SAXSdb — 9rt2

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1. Structure Basics

entry_id	9rt2
deposition_date	2025-07-01
title	NetF - ANTXR2 structure (C4)
keywords	NetF, clostridium perfringens, hemolysin, CMG2, ANTXR2, toxin receptor interaction, transmembrane beta-barrel, TOXIN; TOXIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	49.93 Å
rg_electron	49.77 Å
i0	1882030000.00
molecular_weight	365170.0 kDa
excluded_volume	458310 Å³
envelope_volume	641460 Å³
shell_volume	106430 Å³
envelope_diameter	160.7 Å
shell_rg	55.60 Å
envelope_rg	47.87 Å
shape_rg	49.74 Å
total_rg	50.07 Å
total_atoms	51141
n_residues	3279
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	151.0 Å
rg_real	49.74 Å
rg_real_error	0.90 Å
i0_real	1.8820e+09
i0_real_error	3.0110e+07
rg_reciprocal	50.07 Å
i0_reciprocal	1883000000.0000
total_estimate	0.8796
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	66.0 Å
skewness	0.134
kurtosis	-0.390
angular_range	— – 0.1600 Å⁻¹
current_alpha	0.0000
highest_alpha	143200000.0000
n_real_points	33
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.945; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.965; Smooth: 0.632

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

Entity 1 polymer

description	Leukocidin/Hemolysin toxin family
formula_weight	32874.6 kDa
src_method	man
entity_count	8

Polymer

type	polypeptide(L)
strand_id	N1,N2,N3,N4,N5,N6,N7,N8
atom_count	51141

MVHHHHHHNSFPESIINSKGKQAEVYTSSDASERDGIKTSLSASFIEDPNSNNLTALVSLKGFIPSGLIKTGTYYSANMYWPSKYNINIETTDEKNNVKILESIPSNTIETVRVTESMGYSIGGNVSVSKKSSSVGANAGFNVQRSVQYEQPDFKTIQKSDGIRKASWNIVFNKTKDGYDQNSYHALYGNQLFMKSRLHNTGAKNLVEDKDLSPLISGGFTPNMVIALKAPKGTKKSMINLNYNLYQDLYTLEWYKTQWWGENRVAKEPYYTYQTYELDWENHTVEFIY

Source

organism	Clostridium perfringens
ncbi_taxonomy_id	1502
host_organism	Escherichia coli

Entity 2 polymer

description	Anthrax toxin receptor 2
formula_weight	34978.7 kDa
mutation	deleted TM and cytoplasmic domains
src_method	man
entity_count	4

Polymer

type	polypeptide(L)
strand_id	C1,C2,C3,C4

QEQPSCRRAFDLYFVLDKSGSVANNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQSCTEILELQPSSVCVGEEFQIVLSGRGFMLGSRNGSVLCTYTVNETYTTSVKPVSVQLNSMLCPAPILNKAGETLDVSVSFNGGKSVISGSLIVTATECSNGRTENLYFQGGAGARSIEGRIVKDYKDDDDKHHHHHH

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Homo sapiens

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	triclinic

resolution	2.60 Å
resolution_method	—
num_particles	67074

fit	/app/data/saxs_computation/rt/9rt2/9rt2.fit
pddf	/app/data/pr_computation/rt/9rt2/9rt2.pr.out
profile	/app/data/saxs_computation/rt/9rt2/9rt2.dat

NetF - ANTXR2 structure (C4)

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

EM 3D

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)