2sni

STRUCTURAL COMPARISON OF TWO SERINE PROTEINASE-PROTEIN INHIBITOR COMPLEXES. EGLIN-C-SUBTILISIN CARLSBERG AND CI-2-SUBTILISIN NOVO

Method: X-RAY DIFFRACTION Dmax: 66.6 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

SUBTILISIN NOVO

Bacillus amyloliquefaciens

UniProt P00782

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain E; UniProt 108–382 Not recorded CHYMOTRYPSIN INHIBITOR 2 × 1 (P01053) CA CALCIUM ION × 2 X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

62 other PDB entries and 82 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name SUBT_BACAM
Isoform
PDB entities 1
Chains and sequence ranges Author chain E; PDBConstruct 1–275; UniProt 108–382

CHYMOTRYPSIN INHIBITOR 2

Hordeum sp.

UniProt P01053

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain I; UniProt 1–83 Not recorded SUBTILISIN NOVO × 1 (P00782) CA CALCIUM ION × 2 X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

19 other PDB entries and 23 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ICI2_HORVU
Isoform
PDB entities 2
Chains and sequence ranges Author chain I; PDBConstruct 1–83; UniProt 1–83

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 2sni

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 2sni
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2. Structure Basics 2. Structure Basics

Entry ID entry_id2sni
Deposition date deposition_date1988-09-05
Structure title titleSTRUCTURAL COMPARISON OF TWO SERINE PROTEINASE-PROTEIN INHIBITOR COMPLEXES. EGLIN-C-SUBTILISIN CARLSBERG AND CI-2-SUBTILISIN NOVO
Keywords keywordsCOMPLEX (PROTEINASE-INHIBITOR), COMPLEX (PROTEINASE-INHIBITOR) complex; COMPLEX (PROTEINASE/INHIBITOR)
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier19.87
Radius of gyration Rg (electron density) rg_electron19.04
Forward intensity I(0) i021093100.00
Molecular weight molecular_weight34897.0 kDa
Excluded volume excluded_volume43622 ų
Envelope volume envelope_volume48568 ų
Hydration-shell volume shell_volume21127 ų
Envelope diameter envelope_diameter65.9
Shell Rg shell_rg25.89
Envelope Rg envelope_rg19.34
Shape Rg shape_rg19.04
Total Rg total_rg19.93
Total atoms total_atoms2453
Residues n_residues339
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax66.6
Rg (real space) rg_real19.78
Rg uncertainty (real space) rg_real_error0.30
I(0) (real space) i0_real2.1090e+07
I(0) uncertainty (real space) i0_real_error2.2730e+05
Rg (reciprocal space) rg_reciprocal19.79
I(0) (reciprocal space) i0_reciprocal21090000.0000
Solution quality estimate total_estimate0.7917
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary25.3
Skewness Skewness skewness0.299
Kurtosis Kurtosis kurtosis-0.154
Angular range angular_range— – 0.4000 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha7416000.0000
Real-space data points n_real_points72
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.763; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

7. Fold Classification (SCOP + CATH) 4 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd2snie_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.41 — Subtilisin-like
Superfamily Superfamily superfamilyc.41.1 — Subtilisin-like
Family Family familyc.41.1.1 — Subtilases
Domain ID domain_idd2snii_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.40 — CI-2 family of serine protease inhibitors
Superfamily Superfamily superfamilyd.40.1 — CI-2 family of serine protease inhibitors
Family Family familyd.40.1.1 — CI-2 family of serine protease inhibitors

CATH v4.4 (2 domains)

Domain ID domain_id2sniE00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily200 — Peptidase S8/S53 domain
Domain ID domain_id2sniI00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology10 — Trypsin Inhibitor V; Chain A
Homologous superfamily homologous superfamily10 — Trypsin Inhibitor V, subunit A

8. Citations (3)

9. Files and Curves (10)