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1cz9

ATOMIC RESOLUTION ASV INTEGRASE CORE DOMAIN (D64N) FROM CITRATE

Method: X-RAY DIFFRACTION D_max: 53.5 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1cz9
deposition_date	1999-09-01
title	ATOMIC RESOLUTION ASV INTEGRASE CORE DOMAIN (D64N) FROM CITRATE
keywords	MIXED BETA-SHEET SURROUNDED BY ALPHA-HELICES, TRANSFERASE; TRANSFERASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	15.96 Å
rg_electron	14.91 Å
i0	4952520.00
molecular_weight	15534.0 kDa
excluded_volume	19318 Å³
envelope_volume	21648 Å³
shell_volume	12548 Å³
envelope_diameter	51.7 Å
shell_rg	20.44 Å
envelope_rg	15.29 Å
shape_rg	14.87 Å
total_rg	16.07 Å
total_atoms	1090
n_residues	139
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	53.5 Å
rg_real	15.92 Å
rg_real_error	0.27 Å
i0_real	4.9530e+06
i0_real_error	5.4700e+04
rg_reciprocal	15.93 Å
i0_reciprocal	4953000.0000
total_estimate	0.8746
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	18.3 Å
skewness	0.313
kurtosis	-0.270
angular_range	— – 0.5000 Å⁻¹
current_alpha	0.0000
highest_alpha	1061000.0000
n_real_points	80
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.801; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.987; Smooth: 0.975

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	AVIAN SARCOMA VIRUS INTEGRASE
formula_weight	17854.5 kDa
mutation	D64N, INS(P48, L49, R50, E51, N208, L209)
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	1342

PLREGRGLGPLQIWQTNFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTNL

Source

organism	Avian sarcoma virus
ncbi_taxonomy_id	11876
host_organism	Escherichia coli

Entity 2 non-polymer

description	SULFATE ION
formula_weight	96.1 kDa
src_method	syn
entity_count	1

Entity 3 non-polymer

description	CITRIC ACID
formula_weight	192.1 kDa
src_method	syn
entity_count	1

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	211

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6. Citations (1)

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length_a	66.560 Å
length_b	66.560 Å
length_c	78.360 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 43 21 2
int_tables_number	96
crystal_system	—

resolution	1.200 Å
resolution_low	10.000 Å
r_factor	0.1460
r_work	0.1470
r_free	0.1500

fit	/app/data/saxs_computation/cz/1cz9/1cz9.fit
pddf	/app/data/pr_computation/cz/1cz9/1cz9.pr.out
profile	/app/data/saxs_computation/cz/1cz9/1cz9.dat

ATOMIC RESOLUTION ASV INTEGRASE CORE DOMAIN (D64N) FROM CITRATE

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction