Green fluorescent protein
Aequorea victoria
State in the Current Structure
| Assembly | Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Associated Components | Method and Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|
| 1 | Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric（2） Consistent with protein copy count | Chain B； UniProt 2–238 | Non-standard monomer：Yes (specific site not provided by mmCIF) | K7 × 1 | X-RAY DIFFRACTION X-ray crystallization conditions：VAPOR DIFFUSION, SITTING DROP；277 K；0.2M Sodium Acetate trihydrate, 0.1M TRIS HCl pH 8.5, 30%w/v PEG 4000 | Resolution 1.40 Å R-free 0.170 |
Other States of the Same Protein in the Database
Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.
| Other PDB | Difference from Current Entry 5MA4 | Assembly / Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Non-polymers | Method and Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|---|
| 1B9C Green Fluorescent Protein Mutant F99S, M153T and V163A Deposited 1999-02-09 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric |
Chain A
1–238（238 aa）
Chain B
1–238（238 aa）
Chain C
1–238（238 aa）
Chain D
1–238（238 aa）
|
Mutation：F99S, M153T, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：F99S, M153T, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：F99S, M153T, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：F99S, M153T, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.3；22% PEG 4000, 50 MM HEPES PH 8.5, 50 MM MGCL2, 10 MM 2-MERCAPTOETHANOL, 23% MG/ ML PROTEINA, pH 8.3
|
Resolution 2.40 Å R-free 0.280 |
| 1BFP BLUE VARIANT OF GREEN FLUORESCENT PROTEIN Deposited 1997-04-09 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：S65, H66, AND G67 ARE REPLACED WITH IIC 66, Y145F Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5；277 K；PROTEIN WAS CRYSTALLIZED AT 4 DEGC FROM 100MM SODIUM ACETATE PH 4.5 AND 10-12% PEG3400., temperature 277K
|
Resolution 2.10 Å |
| 1C4F GREEN FLUORESCENT PROTEIN S65T AT PH 4.6 Deposited 1999-08-21 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：65 - 67 REPLACED BY CRO, S65T SUBSTITUTION, Q80R SUBSTITUTION Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；10-13% PEG 3400, 100MM SODIUM ACETATE AND 100 MM AMMONIUM ACETATE, pH 4.6, VAPOR DIFFUSION, HANGING DROP
|
Resolution 2.25 Å |
| 1CV7 Crystal structure of enhanced cyan-emission variant of GFP Deposited 1999-08-23 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–228（228 aa）
|
Mutation：K26R,F64L,S65T,Y66W,N146I,M153T,V163A,N164H Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；298 K；12% PEG-1550, 50mM calcium acetate and 100 mM acetaete buffer, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
|
Resolution 2.50 Å |
| 1EMA GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA Deposited 1996-08-01 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–239（237 aa）
|
Mutation：65 - 67 REPLACED BY CRO, Q80R Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.2；22-26% PEG 4000, 50 MM HEPES PH 8.0-8.4, 50 MM MGCL2, 10 MM 2-MERCAPTOETHANOL, 5-7 MG PROTEIN, pH 8.2
|
Resolution 1.90 Å |
| 1EMB GREEN FLUORESCENT PROTEIN (GFP) FROM AEQUOREA VICTORIA, GLN 80 REPLACED WITH ARG Deposited 1997-01-08 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：Q80R Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 3.8；PROTEIN WAS CRYSTALLIZED FROM 50 MM KH2PO4 AND 20 % (W/V) PEG 8000, PH 3.8.
|
Resolution 2.13 Å R-free 0.250 |
| 1EMC GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT Deposited 1997-03-31 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric |
Chain A
2–237（236 aa）
Chain B
2–237（236 aa）
Chain C
2–237（236 aa）
Chain D
2–237（236 aa）
|
Mutation：INS(A1[B]), F64L, I167T, K238N Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：INS(A1[B]), F64L, I167T, K238N Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：INS(A1[B]), F64L, I167T, K238N Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：INS(A1[B]), F64L, I167T, K238N Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；PROTEIN WAS CRYSTALLIZED BY HANGING DROP METHOD. PROTEIN SOLUTION: 14 MG/ML IN 20 MM KPO4, PH 7.0 WELL SOLUTION: 60% MPD, 50MM TRISCL, PH 8.0 PROTEIN:WELL 1:1, vapor diffusion - hanging drop
|
Resolution 2.30 Å R-free 0.288 |
| 1EME GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT Deposited 1997-03-31 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
2–237（236 aa）
|
Mutation：INS(A1[B]), F64L, I167T, K238N Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；PROTEIN WAS CRYSTALLIZED BY HANGING DROP METHOD. PROTEIN SOLUTION: 13 MG/ML IN 20 MM TRIS/HCL WELL SOLUTION: 1.8 M AS, 100 MM TRIS/HCL, PH 8.5 PROTEIN:WELL 1:1, vapor diffusion - hanging drop
|
Resolution 2.50 Å R-free 0.285 |
| 1EMF GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT Deposited 1997-03-31 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
2–238（237 aa）
|
Mutation：INS(A1[B]), F64L, Y66H, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；PROTEIN WAS CRYSTALLIZED BY HANGING DROP METHOD. PROTEIN SOLUTION: 21 MG/ML IN 20 MM TRIS/HCL WELL SOLUTION: 2.1 M AS, 100 MM TRIS/HCL, PH 8.5 PROTEIN:WELL 1:1, vapor diffusion - hanging drop
|
Resolution 2.40 Å R-free 0.262 |
| 1EMG GREEN FLUORESCENT PROTEIN (65-67 REPLACED BY CRO, S65T SUBSTITUTION, Q80R) Deposited 1998-11-12 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–229（228 aa）
|
Mutation：65 - 67 REPLACED BY CRO, S65T SUBSTITUTION, Q80R SUBSTITUTION Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8；CRYSTALLIZATION CONDITIONS:
22-26% PEG 4000, 50 MM HEPES PH 8.0, 50 MM MGCL2,
12 MG PROTEIN
|
Resolution 2.00 Å |
| 1EMK GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT Deposited 1997-03-31 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
2–237（236 aa）
|
Mutation：INS(A1[B]), F64L, S65C, I167T, K238N Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；PROTEIN WAS CRYSTALLIZED BY HANGING DROP METHOD. PROTEIN SOLUTION: 17 MG/ML IN 20 MM TRISCL WELL SOLUTION: 1.95 M AS, 100MM TRISCL, PH 8.5 PROTEIN:WELL 1:1, vapor diffusion - hanging drop
|
Resolution 2.10 Å R-free 0.282 |
| 1EML GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT Deposited 1997-03-31 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
2–237（236 aa）
|
Mutation：INS(A1[B]), F64L, K238N Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；PROTEIN WAS CRYSTALLIZED BY HANGING DROP METHOD. PROTEIN SOLUTION: 17 MG/ML IN 20 MM TRISCL WELL SOLUTION: 2.0 M AS, 100 MM TRISCL, PH 8.5 (HAMPTON SCREEN I, SOLUTION 4) PROTEIN:WELL 1:1, vapor diffusion - hanging drop
|
Resolution 2.30 Å R-free 0.285 |
| 1EMM GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT Deposited 1997-03-31 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
2–238（237 aa）
|
Mutation：INS(A1[B]), F64L Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；PROTEIN WAS CRYSTALLIZED BY HANGING DROP METHOD. PROTEIN SOLUTION: 13 MG/ML IN 20 MM K-PO4, PH 7.0 WELL SOLUTION: 1.95 M AS, 100 MM TRIS/HCL, PH 8.5 PROTEIN:WELL 1:1, vapor diffusion - hanging drop
|
Resolution 2.30 Å R-free 0.275 |
| 1F09 CRYSTAL STRUCTURE OF THE GREEN FLUORESCENT PROTEIN (GFP) VARIANT YFP-H148Q WITH TWO BOUND IODIDES Deposited 2000-05-15 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：S65G, V68L, S72A, Q80R, T203Y, H148Q Non-standard monomer：Yes (specific site not provided by mmCIF) | IOD IODIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.5；277 K；PEG 1550, sodium acetate, magnesium chloride, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K
|
Resolution 2.14 Å |
| 1F0B CRYSTAL STRUCTURE OF THE GREEN FLUORESCENT PROTEIN (GFP) VARIANT YFP-H148Q Deposited 2000-05-15 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：S65G, V68L, S72A, Q80R, T203Y, H148Q Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.5；277 K；PEG 1550, sodium acetate, magnesium chloride, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K
|
Resolution 2.10 Å |
| 1GFL STRUCTURE OF GREEN FLUORESCENT PROTEIN Deposited 1996-08-23 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–239（238 aa）
|
Mutation：Q80R | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7；FREE TEXT GOES HERE., pH 7.0
|
Resolution 1.90 Å R-free 0.262 |
| 1GFL STRUCTURE OF GREEN FLUORESCENT PROTEIN Deposited 1996-08-23 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
2–239（238 aa）
|
Mutation：Q80R | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7；FREE TEXT GOES HERE., pH 7.0
|
Resolution 1.90 Å R-free 0.262 |
| 1H6R The oxidized state of a redox sensitive variant of green fluorescent protein Deposited 2001-06-22 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8；100 MM HEPES, PH 8.0, 100 MM MGCL2, AND 14% PEG4000
|
Resolution 1.50 Å R-free 0.212 |
| 1H6R The oxidized state of a redox sensitive variant of green fluorescent protein Deposited 2001-06-22 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–238（238 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8；100 MM HEPES, PH 8.0, 100 MM MGCL2, AND 14% PEG4000
|
Resolution 1.50 Å R-free 0.212 |
| 1H6R The oxidized state of a redox sensitive variant of green fluorescent protein Deposited 2001-06-22 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
1–238（238 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8；100 MM HEPES, PH 8.0, 100 MM MGCL2, AND 14% PEG4000
|
Resolution 1.50 Å R-free 0.212 |
| 1HCJ Photoproduct of the wild-type Aequorea victoria Green Fluorescent Protein Deposited 2001-05-04 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric |
Chain A
1–238（238 aa）
Chain D
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.8；277 K；CRYSTALS WERE GROWN AT 4C FROM 50 MM MGCL2, 14-17 % PEG3350 AND 50-100 MM TRIS/CL PH 7.8 - 8.6.
|
Resolution 1.80 Å R-free 0.267 |
| 1HCJ Photoproduct of the wild-type Aequorea victoria Green Fluorescent Protein Deposited 2001-05-04 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric |
Chain B
1–238（238 aa）
Chain C
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.8；277 K；CRYSTALS WERE GROWN AT 4C FROM 50 MM MGCL2, 14-17 % PEG3350 AND 50-100 MM TRIS/CL PH 7.8 - 8.6.
|
Resolution 1.80 Å R-free 0.267 |
| 1HUY CRYSTAL STRUCTURE OF CITRINE, AN IMPROVED YELLOW VARIANT OF GREEN FLUORESCENT PROTEIN Deposited 2001-01-04 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：S65G, V68L, Q69M, S72A, T203Y Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；277 K；50 mM NH4OAc, 50 mM NaOAc, 8% PEG 3400, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 2.20 Å R-free 0.208 |
| 1JBY CRYSTAL STRUCTURE ANALYSIS OF A DUAL-WAVELENGTH EMISSION GREEN FLUORESCENT PROTEIN VARIANT AT LOW PH Deposited 2001-06-07 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：S65T,Q80R,H148G,T203C Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.5；295 K；PEG 1550, citrate, ammonium acetate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 1.80 Å |
| 1JBZ CRYSTAL STRUCTURE ANALYSIS OF A DUAL-WAVELENGTH EMISSION GREEN FLUORESCENT PROTEIN VARIANT AT HIGH PH Deposited 2001-06-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：S65T,Q80R,H148G,T203C Non-standard monomer：Yes (specific site not provided by mmCIF) | MG MAGNESIUM ION × 2 EDO 1,2-ETHANEDIOL × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 9；295 K；PEG 4000, Tris, Magnesium chloride, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 1.50 Å |
| 1JC0 CRYSTAL STRUCTURE ANALYSIS OF A REDOX-SENSITIVE GREEN FLUORESCENT PROTEIN VARIANT IN A REDUCED FORM Deposited 2001-06-07 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：C48S,F64L,S65T,Q80R,S147C,Q204C Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；295 K；PEG 4000, Lithium Sulfate, Tris, DTT, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 2.00 Å |
| 1JC0 CRYSTAL STRUCTURE ANALYSIS OF A REDOX-SENSITIVE GREEN FLUORESCENT PROTEIN VARIANT IN A REDUCED FORM Deposited 2001-06-07 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–238（238 aa）
|
Mutation：C48S,F64L,S65T,Q80R,S147C,Q204C Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；295 K；PEG 4000, Lithium Sulfate, Tris, DTT, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 2.00 Å |
| 1JC0 CRYSTAL STRUCTURE ANALYSIS OF A REDOX-SENSITIVE GREEN FLUORESCENT PROTEIN VARIANT IN A REDUCED FORM Deposited 2001-06-07 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
1–238（238 aa）
|
Mutation：C48S,F64L,S65T,Q80R,S147C,Q204C Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；295 K；PEG 4000, Lithium Sulfate, Tris, DTT, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 2.00 Å |
| 1JC1 CRYSTAL STRUCTURE ANALYSIS OF A REDOX-SENSITIVE GREEN FLUORESCENT PROTEIN VARIANT IN A OXIDIZED FORM Deposited 2001-06-07 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：C48S,F64L,S65T,Q80R,S147C,Q204C Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；295 K；PEG 4000, Lithium Sulfate, Tris, Copper (II) Chloride, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 1.90 Å |
| 1JC1 CRYSTAL STRUCTURE ANALYSIS OF A REDOX-SENSITIVE GREEN FLUORESCENT PROTEIN VARIANT IN A OXIDIZED FORM Deposited 2001-06-07 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–238（238 aa）
|
Mutation：C48S,F64L,S65T,Q80R,S147C,Q204C Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；295 K；PEG 4000, Lithium Sulfate, Tris, Copper (II) Chloride, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 1.90 Å |
| 1JC1 CRYSTAL STRUCTURE ANALYSIS OF A REDOX-SENSITIVE GREEN FLUORESCENT PROTEIN VARIANT IN A OXIDIZED FORM Deposited 2001-06-07 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
1–238（238 aa）
|
Mutation：C48S,F64L,S65T,Q80R,S147C,Q204C Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；295 K；PEG 4000, Lithium Sulfate, Tris, Copper (II) Chloride, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 1.90 Å |
| 1KP5 Cyclic Green Fluorescent Protein Deposited 2001-12-28 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：M1S,S2R,Q25H,Q80R,F99S,Y100F,M141L,M153T,P157Q,V163A,K172E,I219V,I229L,T230V,H231P,G232R,M233G,D234T,E235G Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 10；285 K；ammonium sulfate, glycine, pH 10, VAPOR DIFFUSION, HANGING DROP, temperature 285K
|
Resolution 2.60 Å R-free 0.256 |
| 1KP5 Cyclic Green Fluorescent Protein Deposited 2001-12-28 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–238（238 aa）
|
Mutation：M1S,S2R,Q25H,Q80R,F99S,Y100F,M141L,M153T,P157Q,V163A,K172E,I219V,I229L,T230V,H231P,G232R,M233G,D234T,E235G Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 10；285 K；ammonium sulfate, glycine, pH 10, VAPOR DIFFUSION, HANGING DROP, temperature 285K
|
Resolution 2.60 Å R-free 0.256 |
| 1KP5 Cyclic Green Fluorescent Protein Deposited 2001-12-28 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric |
Chain A
1–238（238 aa）
Chain B
1–238（238 aa）
|
Mutation：M1S,S2R,Q25H,Q80R,F99S,Y100F,M141L,M153T,P157Q,V163A,K172E,I219V,I229L,T230V,H231P,G232R,M233G,D234T,E235G Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：M1S,S2R,Q25H,Q80R,F99S,Y100F,M141L,M153T,P157Q,V163A,K172E,I219V,I229L,T230V,H231P,G232R,M233G,D234T,E235G Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 16 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 10；285 K；ammonium sulfate, glycine, pH 10, VAPOR DIFFUSION, HANGING DROP, temperature 285K
|
Resolution 2.60 Å R-free 0.256 |
| 1KP5 Cyclic Green Fluorescent Protein Deposited 2001-12-28 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric |
Chain A
1–238（238 aa）
Chain B
1–238（238 aa）
|
Mutation：M1S,S2R,Q25H,Q80R,F99S,Y100F,M141L,M153T,P157Q,V163A,K172E,I219V,I229L,T230V,H231P,G232R,M233G,D234T,E235G Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：M1S,S2R,Q25H,Q80R,F99S,Y100F,M141L,M153T,P157Q,V163A,K172E,I219V,I229L,T230V,H231P,G232R,M233G,D234T,E235G Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 16 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 10；285 K；ammonium sulfate, glycine, pH 10, VAPOR DIFFUSION, HANGING DROP, temperature 285K
|
Resolution 2.60 Å R-free 0.256 |
| 1KP5 Cyclic Green Fluorescent Protein Deposited 2001-12-28 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 5 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–238（238 aa）
Chain B
1–238（238 aa）
|
Mutation：M1S,S2R,Q25H,Q80R,F99S,Y100F,M141L,M153T,P157Q,V163A,K172E,I219V,I229L,T230V,H231P,G232R,M233G,D234T,E235G Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：M1S,S2R,Q25H,Q80R,F99S,Y100F,M141L,M153T,P157Q,V163A,K172E,I219V,I229L,T230V,H231P,G232R,M233G,D234T,E235G Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 8 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 10；285 K；ammonium sulfate, glycine, pH 10, VAPOR DIFFUSION, HANGING DROP, temperature 285K
|
Resolution 2.60 Å R-free 0.256 |
| 1KP5 Cyclic Green Fluorescent Protein Deposited 2001-12-28 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 6 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–238（238 aa）
Chain B
1–238（238 aa）
|
Mutation：M1S,S2R,Q25H,Q80R,F99S,Y100F,M141L,M153T,P157Q,V163A,K172E,I219V,I229L,T230V,H231P,G232R,M233G,D234T,E235G Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：M1S,S2R,Q25H,Q80R,F99S,Y100F,M141L,M153T,P157Q,V163A,K172E,I219V,I229L,T230V,H231P,G232R,M233G,D234T,E235G Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 8 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 10；285 K；ammonium sulfate, glycine, pH 10, VAPOR DIFFUSION, HANGING DROP, temperature 285K
