|
3J9M
Structure of the human mitochondrial ribosome (class 1)
提交 2015-02-08
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 81
PDB 声明:85-meric
|
链 A0
1–218(218 aa)
|
未记录
|
MG MAGNESIUM ION × 127
ZN ZINC ION × 7
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
20 mM HEPES-KOH, pH 7.45, 100 mM KCl, 20 mM MgOAc, 2 mM DTT;pH 7.45;20 mM HEPES-KOH, pH 7.45, 100 mM KCl, 20 mM MgOAc, 2 mM DTT
cryo-EM玻璃化条件
Blot 2.5 seconds before plunging;90 K;冷冻剂 ETHANE;Blot 2.5 seconds before plunging into liquid ethane (FEI VITROBOT MARK II).
|
分辨率 3.50 Å
|
|
6NU2
Structural insights into unique features of the human mitochondrial ribosome recycling
提交 2019-01-30
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 82
PDB 声明:86-meric
|
链 A0
6–213(208 aa)
|
未记录
|
MG MAGNESIUM ION × 127
ZN ZINC ION × 7
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.6
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.90 Å
|
|
6RW4
Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF3
提交 2019-06-03
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 31
PDB 声明:32-meric
|
链 0
1–218(218 aa)
|
未记录
|
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
SPM SPERMINE × 1
SRY STREPTOMYCIN × 1
MG MAGNESIUM ION × 60
K POTASSIUM ION × 17
ZN ZINC ION × 1
FES FE2/S2 (INORGANIC) CLUSTER × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 2.97 Å
|
|
6RW5
Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF2 and IF3
提交 2019-06-03
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 32
PDB 声明:33-meric
|
链 0
1–218(218 aa)
|
未记录
|
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
SPM SPERMINE × 1
SRY STREPTOMYCIN × 1
MG MAGNESIUM ION × 61
K POTASSIUM ION × 17
ZN ZINC ION × 1
FES FE2/S2 (INORGANIC) CLUSTER × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 2
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.14 Å
|
|
6VLZ
Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)
提交 2020-01-27
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
其他组合
异源复合物;蛋白 × 85
PDB 声明:90-meric
|
链 A0
1–218(218 aa)
|
未记录
|
MG MAGNESIUM ION × 130
ZN ZINC ION × 7
GDP GUANOSINE-5'-DIPHOSPHATE × 1
GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 2.97 Å
|
|
6VMI
Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)
提交 2020-01-28
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
其他组合
异源复合物;蛋白 × 85
PDB 声明:91-meric
|
链 A0
1–218(218 aa)
|
未记录
|
MG MAGNESIUM ION × 130
ZN ZINC ION × 7
GDP GUANOSINE-5'-DIPHOSPHATE × 1
GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 2.96 Å
|
|
6ZM5
Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide
提交 2020-07-01
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 88
PDB 声明:94-meric
|
链 A0
1–218(218 aa)
|
未记录
|
MG MAGNESIUM ION × 189
K POTASSIUM ION × 44
ZN ZINC ION × 3
FES FE2/S2 (INORGANIC) CLUSTER × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
ALA ALANINE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 2.89 Å
|
|
6ZM6
Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA
提交 2020-07-01
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 86
PDB 声明:92-meric
|
链 A0
1–218(218 aa)
|
未记录
|
MG MAGNESIUM ION × 189
K POTASSIUM ION × 44
ZN ZINC ION × 3
FES FE2/S2 (INORGANIC) CLUSTER × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 2.59 Å
|
|
6ZS9
Human mitochondrial ribosome in complex with ribosome recycling factor
提交 2020-07-15
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 88
PDB 声明:91-meric
|
链 A0
1–218(218 aa)
|
未记录
|
ZN ZINC ION × 7
MG MAGNESIUM ION × 195
DOL 5-(2-DIETHYLAMINO-ETHANESULFONYL)-21-HYDROXY-10-ISOPROPYL-11,19-DIMETHYL-9,26-DIOXA-3,15,28-TRIAZA-TRICYCLO[23.2.1.00,255]OCTACOSA-1(27),12,17,19,25(28)-PENTAENE-2,8,14,23-TETRAONE × 1
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 4.00 Å
|
|
6ZSA
Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNA
提交 2020-07-15
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 86
PDB 声明:92-meric
|
链 A0
1–218(218 aa)
|
未记录
|
ZN ZINC ION × 7
MG MAGNESIUM ION × 195
H8Q ~{N}-[(3~{S},6~{R},12~{R},15~{S},16~{S},19~{S},22~{S},25~{S})-25-[[(3~{S})-1-azabicyclo[2.2.2]octan-3-yl]sulfanylmethyl]-3-[[4-(dimethylamino)phenyl]methyl]-12-ethyl-4,16-dimethyl-2,5,11,14,18,21,24-heptakis(oxidanylidene)-19-phenyl-17-oxa-1,4,10,13,20-pentazatricyclo[20.4.0.0^{6,10}]hexacosan-15-yl]-3-oxidanyl-pyridine-2-carboxamide × 1
