactive serine/threonine-protein kinase 19

Homo sapiens

UniProt P49842

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 19 DNA 2 RNA 1 DNA-directed RNA polymerase subunit × 1 (A0A7M4DUC2) DNA-directed RNA polymerase subunit beta × 1 (A0A4X1TVZ5) DNA-directed RNA polymerase II subunit RPB3 × 1 (A0A481DF93) RNA polymerase Rpb4/RPC9 core domain-containing protein × 1 (A0A8D0KES4) DNA-directed RNA polymerase II subunit E × 1 (A0A4X1VTX4) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (A0A4X1VEK9) DNA-directed RNA polymerase II subunit RPB7 × 1 (A0A4X1VKG7) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (A0A8D1AQR7) DNA-directed RNA polymerase II subunit RPB9 × 1 (P60899) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (A0A8W4F9W9) RNA polymerase II subunit J × 1 (A0A8D0TE17) RNA polymerase II subunit K × 1 (A0A4X1TRS6) Transcription elongation factor 1 homolog × 1 (A0A2K5RSX0) DNA (35-MER) × 1 ;RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') ; × 1 DNA (49-MER) × 1 DNA excision repair protein ERCC-8 × 1 (Q13216) DNA excision repair protein ERCC-6 × 1 (Q03468) UV-stimulated scaffold protein A × 1 (Q2YD98) DNA damage-binding protein 1 × 1 (Q16531) DET1- and DDB1-associated protein 1 × 1 (Q9BW61) ZINC ION × 10 MAGNESIUM ION × 2 water × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name STK19_HUMAN
Isoform —
PDB entities 22
Chains and sequence ranges Author chain f; PDBConstruct 1–254; UniProt 1–254

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

▼

2. Structure Basics 2. Structure Basics

Entry ID entry_id9bz0
Deposition date deposition_date2024-05-24
Structure title titleStructure of an STK19-containing TC-NER complex
Keywords keywordsDNA repair, RNA polymerase II, Co-transcriptional process, TRANSCRIPTION, TRANSCRIPTION-DNA-RNA complex; TRANSCRIPTION/DNA/RNA
Experimental Method methodELECTRON MICROSCOPY
▼

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9bz0__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9bz0__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9bz0__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)68.77 Å
Rg (electron density)69.54 Å
Total Rg69.38 Å
Atom count54685
Residues6730
Excluded volume967880 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9bz0__assembly_1__model_1 22-meric (22) Success 4.1.3-1-20251215 (887e7ef) View Download
▶

4. Crystallography and Experiment 4. Crystallography & Experiment

▶

5. Entities and Polymers Entities & Polymers (25)

▶

7. Citations (1)