|
6JO5
Structure of the green algal photosystem I supercomplex with light-harvesting complex I
Deposited 2019-03-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 21
PDB declaration: 21-meric
|
Chain J
1–41(41 aa)
|
Not recorded
|
CL0 CHLOROPHYLL A ISOMER × 1
CLA CHLOROPHYLL A × 218
PQN PHYLLOQUINONE × 2
LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 12
BCR BETA-CAROTENE × 32
SF4 IRON/SULFUR CLUSTER × 3
DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 1
LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 2
CHL CHLOROPHYLL B × 20
LUT (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 22
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.90 Å
|
|
6JO6
Structure of the green algal photosystem I supercomplex with light-harvesting complex I
Deposited 2019-03-20
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 19
PDB declaration: nonadecameric
|
Chain J
1–41(41 aa)
|
Not recorded
|
CL0 CHLOROPHYLL A ISOMER × 1
CLA CHLOROPHYLL A × 197
PQN PHYLLOQUINONE × 2
LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 12
BCR BETA-CAROTENE × 32
SF4 IRON/SULFUR CLUSTER × 3
DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 1
LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 1
CHL CHLOROPHYLL B × 18
LUT (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 18
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.90 Å
|
|
7BGI
Photosystem I of a temperature sensitive mutant Chlamydomonas reinhardtii
Deposited 2021-01-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 21
PDB declaration: 21-meric
|
Chain J
1–39(39 aa)
|
Not recorded
|
CL0 CHLOROPHYLL A ISOMER × 1
CLA CHLOROPHYLL A × 217
PQN PHYLLOQUINONE × 2
SF4 IRON/SULFUR CLUSTER × 3
BCR BETA-CAROTENE × 31
LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 16
NKP (2R)-2-hydroxy-3-(phosphonooxy)propyl (9E)-octadec-9-enoate × 3
LMT DODECYL-BETA-D-MALTOSIDE × 8
OCA OCTANOIC ACID (CAPRYLIC ACID) × 1
DAO LAURIC ACID × 1
LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 2
DGA DIACYL GLYCEROL × 2
DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 1
CA CALCIUM ION × 1
T7X Phosphatidylinositol × 1
RRX (3R)-beta,beta-caroten-3-ol × 1
C7Z (1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol × 3
SPH SPHINGOSINE × 3
LUT (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 22
CHL CHLOROPHYLL B × 25
SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 2
QTB (3~{E},5~{E},7~{E})-6-methyl-8-[(6~{R})-2,2,6-trimethylcyclohexyl]octa-3,5,7-trien-2-one × 1
3PH 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE × 5
PLM PALMITIC ACID × 1
LPX (2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.54 Å
|
|
7BLX
Photosystem I of a temperature sensitive mutant Chlamydomonas reinhardtii
Deposited 2021-01-19
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 19
PDB declaration: nonadecameric
|
Chain J
1–39(39 aa)
|
Not recorded
|
CL0 CHLOROPHYLL A ISOMER × 1
CLA CHLOROPHYLL A × 197
PQN PHYLLOQUINONE × 2
SF4 IRON/SULFUR CLUSTER × 3
BCR BETA-CAROTENE × 31
LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 14
NKP (2R)-2-hydroxy-3-(phosphonooxy)propyl (9E)-octadec-9-enoate × 3
LMT DODECYL-BETA-D-MALTOSIDE × 7
OCA OCTANOIC ACID (CAPRYLIC ACID) × 1
DAO LAURIC ACID × 1
LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 2
DGA DIACYL GLYCEROL × 1
DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 1
CA CALCIUM ION × 1
RRX (3R)-beta,beta-caroten-3-ol × 1
C7Z (1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol × 3
SPH SPHINGOSINE × 3
LUT (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 17
CHL CHLOROPHYLL B × 20
SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 1
QTB (3~{E},5~{E},7~{E})-6-methyl-8-[(6~{R})-2,2,6-trimethylcyclohexyl]octa-3,5,7-trien-2-one × 1
3PH 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE × 4
PLM PALMITIC ACID × 1
LPX (2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.15 Å
|
|
7D0J
Photosystem I-LHCI-LHCII of Chlamydomonas reinhardtii
Deposited 2020-09-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 29
PDB declaration: 29-meric
|
Chain J
1–41(41 aa)
|
Not recorded
|
CLA CHLOROPHYLL A × 276
PQN PHYLLOQUINONE × 2
LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 20
BCR BETA-CAROTENE × 37
SF4 IRON/SULFUR CLUSTER × 3
DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2
SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 1
LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 10
CHL CHLOROPHYLL B × 56
LUT (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 34