DOL 5-(2-DIETHYLAMINO-ETHANESULFONYL)-21-HYDROXY-10-ISOPROPYL-11,19-DIMETHYL-9,26-DIOXA-3,15,28-TRIAZA-TRICYCLO[23.2.1.00,255]OCTACOSA-1(27),12,17,19,25(28)-PENTAENE-2,8,14,23-TETRAONE × 1
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 4.00 Å
|
|
6ZSB
Human mitochondrial ribosome in complex with mRNA and P-site tRNA
提交 2020-07-15
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 87
PDB 声明:92-meric
|
链 A0
1–218(218 aa)
|
未记录
|
ZN ZINC ION × 7
MG MAGNESIUM ION × 195
DOL 5-(2-DIETHYLAMINO-ETHANESULFONYL)-21-HYDROXY-10-ISOPROPYL-11,19-DIMETHYL-9,26-DIOXA-3,15,28-TRIAZA-TRICYCLO[23.2.1.00,255]OCTACOSA-1(27),12,17,19,25(28)-PENTAENE-2,8,14,23-TETRAONE × 1
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 4.50 Å
|
|
6ZSC
Human mitochondrial ribosome in complex with E-site tRNA
提交 2020-07-15
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 87
PDB 声明:91-meric
|
链 A0
1–218(218 aa)
|
未记录
|
ZN ZINC ION × 7
MG MAGNESIUM ION × 195
DOL 5-(2-DIETHYLAMINO-ETHANESULFONYL)-21-HYDROXY-10-ISOPROPYL-11,19-DIMETHYL-9,26-DIOXA-3,15,28-TRIAZA-TRICYCLO[23.2.1.00,255]OCTACOSA-1(27),12,17,19,25(28)-PENTAENE-2,8,14,23-TETRAONE × 1
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.50 Å
|
|
6ZSD
Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA
提交 2020-07-15
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 87
PDB 声明:93-meric
|
链 A0
1–218(218 aa)
|
未记录
|
ZN ZINC ION × 7
MG MAGNESIUM ION × 195
DOL 5-(2-DIETHYLAMINO-ETHANESULFONYL)-21-HYDROXY-10-ISOPROPYL-11,19-DIMETHYL-9,26-DIOXA-3,15,28-TRIAZA-TRICYCLO[23.2.1.00,255]OCTACOSA-1(27),12,17,19,25(28)-PENTAENE-2,8,14,23-TETRAONE × 1
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.70 Å
|
|
6ZSE
Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA
提交 2020-07-15
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 87
PDB 声明:93-meric
|
链 A0
1–218(218 aa)
|
未记录
|
ZN ZINC ION × 7
MG MAGNESIUM ION × 195
DOL 5-(2-DIETHYLAMINO-ETHANESULFONYL)-21-HYDROXY-10-ISOPROPYL-11,19-DIMETHYL-9,26-DIOXA-3,15,28-TRIAZA-TRICYCLO[23.2.1.00,255]OCTACOSA-1(27),12,17,19,25(28)-PENTAENE-2,8,14,23-TETRAONE × 1
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 5.00 Å
|
|
6ZSG
Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA
提交 2020-07-15
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 87
PDB 声明:94-meric
|
链 A0
1–218(218 aa)
|
未记录
|
ZN ZINC ION × 7
MG MAGNESIUM ION × 195
DOL 5-(2-DIETHYLAMINO-ETHANESULFONYL)-21-HYDROXY-10-ISOPROPYL-11,19-DIMETHYL-9,26-DIOXA-3,15,28-TRIAZA-TRICYCLO[23.2.1.00,255]OCTACOSA-1(27),12,17,19,25(28)-PENTAENE-2,8,14,23-TETRAONE × 1
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 4.00 Å
|
|
7A5F
Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs
提交 2020-08-21
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 85
PDB 声明:91-meric
|
链 a6
1–218(218 aa)
|
未记录
|
MG MAGNESIUM ION × 128
ZN ZINC ION × 7
GDP GUANOSINE-5'-DIPHOSPHATE × 1
SO4 SULFATE ION × 1
MLI MALONATE ION × 3
CL CHLORIDE ION × 2
NA SODIUM ION × 4
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 4.40 Å
|
|
7A5G
Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNA
提交 2020-08-21
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 86
PDB 声明:94-meric
|
链 a6
1–218(218 aa)
|
未记录
|
MG MAGNESIUM ION × 128
SPD SPERMIDINE × 1
ZN ZINC ION × 7
GDP GUANOSINE-5'-DIPHOSPHATE × 1
GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1
NA SODIUM ION × 4
SO4 SULFATE ION × 1
MLI MALONATE ION × 3
CL CHLORIDE ION × 2
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 4.33 Å
|
|
7A5I
Structure of the human mitoribosome with A- P-and E-site mt-tRNAs
提交 2020-08-21
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 83
PDB 声明:90-meric
|
链 a6
1–218(218 aa)
|
未记录
|
MG MAGNESIUM ION × 127
ZN ZINC ION × 7
CL CHLORIDE ION × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.70 Å
|
|
7A5K
Structure of the human mitoribosome in the post translocation state bound to mtEF-G1
提交 2020-08-21
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 86
PDB 声明:93-meric
|
链 a6
1–218(218 aa)
|
未记录
|
GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1
MG MAGNESIUM ION × 128
SPD SPERMIDINE × 1
ZN ZINC ION × 7
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.70 Å
|
|
7L08
Cryo-EM structure of the human 55S mitoribosome-RRFmt complex.