|
Resolution 2.60 Å R-free 0.256 |
| 1KP5 Cyclic Green Fluorescent Protein Deposited 2001-12-28 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 7 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–238（238 aa）
|
Mutation：M1S,S2R,Q25H,Q80R,F99S,Y100F,M141L,M153T,P157Q,V163A,K172E,I219V,I229L,T230V,H231P,G232R,M233G,D234T,E235G Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 8 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 10；285 K；ammonium sulfate, glycine, pH 10, VAPOR DIFFUSION, HANGING DROP, temperature 285K
|
Resolution 2.60 Å R-free 0.256 |
| 1MYW CRYSTAL STRUCTURE OF A YELLOW FLUORESCENT PROTEIN WITH IMPROVED MATURATION AND REDUCED ENVIRONMENTAL SENSITIVITY Deposited 2002-10-04 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
2–238（237 aa）
Fragment：residues 2-230
|
Mutation：F46L, F64L, S65G, V68L, S72A, M153T, V163A, S175G, T203Y Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.4；298 K；Tris, ammonium sulfate, PEG400, pH 8.4, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.20 Å R-free 0.248 |
| 1Q4A S65T Q80R Green Fluorescent Protein (GFP) pH 8.5 Deposited 2003-08-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：Q80R, S65T Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；298 K；PEG 4000, MgCl2, BME, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.45 Å R-free 0.201 |
| 1Q4B S65T Q80R Green Fluorescent Protein (GFP) pH 5.5 Deposited 2003-08-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：Q80R, S65T Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.5；PEG 4000, MgCl2, BME, pH 5.5, VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.48 Å R-free 0.231 |
| 1Q4C S65T Q80R T203C Green Fluorescent Protein (GFP) pH 8.5 Deposited 2003-08-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：Q80R, S65T, T203C Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；298 K；PEG 4000, MgCl2, BME, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.55 Å R-free 0.214 |
| 1Q4D S65T Q80R T203C Green Fluorescent Protein (GFP) pH 5.5 Deposited 2003-08-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：Q80R, S65T, T203C Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.5；298 K；PEG 4000, MgCl2, BME, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.58 Å R-free 0.233 |
| 1Q4E S65T Q80R Y145C Green Fluorescent Protein (GFP) pH 8.5 Deposited 2003-08-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：Q80R, S65T, Y145C Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；298 K；PEG 4000, MgCl2, BME, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.38 Å R-free 0.202 |
| 1Q73 S65T Q80R Y145C T203C Green Fluorescent Protein (GFP) pH 8.5 Deposited 2003-08-15 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：Q80R, S65T, Y145C, T203C Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；298 K；PEG 4000, MgCl2, BME, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.60 Å R-free 0.210 |
| 1QXT Crystal structure of precyclized intermediate for the green fluorescent protein R96A variant (A) Deposited 2003-09-08 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–229（229 aa）
Fragment：residues 1-229
|
Mutation：R96A F99S M153T V163A F64L S65T | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；298 K；PEG 4000, MAGNESIUM CHLORIDE, HEPES, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.00 Å R-free 0.257 |
| 1QY3 Crystal structure of precyclized intermediate for the green fluorescent protein R96A variant (B) Deposited 2003-09-09 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–229（229 aa）
Fragment：residues 1-229
|
Mutation：R96A F99S M153T V163A F64L S65T | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；298 K；PEG 4000, Magnesium Chloride, Hepes, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.00 Å R-free 0.242 |
| 1QYF Crystal structure of matured green fluorescent protein R96A variant Deposited 2003-09-10 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–229（229 aa）
Fragment：residues 1-229
|
Mutation：R96A, F99S, M153T, V163A, F64L, S65CRO, Y66CRO, G67CRO Non-standard monomer：Yes (specific site not provided by mmCIF) | MG MAGNESIUM ION × 1 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；298 K；PEG 4000, Magnesium Chloride, Hepes, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.50 Å R-free 0.214 |
| 1QYO Anaerobic precylization intermediate crystal structure for S65G Y66G GFP variant Deposited 2003-09-11 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：F99S, M153T, V163A, F64L, S65G, Y66G | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；298 K；PEG 4000, Magnesium Chloride, Hepes, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.80 Å R-free 0.222 |
| 1RM9 Probing the Role of Tryptophans in Aequorea Victoria Green Fluorescent Proteins with an Expanded Genetic Code Deposited 2003-11-27 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
371–608（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.4；293 K；22% PEG 10000, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.90 Å R-free 0.268 |
| 1RMM Probing the Role of Tryptophans in Aequorea Victoria Green Fluorescent Proteins with an Expanded Genetic Code Deposited 2003-11-28 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
290–517（228 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；293 K；14% PEG 1000, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.90 Å R-free 0.233 |
| 1RMO Probing the Role of Tryptophans in Aequorea Victoria Green Fluorescent Proteins with an Expanded Genetic Code Deposited 2003-11-28 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
314–551（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；293 K；14% PEG 1000, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.80 Å R-free 0.221 |
| 1RMP Probing the Role of Tryptophans in Aequorea Victoria Green Fluorescent Proteins with an Expanded Genetic Code Deposited 2003-11-28 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
290–517（228 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；293 K；14% PEG 1000, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 3.00 Å R-free 0.233 |
| 1RRX Crystallographic Evidence for Isomeric Chromophores in 3-Fluorotyrosyl-Green Fluorescent Protein Deposited 2003-12-09 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
290–517（228 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；293 K；PEG 4000, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.10 Å R-free 0.272 |
| 1W7S Wild-Type Aequorea victoria Green Fluorescent Protein Deposited 2004-09-09 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric |
Chain A
1–238（238 aa）
Chain B
1–238（238 aa）
Chain C
1–238（238 aa）
Chain D
1–238（238 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.8；277 K；CRYSTALS WERE GROWN AT 4C FROM 50 MM MGCL2, 14-17 % PEG3350 AND 50-100 MM TRIS/CL PH 7.8 - 8.6.