XAT (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 6
NEX (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL × 6
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.42 Å
|
|
7DZ7
State transition supercomplex PSI-LHCI-LHCII from double phosphatase mutant pph1;pbcp of green alga Chlamydomonas reinhardtii
Deposited 2021-01-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 29
PDB declaration: 29-meric
|
Chain J
1–41(41 aa)
|
Not recorded
|
CLA CHLOROPHYLL A × 298
PQN PHYLLOQUINONE × 2
LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 27
BCR BETA-CAROTENE × 40
SF4 IRON/SULFUR CLUSTER × 3
LMU DODECYL-ALPHA-D-MALTOSIDE × 7
LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 11
DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 1
LUT (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 22
XAT (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 16
NEX (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL × 8
CHL CHLOROPHYLL B × 36
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.84 Å
|
|
7DZ8
State transition supercomplex PSI-LHCI-LHCII from the LhcbM1 lacking mutant of Chlamydomonas reinhardtii
Deposited 2021-01-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 29
PDB declaration: 29-meric
|
Chain J
1–41(41 aa)
|
Not recorded
|
CLA CHLOROPHYLL A × 298
PQN PHYLLOQUINONE × 2
LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 27
BCR BETA-CAROTENE × 40
SF4 IRON/SULFUR CLUSTER × 3
LMU DODECYL-ALPHA-D-MALTOSIDE × 7
LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 11
DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 1
LUT (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 22
XAT (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 16
NEX (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL × 8
CHL CHLOROPHYLL B × 36
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.16 Å
|
|
7O01
Dimeric Photosystem I of a temperature sensitive mutant Chlamydomonas reinhardtii
Deposited 2021-03-25
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 40
PDB declaration: 40-meric
|
Chain J
1–39(39 aa)
Chain j
1–39(39 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 17.10 Å
|
|
7R3K
Chlamydomonas reinhardtii TSP9 mutant small Photosystem I complex
Deposited 2022-02-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 18
PDB declaration: octadecameric
|
Chain J
1–41(41 aa)
|
Not recorded
|
CL0 CHLOROPHYLL A ISOMER × 1
CLA CHLOROPHYLL A × 186
PQN PHYLLOQUINONE × 2
SF4 IRON/SULFUR CLUSTER × 3
BCR BETA-CAROTENE × 28
LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 12
LMT DODECYL-BETA-D-MALTOSIDE × 16
DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 1
CA CALCIUM ION × 1
RRX (3R)-beta,beta-caroten-3-ol × 3
C7Z (1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol × 3
LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 3
DAO LAURIC ACID × 1
LUT (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 14
CHL CHLOROPHYLL B × 28
SPH SPHINGOSINE × 3
3PH 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE × 4
DGA DIACYL GLYCEROL × 1
PLM PALMITIC ACID × 1
SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 1
ERG ERGOSTEROL × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE;blot for 3 seconds before plunging
|
Resolution 2.52 Å
|
|
7WYI
Native Photosystem I of Chlamydomonas reinhardtii
Deposited 2022-02-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 15
PDB declaration: pentadecameric
|
Chain J
1–41(41 aa)
|
Not recorded
|
CL0 CHLOROPHYLL A ISOMER × 1
CLA CHLOROPHYLL A × 155
PQN PHYLLOQUINONE × 2
SF4 IRON/SULFUR CLUSTER × 3
CHL CHLOROPHYLL B × 10
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6.5
cryo-EM vitrification conditions
Cryogen ETHANE;2.6 microliter of sample were applied to cryo-grids and blotted for 4 seconds using Whatman #1 before plunge freezing.
|
Resolution 3.90 Å
|
|
7WZN
PSI-LHCI from Chlamydomonas reinhardtii with bound ferredoxin
Deposited 2022-02-18
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 16
PDB declaration: hexadecameric
|
Chain J
1–41(41 aa)
|
Not recorded
|
CL0 CHLOROPHYLL A ISOMER × 1
CLA CHLOROPHYLL A × 188
PQN PHYLLOQUINONE × 2
SF4 IRON/SULFUR CLUSTER × 3
CHL CHLOROPHYLL B × 16
FES FE2/S2 (INORGANIC) CLUSTER × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6.5
cryo-EM vitrification conditions
Cryogen ETHANE;2.6 microliter of sample were applied to cryo-grids and blotted for 3.5 seconds using Whatman #1 before plunge freezing.