提交 2020-12-11
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 84
PDB 声明:87-meric
|
链 A0
1–218(218 aa)
|
未记录
|
MG MAGNESIUM ION × 127
ZN ZINC ION × 7
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.49 Å
|
|
7OG4
Human mitochondrial ribosome in complex with P/E-tRNA
提交 2021-05-06
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 86
PDB 声明:90-meric
|
链 A0
1–218(218 aa)
|
未记录
|
ZN ZINC ION × 7
MG MAGNESIUM ION × 195
H8Q ~{N}-[(3~{S},6~{R},12~{R},15~{S},16~{S},19~{S},22~{S},25~{S})-25-[[(3~{S})-1-azabicyclo[2.2.2]octan-3-yl]sulfanylmethyl]-3-[[4-(dimethylamino)phenyl]methyl]-12-ethyl-4,16-dimethyl-2,5,11,14,18,21,24-heptakis(oxidanylidene)-19-phenyl-17-oxa-1,4,10,13,20-pentazatricyclo[20.4.0.0^{6,10}]hexacosan-15-yl]-3-oxidanyl-pyridine-2-carboxamide × 1
DOL 5-(2-DIETHYLAMINO-ETHANESULFONYL)-21-HYDROXY-10-ISOPROPYL-11,19-DIMETHYL-9,26-DIOXA-3,15,28-TRIAZA-TRICYCLO[23.2.1.00,255]OCTACOSA-1(27),12,17,19,25(28)-PENTAENE-2,8,14,23-TETRAONE × 1
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.80 Å
|
|
7P2E
Human mitochondrial ribosome small subunit in complex with IF3, GMPPMP and streptomycin
提交 2021-07-05
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 31
PDB 声明:32-meric
|
链 0
1–218(218 aa)
|
未记录
|
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
SPM SPERMINE × 1
5I0 [(2~{S},3~{S},4~{S},5~{R},6~{S})-2-[(2~{R},3~{R},4~{R},5~{S})-2-[(1~{R},2~{S},3~{R},4~{R},5~{S},6~{R})-2,4-bis[[azaniumylidene(azanyl)methyl]amino]-3,5,6-tris(oxidanyl)cyclohexyl]oxy-4-[bis(oxidanyl)methyl]-5-methyl-4-oxidanyl-oxolan-3-yl]oxy-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-yl]-methyl-azanium × 1
K POTASSIUM ION × 21
MG MAGNESIUM ION × 62
ZN ZINC ION × 1
FES FE2/S2 (INORGANIC) CLUSTER × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 2.40 Å
|
|
7PNX
Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation a
提交 2021-09-08
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 31
PDB 声明:32-meric
|
链 0
1–218(218 aa)
|
未记录
|
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
MG MAGNESIUM ION × 64
K POTASSIUM ION × 16
ZN ZINC ION × 1
FES FE2/S2 (INORGANIC) CLUSTER × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
SAH S-ADENOSYL-L-HOMOCYSTEINE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 2.76 Å
|
|
7PNY
Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation b
提交 2021-09-08
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 31
PDB 声明:32-meric
|
链 0
1–218(218 aa)
|
未记录
|
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
MG MAGNESIUM ION × 61
K POTASSIUM ION × 20
ZN ZINC ION × 1
FES FE2/S2 (INORGANIC) CLUSTER × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
SAH S-ADENOSYL-L-HOMOCYSTEINE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.06 Å
|
|
7PNZ
Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation c
提交 2021-09-08
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 31
PDB 声明:32-meric
|
链 0
1–218(218 aa)
|
未记录
|
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
MG MAGNESIUM ION × 61
K POTASSIUM ION × 17
ZN ZINC ION × 1
FES FE2/S2 (INORGANIC) CLUSTER × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
SAH S-ADENOSYL-L-HOMOCYSTEINE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.09 Å
|
|
7PO0
Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and IF3
提交 2021-09-08
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 31
PDB 声明:32-meric
|
链 0
1–218(218 aa)
|
未记录
|
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
MG MAGNESIUM ION × 65
K POTASSIUM ION × 17
ZN ZINC ION × 1
FES FE2/S2 (INORGANIC) CLUSTER × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 2.90 Å
|
|
7PO1
Initiation complex of human mitochondrial ribosome small subunit with IF3
提交 2021-09-08
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 31
PDB 声明:32-meric
|
链 0
1–218(218 aa)
|
未记录
|
MG MAGNESIUM ION × 71
K POTASSIUM ION × 20
ZN ZINC ION × 1
FES FE2/S2 (INORGANIC) CLUSTER × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 2.92 Å
|
|
7PO2
Initiation complex of human mitochondrial ribosome small subunit with IF2, fMet-tRNAMet and mRNA
提交 2021-09-08
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 32
PDB 声明:35-meric
|
链 0
1–218(218 aa)
|
未记录
|
MG MAGNESIUM ION × 72
K POTASSIUM ION × 20
ZN ZINC ION × 1
FES FE2/S2 (INORGANIC) CLUSTER × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
FME N-FORMYLMETHIONINE × 1
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.09 Å
|
|
7PO3
Human mitochondrial ribosome small subunit
提交 2021-09-08
