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9rt4

NetF - ANTXR2 local refinement focused

Method: ELECTRON MICROSCOPY D_max: 79.5 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9rt4
deposition_date	2025-07-02
title	NetF - ANTXR2 local refinement focused
keywords	NetF, clostridium perfringens, hemolysin, CMG2, ANTXR2, toxin receptor interaction, transmembrane beta-barrel, TOXIN; TOXIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	23.75 Å
rg_electron	23.08 Å
i0	29839300.00
molecular_weight	42803.0 kDa
excluded_volume	53956 Å³
envelope_volume	65090 Å³
shell_volume	24140 Å³
envelope_diameter	82.9 Å
shell_rg	29.41 Å
envelope_rg	23.43 Å
shape_rg	23.10 Å
total_rg	23.82 Å
total_atoms	5992
n_residues	387
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	79.5 Å
rg_real	23.81 Å
rg_real_error	0.50 Å
i0_real	2.9840e+07
i0_real_error	4.1820e+05
rg_reciprocal	23.80 Å
i0_reciprocal	29840000.0000
total_estimate	0.8014
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	27.3 Å
skewness	0.453
kurtosis	-0.164
angular_range	— – 0.3350 Å⁻¹
current_alpha	0.0000
highest_alpha	6134000.0000
n_real_points	65
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.817; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.966; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

Entity 1 polymer

description	Anthrax toxin receptor 2
formula_weight	38765.1 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	C1
atom_count	5992

MGTLSAPPCTQRIKWKGLLLTASLLNFWNLPTTAGQEQPSCRRAFDLYFVLDKSGSVANNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQSCTEILELQPSSVCVGEEFQIVLSGRGFMLGSRNGSVLCTYTVNETYTTSVKPVSVQLNSMLCPAPILNKAGETLDVSVSFNGGKSVISGSLIVTATECSNGRTENLYFQGGAGARSIEGRIVKDYKDDDDKHHHHHH

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Homo sapiens

Entity 2 polymer

description	Leukocidin/Hemolysin toxin family
formula_weight	32874.6 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	N2

MVHHHHHHNSFPESIINSKGKQAEVYTSSDASERDGIKTSLSASFIEDPNSNNLTALVSLKGFIPSGLIKTGTYYSANMYWPSKYNINIETTDEKNNVKILESIPSNTIETVRVTESMGYSIGGNVSVSKKSSSVGANAGFNVQRSVQYEQPDFKTIQKSDGIRKASWNIVFNKTKDGYDQNSYHALYGNQLFMKSRLHNTGAKNLVEDKDLSPLISGGFTPNMVIALKAPKGTKKSMINLNYNLYQDLYTLEWYKTQWWGENRVAKEPYYTYQTYELDWENHTVEFIY

Source

organism	Clostridium perfringens
ncbi_taxonomy_id	1502
host_organism	Escherichia coli

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	triclinic

resolution	2.60 Å
resolution_method	—
num_particles	268296

fit	/app/data/saxs_computation/rt/9rt4/9rt4.fit
pddf	/app/data/pr_computation/rt/9rt4/9rt4.pr.out
profile	/app/data/saxs_computation/rt/9rt4/9rt4.dat

NetF - ANTXR2 local refinement focused

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

EM 3D

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)