|
Resolution 1.85 Å R-free 0.216 |
| 1W7T Photoproduct of the Wild-Type Aequorea victoria Green Fluorescent Protein at 100 K Deposited 2004-09-09 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric |
Chain A
1–238（238 aa）
Chain B
1–238（238 aa）
Chain C
1–238（238 aa）
Chain D
1–238（238 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.8；277 K；CRYSTALS WERE GROWN AT 4C FROM 50 MM MGCL2, 14-17 % PEG3350 AND 50-100 MM TRIS/CL PH 7.8 - 8.6.
|
Resolution 1.85 Å R-free 0.220 |
| 1W7U Photoproduct of the Wild-Type Aequorea victoria Green Fluorescent Protein after structural annealing at 170K Deposited 2004-09-09 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 8 PDB declaration: octameric |
Chain A
1–238（238 aa）
Chain B
1–238（238 aa）
Chain C
1–238（238 aa）
Chain D
1–238（238 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.8；277 K；CRYSTALS WERE GROWN AT 4C FROM 50 MM MGCL2, 14-17 % PEG3350 AND 50-100 MM TRIS/CL PH 7.8 - 8.6.
|
Resolution 1.85 Å R-free 0.226 |
| 1YFP STRUCTURE OF YELLOW-EMISSION VARIANT OF GFP Deposited 1998-08-28 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–229（227 aa）
|
Mutation：S65G, V68L, S72A, Q80R, H148G, T203Y Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；288 K；YFP WAS CONCENTRATED TO 10 MG/ML IN 50 MM HEPES PH 7.5. ROD-SHAPED CRYSTALS WITH APPROXIMATE DIMENSIONS OF 0.8 X 0.12 X 0.03 MM WERE GROWN IN HANGING DROPS CONTAINING 5 MICROLITERS PROTEIN AND 5 MICROLITERS MOTHER LIQUOR AT 15 DEGREES C AFTER 2 WEEKS. THE MOTHER LIQUOR CONTAINED 2.2 M SODIUM/POTASSIUM PHOSPHATE PH 6.9., vapor diffusion - hanging drop, temperature 288K
|
Resolution 2.50 Å |
| 1YFP STRUCTURE OF YELLOW-EMISSION VARIANT OF GFP Deposited 1998-08-28 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
3–229（227 aa）
|
Mutation：S65G, V68L, S72A, Q80R, H148G, T203Y Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；288 K；YFP WAS CONCENTRATED TO 10 MG/ML IN 50 MM HEPES PH 7.5. ROD-SHAPED CRYSTALS WITH APPROXIMATE DIMENSIONS OF 0.8 X 0.12 X 0.03 MM WERE GROWN IN HANGING DROPS CONTAINING 5 MICROLITERS PROTEIN AND 5 MICROLITERS MOTHER LIQUOR AT 15 DEGREES C AFTER 2 WEEKS. THE MOTHER LIQUOR CONTAINED 2.2 M SODIUM/POTASSIUM PHOSPHATE PH 6.9., vapor diffusion - hanging drop, temperature 288K
|
Resolution 2.50 Å |
| 1YHG Uncyclized precursor structure of S65G Y66S V68G GFP variant Deposited 2005-01-07 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：F64L, S65G, Y66S, V68G, F99S, M153T, V163A | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；298 K；PEG 4000, 50 mM MgCl2, 50 mM Hepes 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.50 Å R-free 0.280 |
| 1YHG Uncyclized precursor structure of S65G Y66S V68G GFP variant Deposited 2005-01-07 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
2–238（237 aa）
|
Mutation：F64L, S65G, Y66S, V68G, F99S, M153T, V163A | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；298 K；PEG 4000, 50 mM MgCl2, 50 mM Hepes 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.50 Å R-free 0.280 |
| 1YHH Uncyclized precursor structure of S65A Y66S G67A GFP variant Deposited 2005-01-07 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：F64L, S65A, Y66S, G67A, F99S, M153T, V163A | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；298 K；PEG4000, 50 mM MgCl2, 50 mM Hepes , pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.50 Å R-free 0.228 |
| 1YHI Uncyclized precursor structure of S65A Y66S R96A GFP variant Deposited 2005-01-08 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S65A, Y66S, R96A, F99S, M153T, V163A | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；298 K；PEG4000, 50 mM MgCl2, 50 mM Hepes, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å R-free 0.257 |
| 2AH8 roGFP1-R7. Cystal structure analysis of a rate-enhanced variant of redox-sensitive green fluorescent protein in the oxidized form. Deposited 2005-07-27 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
Fragment：GFP
|
Mutation：Q80R,C48S,S147C,Q204C,S202K,F223R Non-standard monomer：Yes (specific site not provided by mmCIF) | IMD IMIDAZOLE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.6；295 K；sodium citrate, imidazole, pH 7.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 2.24 Å R-free 0.280 |
| 2AH8 roGFP1-R7. Cystal structure analysis of a rate-enhanced variant of redox-sensitive green fluorescent protein in the oxidized form. Deposited 2005-07-27 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–238（238 aa）
Fragment：GFP
|
Mutation：Q80R,C48S,S147C,Q204C,S202K,F223R Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.6；295 K；sodium citrate, imidazole, pH 7.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 2.24 Å R-free 0.280 |
| 2AH8 roGFP1-R7. Cystal structure analysis of a rate-enhanced variant of redox-sensitive green fluorescent protein in the oxidized form. Deposited 2005-07-27 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric |
Chain A
1–238（238 aa）
Fragment：GFP
Chain B
1–238（238 aa）
Fragment：GFP
|
Mutation：Q80R,C48S,S147C,Q204C,S202K,F223R Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：Q80R,C48S,S147C,Q204C,S202K,F223R Non-standard monomer：Yes (specific site not provided by mmCIF) | IMD IMIDAZOLE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.6；295 K；sodium citrate, imidazole, pH 7.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 2.24 Å R-free 0.280 |
| 2AHA Crystal structure analysis of a rate-enhanced variant of redox-sensitive green fluorescent protein in the reduced form, roGFP1-R8. Deposited 2005-07-27 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
Fragment：GFP
|
Mutation：Q80R,C48S,S147C,Q204C,K41D,F223R Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；295 K；sodium phosphate/citrate, ammonium sulfate, DTT, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 1.98 Å R-free 0.275 |
| 2AHA Crystal structure analysis of a rate-enhanced variant of redox-sensitive green fluorescent protein in the reduced form, roGFP1-R8. Deposited 2005-07-27 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–238（238 aa）
Fragment：GFP
|
Mutation：Q80R,C48S,S147C,Q204C,K41D,F223R Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；295 K；sodium phosphate/citrate, ammonium sulfate, DTT, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 1.98 Å R-free 0.275 |
| 2AWJ GFP R96M pre-cyclized intermediate in chromophore formation Deposited 2005-09-01 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–229（228 aa）
Fragment：residues 1-229
|
Mutation：F64L, S65T, R96M, F99S, M153T, V163A | MG MAGNESIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8；295 K；PEG4000, magnesium chloride, Hepes, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K, pH 8.00
|
Resolution 1.60 Å R-free 0.241 |
| 2AWK GFP R96M mature chromophore Deposited 2005-09-01 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–229（229 aa）
Fragment：residues 1-229
|
Mutation：F64L, S65T, R96M, F99S, M153T, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) | MG MAGNESIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；295 K；PEG4000, Magnesium chloride, HEPES, pH 8.00, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 1.15 Å R-free 0.188 |
| 2AWL Mature R96K GFP mutant Deposited 2005-09-01 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–229（229 aa）
Fragment：RESIDUES 1-229
|
Mutation：F64L, S65T, R96K, F99S, M153T, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) | MG MAGNESIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；295 K；PEG4000, Magnesium chloride, HEPES, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 1.85 Å R-free 0.270 |
| 2AWM GFP R96A chromophore maturation recovery mutant R96A Q183R Deposited 2005-09-01 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–229（229 aa）
|
Mutation：F64L, S65T, R96A, F99S, M153T, V163A, Q183R Non-standard monomer：Yes (specific site not provided by mmCIF) | MG MAGNESIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；295 K；PEG4000, Magnesium chloride, HEPES, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 1.70 Å R-free 0.223 |
| 2B3P Crystal structure of a superfolder green fluorescent protein Deposited 2005-09-20 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：S30R, Y39N, F64L, S65T, F99S, N105T, Y145F, M153T, V163A, I171V, A206V Non-standard monomer：Yes (specific site not provided by mmCIF) | CD CADMIUM ION × 9 ACY ACETIC ACID × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 7.5；298 K；Hepes-NaOH, sodium acetate, cadmium sulfate, pH 7.5, VAPOR DIFFUSION, temperature 298K
|
Resolution 1.40 Å R-free 0.218 |
| 2B3Q Crystal structure of a well-folded variant of green fluorescent protein Deposited 2005-09-20 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–238（238 aa）
Chain D
1–238（238 aa）
|
Mutation：F64L, S65T, F99S, M153T, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：F64L, S65T, F99S, M153T, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) | MG MAGNESIUM ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；298 K；PEG 3000, Ca(OAc)2, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.30 Å R-free 0.259 |
| 2B3Q Crystal structure of a well-folded variant of green fluorescent protein Deposited 2005-09-20 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain B
1–238（238 aa）
Chain C
1–238（238 aa）
|
Mutation：F64L, S65T, F99S, M153T, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：F64L, S65T, F99S, M153T, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；298 K；PEG 3000, Ca(OAc)2, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.30 Å R-free 0.259 |
| 2DUE crystal structure of a green fluorescent protein variant S65T/H148D at pH 10 Deposited 2006-07-23 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：S65T, H148D, Q80R Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 10；298 K；100mM MgCl2, 100mM CHES pH 10, 26% PEG 4000, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.24 Å R-free 0.204 |
| 2DUF crystal structure of a green fluorescent protein variant S65T/H148D at pH 5.6 Deposited 2006-07-23 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：S65T, H148D, Q80R Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.6；298 K；100mM MgCl2, 100mM NaOAc pH 5.6, 26% PEG 4000, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.50 Å R-free 0.244 |
| 2DUG crystal structure of a green fluorescent protein S65T/H148N at pH 5 Deposited 2006-07-23 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：S65T, H148N, Q80R Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；298 K；50mM Li2SO4, 100mM Acetate pH 9.5, 30% PEG 4000, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.40 Å R-free 0.241 |
| 2DUH crystal structure of a green fluorescent protein variant S65T/H148N at pH 9.5 Deposited 2006-07-23 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：S65T, H148N, Q80R Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 9.5；298 K；50mM Li2SO4, 100mM TRIS pH 9.5, 30% PEG 4000, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.20 Å R-free 0.209 |
| 2DUI crystal structure of a green fluorescent protein variant H148D at pH 9 Deposited 2006-07-23 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：H148D, Q80R Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 9；298 K；100mM MgCl2, 100mM Tris pH 8.5, 30% PEG 1550, pH 9, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.36 Å R-free 0.216 |
| 2EMD GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT Deposited 1997-03-31 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–238（238 aa）
|
Mutation：INS(A1[B]), F64L, Y66H Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；PROTEIN WAS CRYSTALLIZED BY HANGING DROP METHOD. PROTEIN SOLUTION: 21 MG/ML IN 20 MM TRIS/HCL WELL SOLUTION: 2.1 M AS, 100 MM TRIS/HCL, PH 8.5 PROTEIN:WELL 1:1, vapor diffusion - hanging drop
|
Resolution 2.00 Å R-free 0.236 |
| 2EMN GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT Deposited 1997-03-31 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–238（238 aa）
|
Mutation：INS(A1[B]), F64L, Y66H Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；PROTEIN WAS CRYSTALLIZED BY HANGING DROP METHOD. PROTEIN SOLUTION: 21 MG/ML IN 20 MM TRIS/HCL, PH 8.0. WELL SOLUTION: 2.1 M AS, 100 MM TRIS/HCL, PH 8.5. PROTEIN:WELL 1:1., vapor diffusion - hanging drop
|
Resolution 2.30 Å R-free 0.299 |
| 2EMO GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT Deposited 1997-03-31 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–238（238 aa）
|
Mutation：INS(A1[B]), F64L, Y66H, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；PROTEIN WAS CRYSTALLIZED BY HANGING DROP METHOD. PROTEIN SOLUTION: 21 MG/ML IN 20 MM TRIS/HCL, PH 8.0 WELL SOLUTION: 1.95 M AS, 100 MM TRIS HCL, PH 8.5 PROTEIN:WELL 1:1, vapor diffusion - hanging drop
|
Resolution 2.60 Å R-free 0.343 |
| 2FWQ Reduced enolate chromophore intermediate for Y66H GFP variant Deposited 2006-02-02 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：F64L, S65T, Y66H, F99S, H148G, M153T, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) | MG MAGNESIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8；298 K；50 mM MgCl2, 50 mM Hepes, 20% PEG 4000, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K, pH 8.00
|
Resolution 1.40 Å R-free 0.198 |
| 2FZU Reduced enolate chromophore intermediate for GFP variant Deposited 2006-02-10 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：F64L, S65T, F99S, M153T, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) | MG MAGNESIUM ION × 1 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；298 K；50 mM MgCl2, 50 mM Hepes, 20% PEG 4K, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.25 Å R-free 0.199 |
| 2G16 Structure of S65A Y66S GFP variant after backbone fragmentation Deposited 2006-02-13 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
2–64（63 aa）
Fragment：residues 2-64
Chain B
65–238（174 aa）
Fragment：residues 65-238
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：S65A, Y66S, F99S, M153T, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；298 K；50 mM MgCl2, 50 mM Hepes, 20% PEG 4000, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.00 Å R-free 0.241 |
| 2G2S Structure of S65G Y66S GFP variant after spontaneous peptide hydrolysis Deposited 2006-02-16 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
2–65（64 aa）
Chain B
66–238（173 aa）
|
Mutation：F64L, S65G Mutation：Y66S, F99S, M153T, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) | MG MAGNESIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8；298 K；50 mM MgCl2, 50 mM Hepes, 20% PEG 4000, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K, pH 8.00
|
Resolution 1.20 Å R-free 0.174 |
| 2G3D Structure of S65G Y66A GFP variant after spontaneous peptide hydrolysis Deposited 2006-02-17 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
2–65（64 aa）
Chain B
66–238（173 aa）
|
Mutation：F64L, S65G Mutation：Y66A, F99S, M153T, V163A | MG MAGNESIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；298 K；50 mM MgCl2, 50 mM Hepes, 20% PEG 4000, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.35 Å R-free 0.215 |
| 2G5Z Structure of S65G Y66S GFP variant after spontaneous peptide hydrolysis and decarboxylation Deposited 2006-02-23 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
2–65（64 aa）
Chain B
66–238（173 aa）
|
Mutation：S65G Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：Y66S, F99S, M153T, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) | MG MAGNESIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；298 K；50 mM MgCl2, 50 mM Hepes, 20% PEG 4000, VAPOR DIFFUSION, HANGING DROP, temperature 298K, pH 8.0
|
Resolution 1.80 Å R-free 0.232 |
| 2G6E Structure of cyclized F64L S65A Y66S GFP variant Deposited 2006-02-24 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：F64L, S65A, Y66S, F99S, M153T, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) | MG MAGNESIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；298 K；50 mM MgCl2, 50 mM Hepes, 20% PEG 4000, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.30 Å R-free 0.187 |
| 2H6V Spectroscopic and structural study of the heterotropic linkage between halide and proton ion binding to GFP proteins- E2(GFP) APO FORM Deposited 2006-06-01 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 5；14% (w/v) PEG3350, 100 mM NH4 acetate pH 5.0, 0.2 M NH4F, pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 100K
|
Resolution 1.47 Å R-free 0.187 |
| 2H9W Green fluorescent protein ground states: the influence of a second protonation site near the chromophore Deposited 2006-06-12 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–237（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 9；298 K；AS, Tris, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.82 Å R-free 0.186 |
| 2HCG Structure of S65T Y66F GFP variant after cyclization, carbon-carbon bond cleavage, and oxygen incorporation reactions Deposited 2006-06-16 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：F64L, S65T, Y66F, F99S, M153T, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) | MG MAGNESIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；298 K；19% PEG 4K, 50 mM MgCl2, 50 mM Hepes, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.35 Å R-free 0.188 |
| 2HFC Structure of S65T Y66F R96A GFP variant in precursor state Deposited 2006-06-23 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：F64L, S65T, Y66F, R96A, F99S, M153T, V163A | MG MAGNESIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；298 K；19% PEG 4K, 50 mM MgCl2, 50 mM Hepes, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.20 Å R-free 0.203 |
| 2HGD Structure of S65A Y66F GFP variant with an oxidized chromophore Deposited 2006-06-26 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S65A, Y66F, F99S, M153T, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；298 K；19% PEG 4K, 50 mM MgCl2, 50 mM Hepes, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.60 Å R-free 0.239 |
| 2HGY Structure of S65A Y66F E222A GFP variant after cyclization and carbon-carbon bond cleavage Deposited 2006-06-27 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S65A, Y66F, F99S, M153T, V163A, E222A Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；298 K；19% PEG 4K, 50 mM MgCl2, 50 mM Hepes, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.05 Å R-free 0.260 |
| 2HJO Crystal structure of V224H design intermediate for GFP metal ion reporter Deposited 2006-06-30 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：F64L S65T V224H Non-standard monomer：Yes (specific site not provided by mmCIF) | MG MAGNESIUM ION × 1 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；298 K；19% PEG 4K, 50 mM MgCl2, 50 mM Hepes, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.25 Å R-free 0.165 |
| 2HQZ Crystal structure of L42H design intermediate for GFP metal ion reporter Deposited 2006-07-19 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：F64L, S65T, L42H Non-standard monomer：Yes (specific site not provided by mmCIF) | MG MAGNESIUM ION × 2 EDO 1,2-ETHANEDIOL × 7 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；298 K；19% PEG 4K, 50 mM MgCl2, 50 mM Hepes, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.20 Å R-free 0.179 |
| 2HRS Crystal structure of L42H V224H design intermediate for GFP metal ion reporter Deposited 2006-07-20 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：F64L S65T F99S M153T V163A L42H V224H Non-standard monomer：Yes (specific site not provided by mmCIF) | MG MAGNESIUM ION × 1 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；298 K；19% PEG 4K, 50 mM MgCl2, 50 mM Hepes, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.40 Å R-free 0.192 |
| 2JAD Yellow fluorescent protein - glutaredoxin fusion protein Deposited 2006-11-27 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 10；50MM BICARBONATE PH 10 1.5-1.75M MGSO4
|
Resolution 2.70 Å R-free 0.247 |