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 30
PDB 声明:31-meric
|
链 0
1–218(218 aa)
|
未记录
|
MG MAGNESIUM ION × 64
K POTASSIUM ION × 21
ZN ZINC ION × 1
FES FE2/S2 (INORGANIC) CLUSTER × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 2.92 Å
|
|
7QI4
Human mitochondrial ribosome at 2.2 A resolution (bound to partly built tRNAs and mRNA)
提交 2021-12-14
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 87
PDB 声明:94-meric
|
链 A0
2–218(217 aa)
|
未记录
|
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
SPM SPERMINE × 1
SPD SPERMIDINE × 4
MG MAGNESIUM ION × 206
K POTASSIUM ION × 54
ZN ZINC ION × 3
FES FE2/S2 (INORGANIC) CLUSTER × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
PUT 1,4-DIAMINOBUTANE × 1
VAL VALINE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 2.21 Å
|
|
7QI5
Human mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolution
提交 2021-12-14
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 87
PDB 声明:94-meric
|
链 A0
2–218(217 aa)
|
未记录
|
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
SPM SPERMINE × 1
SPD SPERMIDINE × 4
MG MAGNESIUM ION × 208
K POTASSIUM ION × 54
ZN ZINC ION × 3
FES FE2/S2 (INORGANIC) CLUSTER × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
PUT 1,4-DIAMINOBUTANE × 1
VAL VALINE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 2.63 Å
|
|
7QI6
Human mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolution
提交 2021-12-14
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 87
PDB 声明:93-meric
|
链 A0
2–218(217 aa)
|
未记录
|
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
SPM SPERMINE × 1
SPD SPERMIDINE × 4
K POTASSIUM ION × 54
MG MAGNESIUM ION × 202
ZN ZINC ION × 3
FES FE2/S2 (INORGANIC) CLUSTER × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
PUT 1,4-DIAMINOBUTANE × 1
VAL VALINE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 2.98 Å
|
|
8ANY
Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNA
提交 2022-08-06
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 89
PDB 声明:96-meric
|
链 A0
2–218(217 aa)
|
未记录
|
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
SPM SPERMINE × 1
SPD SPERMIDINE × 4
MG MAGNESIUM ION × 206
K POTASSIUM ION × 49
ZN ZINC ION × 3
FES FE2/S2 (INORGANIC) CLUSTER × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
PUT 1,4-DIAMINOBUTANE × 1
VAL VALINE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 2.85 Å
|
|
8CSP
Human mitochondrial small subunit assembly intermediate (State A)
提交 2022-05-13
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 32
PDB 声明:33-meric
|
链 0
1–218(218 aa)
|
未记录
|
SF4 IRON/SULFUR CLUSTER × 1
SAM S-ADENOSYLMETHIONINE × 1
K POTASSIUM ION × 4
MG MAGNESIUM ION × 28
FES FE2/S2 (INORGANIC) CLUSTER × 2
ZN ZINC ION × 1
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 2.66 Å
|
|
8CSQ
Human mitochondrial small subunit assembly intermediate (State B)
提交 2022-05-13
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 32
PDB 声明:33-meric
|
链 0
1–218(218 aa)
|
未记录
|
SF4 IRON/SULFUR CLUSTER × 1
SAM S-ADENOSYLMETHIONINE × 1
K POTASSIUM ION × 4
MG MAGNESIUM ION × 27
ZN ZINC ION × 1
FES FE2/S2 (INORGANIC) CLUSTER × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 2.54 Å
|
|
8CSR
Human mitochondrial small subunit assembly intermediate (State C)
提交 2022-05-13
|
构建体不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 33
PDB 声明:34-meric
|
链 0
1–218(218 aa)
|
未记录
|
SF4 IRON/SULFUR CLUSTER × 1
SAM S-ADENOSYLMETHIONINE × 1
K POTASSIUM ION × 5
MG MAGNESIUM ION × 31
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
ZN ZINC ION × 1
FES FE2/S2 (INORGANIC) CLUSTER × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 2.54 Å
|
|
8CSS
Human mitochondrial small subunit assembly intermediate (State D)
提交 2022-05-13
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 32
PDB 声明:33-meric
|
链 0
1–218(218 aa)
|
未记录
|
SF4 IRON/SULFUR CLUSTER × 1
SAM S-ADENOSYLMETHIONINE × 1
K POTASSIUM ION × 7
MG MAGNESIUM ION × 32
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
ZN ZINC ION × 1
FES FE2/S2 (INORGANIC) CLUSTER × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 2.36 Å
|
|
8CST
Human mitochondrial small subunit assembly intermediate (State E)
提交 2022-05-13
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 31
PDB 声明:32-meric
|
链 0
1–218(218 aa)
|
未记录
|
SF4 IRON/SULFUR CLUSTER × 1
SAM S-ADENOSYLMETHIONINE × 1
K POTASSIUM ION × 4
MG MAGNESIUM ION × 30
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
ZN ZINC ION × 1
FES FE2/S2 (INORGANIC) CLUSTER × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 2.85 Å
|
|
8CSU
Human mitochondrial small subunit assembly intermediate (State C*)
提交 2022-05-13
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 32
PDB 声明:33-meric
|
链 0
1–218(218 aa)
|
未记录
|
SF4 IRON/SULFUR CLUSTER × 1
SAM S-ADENOSYLMETHIONINE × 1
K POTASSIUM ION × 5
MG MAGNESIUM ION × 26
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
ZN ZINC ION × 1
FES FE2/S2 (INORGANIC) CLUSTER × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.03 Å
|
|
8K2A
Cryo-EM structure of the human 55S mitoribosome with Tigecycline
提交 2023-07-12
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 80
PDB 声明:83-meric
|
链 Sj
1–218(218 aa)
|
未记录
|
MG MAGNESIUM ION × 145
T1C TIGECYCLINE × 4
ZN ZINC ION × 7
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 2.90 Å
|
|
8OIR
55S human mitochondrial ribosome with mtRF1 and P-site tRNA
提交 2023-03-23
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 88
PDB 声明:94-meric
|
链 Aj
1–218(218 aa)
|
未记录
|
K POTASSIUM ION × 51
MG MAGNESIUM ION × 354
VAL VALINE × 1
ZN ZINC ION × 3
FS2 FE-S-O HYBRID CLUSTER × 3
MET METHIONINE × 1
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE-PROPANE
|
分辨率 3.10 Å
|
|
8OIS
28S human mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA
提交 2023-03-23
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 33
PDB 声明:36-meric
|
链 Aj
1–218(218 aa)
|
未记录
|
K POTASSIUM ION × 17
MG MAGNESIUM ION × 126
MET METHIONINE × 1
ZN ZINC ION × 1
FS2 FE-S-O HYBRID CLUSTER × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE-PROPANE
|
分辨率 3.00 Å
|
|
8QRK
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 1
提交 2023-10-09
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 29
PDB 声明:30-meric
|
链 0
1–218(218 aa)
|
未记录
|
MG MAGNESIUM ION × 49
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
SPM SPERMINE × 1
SRY STREPTOMYCIN × 1
K POTASSIUM ION × 17
ZN ZINC ION × 1
FES FE2/S2 (INORGANIC) CLUSTER × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 6.69 Å
|
|
8QRL
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2
提交 2023-10-09
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 30
PDB 声明:31-meric
|
链 0
1–218(218 aa)
|
未记录
|
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
MG MAGNESIUM ION × 64
K POTASSIUM ION × 16
ZN ZINC ION × 1
FES FE2/S2 (INORGANIC) CLUSTER × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
SAH S-ADENOSYL-L-HOMOCYSTEINE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.34 Å
|
|
8QRM
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 3
提交 2023-10-09
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 31
PDB 声明:32-meric
|
链 0
1–218(218 aa)
|
未记录
|
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
SPM SPERMINE × 1
SRY STREPTOMYCIN × 1
MG MAGNESIUM ION × 59
K POTASSIUM ION × 17
ZN ZINC ION × 1
FES FE2/S2 (INORGANIC) CLUSTER × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.05 Å
|
|
8QRN
mt-SSU in GTPBP8 knock-out cells, state 4
提交 2023-10-09
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 31
PDB 声明:34-meric
|
链 0
1–218(218 aa)
|
未记录
|
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
SPM SPERMINE × 1
SRY STREPTOMYCIN × 1
MG MAGNESIUM ION × 58
K POTASSIUM ION × 18
ZN ZINC ION × 1
FES FE2/S2 (INORGANIC) CLUSTER × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1
FME N-FORMYLMETHIONINE × 1
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 2.98 Å
|
|
8RRI
Human mitochondrial ribosome in complex with antibiotic tigecycline
提交 2024-01-22
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 80
PDB 声明:86-meric
|
链 A0
2–218(217 aa)
|
未记录
|
VAL VALINE × 1
MG MAGNESIUM ION × 94
FES FE2/S2 (INORGANIC) CLUSTER × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
T1C TIGECYCLINE × 3
K POTASSIUM ION × 16
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 2.40 Å
|
|
8XT0
Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline
提交 2024-01-10
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 80
PDB 声明:83-meric
|
链 Sj
1–218(218 aa)
|
未记录
|
MG MAGNESIUM ION × 145
T1C TIGECYCLINE × 3
ZN ZINC ION × 7
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.20 Å
|
|
8XT2
Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline
提交 2024-01-10
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 80
PDB 声明:83-meric
|
链 Sj
1–218(218 aa)
|
未记录
|
MG MAGNESIUM ION × 145
T1C TIGECYCLINE × 3
ZN ZINC ION × 7
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.30 Å
|
|
9G5B
Assembly intermediate of human mitochondrial ribosome small subunit (State A)
提交 2024-07-16
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 31