|
Resolution 4.90 Å
|
|
7ZQ9
Dimeric PSI of Chlamydomonas reinhardtii at 2.74 A resolution (symmetry expanded)
Deposited 2022-04-29
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 24
PDB declaration: 24-meric
|
Chain J
1–40(40 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CL0 CHLOROPHYLL A ISOMER × 1
CLA CHLOROPHYLL A × 226
PQN PHYLLOQUINONE × 2
LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 16
BCR BETA-CAROTENE × 36
SF4 IRON/SULFUR CLUSTER × 3
LMU DODECYL-ALPHA-D-MALTOSIDE × 34
LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 17
LUT (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 20
DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 1
CHL CHLOROPHYLL B × 32
XAT (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 7
NEX (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.74 Å
|
|
7ZQC
Monomeric PSI of Chlamydomonas reinhardtii at 2.31 A resolution
Deposited 2022-04-29
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 20
PDB declaration: eicosameric
|
Chain J
1–40(40 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CL0 CHLOROPHYLL A ISOMER × 1
CLA CHLOROPHYLL A × 198
PQN PHYLLOQUINONE × 2
LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 15
BCR BETA-CAROTENE × 27
SF4 IRON/SULFUR CLUSTER × 3
LMU DODECYL-ALPHA-D-MALTOSIDE × 32
LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 15
LUT (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 18
DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 1
CHL CHLOROPHYLL B × 30
XAT (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 7
NEX (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.31 Å
|
|
7ZQD
Dimeric PSI of Chlamydomonas reinhardtii at 2.97 A resolution
Deposited 2022-04-29
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 40
PDB declaration: 40-meric
|
Chain J
1–40(40 aa)
Chain J2
1–40(40 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CL0 CHLOROPHYLL A ISOMER × 2
CLA CHLOROPHYLL A × 396
PQN PHYLLOQUINONE × 4
LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 30
BCR BETA-CAROTENE × 56
SF4 IRON/SULFUR CLUSTER × 6
LMU DODECYL-ALPHA-D-MALTOSIDE × 66
LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 30
LUT (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 36
DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2
CHL CHLOROPHYLL B × 60
XAT (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 14
NEX (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.97 Å
|
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8H2U
X-ray Structure of photosystem I-LHCI super complex from Chlamydomonas reinhardtii.
Deposited 2022-10-07
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Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
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Assembly 1
Protein heterocomplex
Heteromer;Protein × 20
PDB declaration: eicosameric
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Chain J
1–41(41 aa)
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Not recorded
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CLA CHLOROPHYLL A × 185
SF4 IRON/SULFUR CLUSTER × 3
PQN PHYLLOQUINONE × 2
LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 7
BCR BETA-CAROTENE × 27
DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2
LMT DODECYL-BETA-D-MALTOSIDE × 2
LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 7
LUT (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 12
CHL CHLOROPHYLL B × 26
XAT (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 5
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X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;50 mM Tris-HCl (pH 7.0), 50 mM Li2SO4 and 4.5-7.0 % (w/v) polyethylene glycol (PEG) 6,000
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Resolution 3.40 Å
R-free 0.359
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9SE7
Structure of Cytochrome C6 bound Photosystem I from Chlamydomonas reinhardtii at 2.07 A resolution
Deposited 2025-08-15
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Different oligomeric state
Different ligand/ion
Different structure-quality metrics
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Assembly 1
Protein heterocomplex
Heteromer;Protein × 10
PDB declaration: decameric
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Chain J
1–40(40 aa)
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Non-standard monomer:Yes (specific site not provided by mmCIF)
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CLA CHLOROPHYLL A × 91
PQN PHYLLOQUINONE × 2
LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 3
BCR BETA-CAROTENE × 15
SF4 IRON/SULFUR CLUSTER × 3
LMU DODECYL-ALPHA-D-MALTOSIDE × 3
LMG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 5
DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 1
LUT (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 2
HEC HEME C × 1
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ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5;5mM HEPES, pH 7.5, 0.02% alphaDDM
cryo-EM vitrification conditions
Cryogen ETHANE
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Resolution 2.06 Å
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