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9zma

Crystal structure of Fab 7160 in complex with major repeat region (NANP6)from circumsporozoite protein

Method: X-RAY DIFFRACTION D_max: 164.4 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9zma
deposition_date	2025-12-09
title	Crystal structure of Fab 7160 in complex with major repeat region (NANP6)from circumsporozoite protein
keywords	Antibody for Malaria, IMMUNE SYSTEM; IMMUNE SYSTEM
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	44.47 Å
rg_electron	44.82 Å
i0	567786000.00
molecular_weight	193760.0 kDa
excluded_volume	241680 Å³
envelope_volume	324740 Å³
shell_volume	64158 Å³
envelope_diameter	173.0 Å
shell_rg	46.01 Å
envelope_rg	44.51 Å
shape_rg	44.79 Å
total_rg	44.99 Å
total_atoms	13643
n_residues	1742
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	164.4 Å
rg_real	44.87 Å
rg_real_error	2.49 Å
i0_real	5.6780e+08
i0_real_error	1.1980e+07
rg_reciprocal	44.48 Å
i0_reciprocal	567500000.0000
total_estimate	0.8095
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	47.0 Å
skewness	0.637
kurtosis	0.114
angular_range	— – 0.1750 Å⁻¹
current_alpha	0.0000
highest_alpha	60650000.0000
n_real_points	36
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.617; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.790; Smooth: 0.880

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	Heavy Chain of Fab 7160
formula_weight	24421.5 kDa
src_method	man
entity_count	4

Polymer

type	polypeptide(L)
strand_id	A,C,E,G
atom_count	13936

EVQLVESGGGLVQPGRSLRVSCTTSGFTFGDYAMSWFRQAPGKGLEWVGFIRSKGYGGTPEYAASVKGRFTISRDDSKRTAYLQMNSLKTEDTAVYYCTRVGIEVSTAVYWGPGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHLC

Source

organism	Homo sapiens
ncbi_taxonomy_id	9606
host_organism	Cricetulus griseus

Entity 2 polymer

description	Light Chain of Fab 7160
formula_weight	24246.1 kDa
src_method	man
entity_count	4

Polymer

type	polypeptide(L)
strand_id	B,D,F,H

DIVMTQTPLSLSVTPGQPASISCKSSQSLLDNDGKTYLYWYLQKPGQSPQLVIYEVSNRFSGVPDRFSGSGSGTDFTLKIRRVEAEDVGVYYCMQRIDLPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC

Source

organism	Homo sapiens
ncbi_taxonomy_id	9606
host_organism	Cricetulus griseus

Entity 3 polymer

description	Circumsporozoite protein
formula_weight	2396.4 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	I,J

NANPNANPNANPNANPNANPNANP

Source

organism	Plasmodium falciparum 3D7
ncbi_taxonomy_id	36329
host_organism	synthetic construct

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	293

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6. Citations (1)

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length_a	103.213 Å
length_b	73.131 Å
length_c	134.373 Å
angle_alpha	90.00 °
angle_beta	102.25 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	2.330 Å
resolution_low	41.740 Å
r_factor	0.2074
r_work	0.2067
r_free	0.2361

fit	/app/data/saxs_computation/zm/9zma/9zma.fit
pddf	/app/data/pr_computation/zm/9zma/9zma.pr.out
profile	/app/data/saxs_computation/zm/9zma/9zma.dat

Crystal structure of Fab 7160 in complex with major repeat region (NANP6)from circumsporozoite protein

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 polymer

Polymer

Source

Entity 4 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)