PDB 声明:32-meric
|
链 0
1–218(218 aa)
|
未记录
|
MG MAGNESIUM ION × 12
ZN ZINC ION × 1
FES FE2/S2 (INORGANIC) CLUSTER × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4;20mM HEPES-HCl, 100mM KCl, 20mM MgCl2, 0.02% DDM, 1mM PMSF, 1x protease-inhibitor mix, 0.5mM GMP-PNP
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.20 Å
|
|
9G5C
Assembly intermediate of human mitochondrial ribosome small subunit (State B)
提交 2024-07-16
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 31
PDB 声明:32-meric
|
链 0
1–218(218 aa)
|
未记录
|
MG MAGNESIUM ION × 23
K POTASSIUM ION × 4
ZN ZINC ION × 1
FES FE2/S2 (INORGANIC) CLUSTER × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
SAH S-ADENOSYL-L-HOMOCYSTEINE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4;20mM HEPES-HCl, 100mM KCl, 20mM MgCl2, 0.02% DDM, 1mM PMSF, 1x protease-inhibitor mix, 0.5mM GMP-PNP
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.00 Å
|
|
9G5D
Assembly intermediate of human mitochondrial ribosome small subunit (State C)
提交 2024-07-16
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 31
PDB 声明:32-meric
|
链 0
1–218(218 aa)
|
未记录
|
MG MAGNESIUM ION × 10
K POTASSIUM ION × 1
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
ZN ZINC ION × 1
FES FE2/S2 (INORGANIC) CLUSTER × 2
GDP GUANOSINE-5'-DIPHOSPHATE × 1
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
SAH S-ADENOSYL-L-HOMOCYSTEINE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4;20mM HEPES-HCl, 100mM KCl, 20mM MgCl2, 0.02% DDM, 1mM PMSF, 1x protease-inhibitor mix, 0.5mM GMP-PNP
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.00 Å
|
|
9G5E
Translation-initiation state of human mitochondrial ribosome small subunit (State F)
提交 2024-07-16
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 31
PDB 声明:32-meric
|
链 0
1–218(218 aa)
|
未记录
|
MG MAGNESIUM ION × 45
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
K POTASSIUM ION × 1
ZN ZINC ION × 1
FES FE2/S2 (INORGANIC) CLUSTER × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4;20mM HEPES-HCl, 100mM KCl, 20mM MgCl2, 0.02% DDM, 1mM PMSF, 1x protease-inhibitor mix, 0.5mM GMP-PNP
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.20 Å
|
|
9H54
Assembly intermediate of human mitochondrial ribosome small subunit in complex with NOA1 and partial RBFA (state N2)
提交 2024-10-22
|
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 30
PDB 声明:31-meric
|
链 0
4–218(215 aa)
|
未记录
|
MG MAGNESIUM ION × 42
K POTASSIUM ION × 11
ZN ZINC ION × 1
FES FE2/S2 (INORGANIC) CLUSTER × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 2
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.00 Å
|
|
9H55
Assembly intermediate of human mitochondrial ribosome small subunit in complex with NOA1 and TFB1M (state N3)
提交 2024-10-22
|
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 31
PDB 声明:32-meric
|
链 0
4–218(215 aa)
|
未记录
|
MG MAGNESIUM ION × 41
K POTASSIUM ION × 10
ZN ZINC ION × 1
FES FE2/S2 (INORGANIC) CLUSTER × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 2
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.40 Å
|
|
9HFM
Translation-initiation state of human mitochondrial ribosome small subunit (State D)
提交 2024-11-18
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 31
PDB 声明:32-meric
|
链 0
1–218(218 aa)
|
未记录
|
MG MAGNESIUM ION × 44
K POTASSIUM ION × 1
ZN ZINC ION × 1
FES FE2/S2 (INORGANIC) CLUSTER × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4;20mM HEPES-HCl, 100mM KCl, 20mM MgCl2, 0.02% DDM, 1mM PMSF, 1x protease-inhibitor mix, 0.5mM GMP-PNP
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.00 Å
|
|
9HFN
Translation-initiation state of human mitochondrial ribosome small subunit (State E)
提交 2024-11-18
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 32
PDB 声明:33-meric
|
链 0
1–218(218 aa)
|
未记录
|
MG MAGNESIUM ION × 45
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
K POTASSIUM ION × 1
ZN ZINC ION × 1
FES FE2/S2 (INORGANIC) CLUSTER × 2
GDP GUANOSINE-5'-DIPHOSPHATE × 1
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4;20mM HEPES-HCl, 100mM KCl, 20mM MgCl2, 0.02% DDM, 1mM PMSF, 1x protease-inhibitor mix, 0.5mM GMP-PNP
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.30 Å
|
|
9HFO
Translation-initiation state of human mitochondrial ribosome small subunit (State G)
提交 2024-11-18
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 31
PDB 声明:34-meric
|
链 0
1–218(218 aa)
|
未记录
|
MG MAGNESIUM ION × 45
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
