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1bbr

THE STRUCTURE OF RESIDUES 7-16 OF THE A ALPHA CHAIN OF HUMAN FIBRINOGEN BOUND TO BOVINE THROMBIN AT 2.3 ANGSTROMS RESOLUTION

Method: X-RAY DIFFRACTION D_max: 111.0 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1bbr
deposition_date	1992-04-27
title	THE STRUCTURE OF RESIDUES 7-16 OF THE A ALPHA CHAIN OF HUMAN FIBRINOGEN BOUND TO BOVINE THROMBIN AT 2.3 ANGSTROMS RESOLUTION
keywords	SERINE PROTEASE; SERINE PROTEASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	34.73 Å
rg_electron	34.70 Å
i0	167983000.00
molecular_weight	104770.0 kDa
excluded_volume	131380 Å³
envelope_volume	166530 Å³
shell_volume	40332 Å³
envelope_diameter	116.5 Å
shell_rg	40.95 Å
envelope_rg	34.33 Å
shape_rg	34.67 Å
total_rg	35.23 Å
total_atoms	7378
n_residues	915
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	111.0 Å
rg_real	34.72 Å
rg_real_error	0.75 Å
i0_real	1.6800e+08
i0_real_error	2.3310e+06
rg_reciprocal	34.73 Å
i0_reciprocal	168000000.0000
total_estimate	0.8838
solution_quality	GOOD a GOOD solution
n_peaks	3
r_peak_primary	29.0 Å
skewness	0.206
kurtosis	-0.753
angular_range	— – 0.2300 Å⁻¹
current_alpha	0.0000
highest_alpha	265300000.0000
n_real_points	47
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.877; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.973; Smooth: 0.880

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4. Crystallography & Experiment

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5. Entities & Polymer Info (6)

Entity 1 polymer

description	EPSILON-THROMBIN
formula_weight	5735.2 kDa
ec_number	3.4.21.5
src_method	man
entity_count	3

Polymer

type	polypeptide(L)
strand_id	L,J,M
atom_count	8084

TSEDHFQPFFNEKTFGAGEADCGLRPLFEKKQVQDQTEKELFESYIEGR

Source

organism	Bos taurus
common_name	cattle
ncbi_taxonomy_id	9913

Entity 2 polymer

description	EPSILON-THROMBIN
formula_weight	17525.3 kDa
ec_number	3.4.21.5
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	H

IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTT

Source

organism	Bos taurus
common_name	cattle
ncbi_taxonomy_id	9913

Entity 3 polymer

description	EPSILON-THROMBIN
formula_weight	12265.1 kDa
ec_number	3.4.21.5
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	E

SVAEVQPSVLQVVNLPLVERPVCKASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDRLGS

Source

organism	Bos taurus
common_name	cattle
ncbi_taxonomy_id	9913

Entity 4 polymer

description	FIBRINOGEN ALPHA/ALPHA-E CHAIN PRECURSOR
formula_weight	1047.1 kDa
src_method	man
entity_count	3

Polymer

type	polypeptide(L)
strand_id	F,G,I

XDFLAEGGGVR

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606

Entity 5 polymer

description	EPSILON-THROMBIN
formula_weight	29772.4 kDa
ec_number	3.4.21.5
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	K,N

IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVCKASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDRLGS

Source

organism	Bos taurus
common_name	cattle
ncbi_taxonomy_id	9913

Entity 6 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	706

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6. Citations (1)

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length_a	83.020 Å
length_b	89.410 Å
length_c	99.300 Å
angle_alpha	90.00 °
angle_beta	106.64 °
angle_gamma	90.00 °
z_pdb	6

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	2.300 Å
resolution_low	7.000 Å
r_factor	0.1670
r_work	—
r_free	—

fit	/app/data/saxs_computation/bb/1bbr/1bbr.fit
pddf	/app/data/pr_computation/bb/1bbr/1bbr.pr.out
profile	/app/data/saxs_computation/bb/1bbr/1bbr.dat

THE STRUCTURE OF RESIDUES 7-16 OF THE A ALPHA CHAIN OF HUMAN FIBRINOGEN BOUND TO BOVINE THROMBIN AT 2.3 ANGSTROMS RESOLUTION

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

5. Entities & Polymer Info (6)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 polymer

Polymer

Source

Entity 4 polymer

Polymer

Source

Entity 5 polymer

Polymer

Source

Entity 6 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)