K POTASSIUM ION × 1
ZN ZINC ION × 1
FES FE2/S2 (INORGANIC) CLUSTER × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4;20mM HEPES-HCl, 100mM KCl, 20mM MgCl2, 0.02% DDM, 1mM PMSF, 1x protease-inhibitor mix, 0.5mM GMP-PNP
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.10 Å
|
|
9IGT
Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15, RBFA, and mtIF2 (State M2.1)
提交 2025-02-20
|
构建体不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 33
PDB 声明:34-meric
|
链 0
1–218(218 aa)
|
未记录
|
MG MAGNESIUM ION × 12
ZN ZINC ION × 1
FES FE2/S2 (INORGANIC) CLUSTER × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 2
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
SPM SPERMINE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 5.96 Å
|
|
9IGU
Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15 and RBFA (Inward conformation) (State M2)
提交 2025-02-20
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 31
PDB 声明:32-meric
|
链 0
1–218(218 aa)
|
未记录
|
MG MAGNESIUM ION × 31
FES FE2/S2 (INORGANIC) CLUSTER × 2
ZN ZINC ION × 1
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
SPM SPERMINE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.64 Å
|
|
9OJM
Human mitochondrial 28S PIC with tRNA and mtIF2
提交 2025-05-08
|
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 31
PDB 声明:34-meric
|
链 0
4–218(215 aa)
|
未记录
|
MG MAGNESIUM ION × 72
K POTASSIUM ION × 20
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
ZN ZINC ION × 1
FES FE2/S2 (INORGANIC) CLUSTER × 2
GDP GUANOSINE-5'-DIPHOSPHATE × 1
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 2.50 Å
|
|
9OLF
Membrane-associated human mitoribosome in complex with TACO1
提交 2025-05-12
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 93
PDB 声明:100-meric
|
链 A0
2–218(217 aa)
|
未记录
|
ZN ZINC ION × 3
SPD SPERMIDINE × 7
MG MAGNESIUM ION × 205
PUT 1,4-DIAMINOBUTANE × 1
K POTASSIUM ION × 54
SPM SPERMINE × 2
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
FES FE2/S2 (INORGANIC) CLUSTER × 3
GDP GUANOSINE-5'-DIPHOSPHATE × 1
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
VAL VALINE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 2.46 Å
|
|
9PG8
In situ structure of the human mitoribosome in the P-E state
提交 2025-07-07
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 86
PDB 声明:93-meric
|
链 A0
2–218(217 aa)
|
未记录
|
ZN ZINC ION × 3
K POTASSIUM ION × 54
SPD SPERMIDINE × 8
PUT 1,4-DIAMINOBUTANE × 1
MG MAGNESIUM ION × 205
VAL VALINE × 1
FES FE2/S2 (INORGANIC) CLUSTER × 3
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
SPM SPERMINE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.06 Å
|
|
9PGF
In situ structure of the human mitoribosome in the P state
提交 2025-07-07
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 86
PDB 声明:91-meric
|
链 A0
2–218(217 aa)
|
未记录
|
ZN ZINC ION × 3
K POTASSIUM ION × 54
SPD SPERMIDINE × 8
PUT 1,4-DIAMINOBUTANE × 1
MG MAGNESIUM ION × 205
VAL VALINE × 1
FES FE2/S2 (INORGANIC) CLUSTER × 3
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
SPM SPERMINE × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 2.93 Å
|
|
9PGI
In situ structure of the human mitoribosome in the A-P-E state with TACO1
提交 2025-07-07
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 87
PDB 声明:94-meric
|
链 A0
2–218(217 aa)
|
未记录
|
ZN ZINC ION × 3
K POTASSIUM ION × 54
SPD SPERMIDINE × 7
PUT 1,4-DIAMINOBUTANE × 1
MG MAGNESIUM ION × 204
FES FE2/S2 (INORGANIC) CLUSTER × 3
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
SPM SPERMINE × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
VAL VALINE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.02 Å
|
|
9PGL
In situ structure of the human mitoribosome in the A-P state with TACO1
提交 2025-07-08
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 86
PDB 声明:92-meric
|
链 A0
2–218(217 aa)
|
未记录
|
ZN ZINC ION × 3
K POTASSIUM ION × 54
SPD SPERMIDINE × 8
PUT 1,4-DIAMINOBUTANE × 1
MG MAGNESIUM ION × 204
FES FE2/S2 (INORGANIC) CLUSTER × 3
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
SPM SPERMINE × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
VAL VALINE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 2.90 Å
|
|
9PGM
In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells
提交 2025-07-08
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 85
PDB 声明:91-meric
|
链 A0
2–218(217 aa)
|
未记录
|
ZN ZINC ION × 3
K POTASSIUM ION × 54
SPD SPERMIDINE × 7
PUT 1,4-DIAMINOBUTANE × 1
MG MAGNESIUM ION × 204
FES FE2/S2 (INORGANIC) CLUSTER × 3
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
SPM SPERMINE × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
VAL VALINE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.18 Å
|
|
9PRD
In situ structure of the human mitoribosome in the P state from TACO1-knockout cells
提交 2025-07-23
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 84
PDB 声明:89-meric
|
链 A0
2–218(217 aa)
|
未记录
|
ZN ZINC ION × 3
K POTASSIUM ION × 54
SPD SPERMIDINE × 7
PUT 1,4-DIAMINOBUTANE × 1
MG MAGNESIUM ION × 204
FES FE2/S2 (INORGANIC) CLUSTER × 3
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
SPM SPERMINE × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
VAL VALINE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.31 Å
|
|
9PRQ
In situ structure of human mitoribosome in the A/T-P state from TACO1-knockout cells
提交 2025-07-24
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 85
PDB 声明:91-meric
|
链 A0
2–218(217 aa)
|
未记录
|
ZN ZINC ION × 3
K POTASSIUM ION × 54
SPD SPERMIDINE × 7
PUT 1,4-DIAMINOBUTANE × 1
MG MAGNESIUM ION × 204
FES FE2/S2 (INORGANIC) CLUSTER × 3
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
SPM SPERMINE × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
VAL VALINE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.34 Å
|
|
9PRX
In situ structure of the human mitoribosome in the A-P state from TACO1-knockout cells
提交 2025-07-24
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 84
PDB 声明:90-meric
|
链 A0
2–218(217 aa)
|
未记录
|
VAL VALINE × 1
ZN ZINC ION × 3
K POTASSIUM ION × 54
SPD SPERMIDINE × 7
PUT 1,4-DIAMINOBUTANE × 1
MG MAGNESIUM ION × 204
FES FE2/S2 (INORGANIC) CLUSTER × 3
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
SPM SPERMINE × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.23 Å
|
|
9PS0
In situ structure of the human mitoribosome in the A/P-P/E state from TACO1-knockout cells
提交 2025-07-24
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 85
PDB 声明:91-meric
|
链 A0
2–218(217 aa)
|
未记录
|
ZN ZINC ION × 3
K POTASSIUM ION × 52
SPD SPERMIDINE × 7
PUT 1,4-DIAMINOBUTANE × 1
MG MAGNESIUM ION × 204
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
SPM SPERMINE × 2
FES FE2/S2 (INORGANIC) CLUSTER × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
VAL VALINE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.29 Å
|
|
9PS7
In situ structure of the human mitoribosome in the A/T-P-E state from TACO1-knockout cells
提交 2025-07-25
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 86
PDB 声明:93-meric
|
链 A0
2–218(217 aa)
|
未记录
|
ZN ZINC ION × 3
K POTASSIUM ION × 54
SPD SPERMIDINE × 7
PUT 1,4-DIAMINOBUTANE × 1
MG MAGNESIUM ION × 204
FES FE2/S2 (INORGANIC) CLUSTER × 3
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
SPM SPERMINE × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
VAL VALINE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.08 Å
|
|
9PSI
In situ structure of the human mitoribosome in the A-P-E state from TACO1-knockout cells
提交 2025-07-25
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 85
PDB 声明:92-meric
|
链 A0
2–218(217 aa)
|
未记录
|
ZN ZINC ION × 3
K POTASSIUM ION × 54
SPD SPERMIDINE × 7
PUT 1,4-DIAMINOBUTANE × 1
MG MAGNESIUM ION × 204
FES FE2/S2 (INORGANIC) CLUSTER × 3
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
SPM SPERMINE × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
VAL VALINE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.12 Å
|
|
9PSM
In situ structure of the human mitoribosome in the A/P-P/E state
提交 2025-07-25
|
构建体不同
聚集状态不同
配体/离子不同
实验环境不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 87
PDB 声明:93-meric
|
链 A0
2–218(217 aa)
|
未记录
|
ZN ZINC ION × 3
K POTASSIUM ION × 54
SPD SPERMIDINE × 8
PUT 1,4-DIAMINOBUTANE × 1
MG MAGNESIUM ION × 204
FES FE2/S2 (INORGANIC) CLUSTER × 3
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
SPM SPERMINE × 2
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
VAL VALINE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 2.98 Å
|
|
9UWH
human mitoribosome trapped by retapamulin
提交 2025-05-12
|
构建体不同
聚集状态不同
配体/离子不同
结构质量不同
|
Assembly 1
蛋白–RNA
异源复合物;蛋白 × 81
PDB 声明:86-meric
|
链 A0
2–218(217 aa)
|
未记录
|
MG MAGNESIUM ION × 208
K POTASSIUM ION × 53
G34 Retapamulin × 1
VAL VALINE × 1
NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 1
SPD SPERMIDINE × 1
ZN ZINC ION × 3
FES FE2/S2 (INORGANIC) CLUSTER × 3
ATP ADENOSINE-5'-TRIPHOSPHATE × 1
GDP GUANOSINE-5'-DIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.5
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 3.00 Å
|