| 2O24 Spectroscopic and Structural Study of the Heterotropic Linkage between Halide and Proton Ion Binding to Gfp Proteins: E2(GFP)-Cl Complex Deposited 2006-11-29 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：F64L, T203Y, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；14% (W/V) PEG 3350, 100 MM NH4 ACETATE, 0.2 M NH4CL, PH 5.0, VAPOR DIFFUSION, HANGING DROP
|
Resolution 1.45 Å R-free 0.192 |
| 2O29 Spectroscopic and Structural Study of the Heterotropic Linkage between Halide and Proton Ion Binding to Gfp Proteins: E2(GFP)-BR Complex Deposited 2006-11-29 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：F64L, T203Y, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | BR BROMIDE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；14% (W/V) PEG 3350, 100 MM NH4 ACETATE, 0.2 M NH4Br, PH 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 100K
|
Resolution 1.80 Å R-free 0.208 |
| 2O2B Spectroscopic and Structural Study of the Heterotropic Linkage between Halide and Proton Ion Binding to Gfp Proteins: E2(GFP)-I Complex Deposited 2006-11-29 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：F64L, T203Y, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | IOD IODIDE ION × 9 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；14% (W/V) PEG 3350, 100 MM NH4 ACETATE, 0.2 M NH4I, PH 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 100K
|
Resolution 1.94 Å R-free 0.234 |
| 2OKW A non-invasive GFP-based biosensor for mercury ions Deposited 2007-01-17 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：S65T, R80Q, S205C Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.5；298 K；100mM Pipes, 30% PEG 8000, 200mM Na-acetate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å R-free 0.268 |
| 2OKW A non-invasive GFP-based biosensor for mercury ions Deposited 2007-01-17 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–238（238 aa）
|
Mutation：S65T, R80Q, S205C Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.5；298 K；100mM Pipes, 30% PEG 8000, 200mM Na-acetate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å R-free 0.268 |
| 2OKW A non-invasive GFP-based biosensor for mercury ions Deposited 2007-01-17 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
1–238（238 aa）
|
Mutation：S65T, R80Q, S205C Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.5；298 K；100mM Pipes, 30% PEG 8000, 200mM Na-acetate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å R-free 0.268 |
| 2OKW A non-invasive GFP-based biosensor for mercury ions Deposited 2007-01-17 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 4 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain D
1–238（238 aa）
|
Mutation：S65T, R80Q, S205C Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.5；298 K；100mM Pipes, 30% PEG 8000, 200mM Na-acetate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å R-free 0.268 |
| 2OKW A non-invasive GFP-based biosensor for mercury ions Deposited 2007-01-17 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 5 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain E
1–238（238 aa）
|
Mutation：S65T, R80Q, S205C Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.5；298 K；100mM Pipes, 30% PEG 8000, 200mM Na-acetate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å R-free 0.268 |
| 2OKW A non-invasive GFP-based biosensor for mercury ions Deposited 2007-01-17 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 6 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain F
1–238（238 aa）
|
Mutation：S65T, R80Q, S205C Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.5；298 K；100mM Pipes, 30% PEG 8000, 200mM Na-acetate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å R-free 0.268 |
| 2OKY A non-invasive GFP-based biosensor for mercury ions Deposited 2007-01-18 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：S65T, R80Q, S205C Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.5；298 K；32% PEG 8000, 100mM PIPES, 200mM ammonium sulfate, pH 6.5, VAPOR DIFFUSION, HANGING DROP
|
Resolution 2.40 Å R-free 0.302 |
| 2OKY A non-invasive GFP-based biosensor for mercury ions Deposited 2007-01-18 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–238（238 aa）
|
Mutation：S65T, R80Q, S205C Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.5；298 K；32% PEG 8000, 100mM PIPES, 200mM ammonium sulfate, pH 6.5, VAPOR DIFFUSION, HANGING DROP
|
Resolution 2.40 Å R-free 0.302 |
| 2Q57 X-ray structure of Cerulean GFP: A tryptophan-based chromophore useful for fluorescence lifetime imaging Deposited 2007-05-31 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：F64L, S72A, Q80R, Y145A, N146I, H148D, M153T, V163A, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；277 K；100mM sodium acetate, 19% PEG 4000, 1mM EDTA, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 2.00 Å R-free 0.262 |
| 2QLE GFP/S205V mutant Deposited 2007-07-12 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：Q80R, S205V Non-standard monomer：Yes (specific site not provided by mmCIF) | IMD IMIDAZOLE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8；298 K；100mM Imidazol pH 8.0, 1.1M Na Citrate at room temperature for 6-7 months., temperature 298K
|
Resolution 1.59 Å R-free 0.256 |
| 2QLE GFP/S205V mutant Deposited 2007-07-12 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–238（238 aa）
|
Mutation：Q80R, S205V Non-standard monomer：Yes (specific site not provided by mmCIF) | IMD IMIDAZOLE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8；298 K；100mM Imidazol pH 8.0, 1.1M Na Citrate at room temperature for 6-7 months., temperature 298K
|
Resolution 1.59 Å R-free 0.256 |
| 2QLE GFP/S205V mutant Deposited 2007-07-12 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
1–238（238 aa）
|
Mutation：Q80R, S205V Non-standard monomer：Yes (specific site not provided by mmCIF) | IMD IMIDAZOLE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8；298 K；100mM Imidazol pH 8.0, 1.1M Na Citrate at room temperature for 6-7 months., temperature 298K
|
Resolution 1.59 Å R-free 0.256 |
| 2QLE GFP/S205V mutant Deposited 2007-07-12 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain D
1–238（238 aa）
|
Mutation：Q80R, S205V Non-standard monomer：Yes (specific site not provided by mmCIF) | IMD IMIDAZOLE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8；298 K；100mM Imidazol pH 8.0, 1.1M Na Citrate at room temperature for 6-7 months., temperature 298K
|
Resolution 1.59 Å R-free 0.256 |
| 2QRF Green Fluorescent Protein: Cyclized-only Intermediate of Chromophore Maturation in the Q183E variant Deposited 2007-07-28 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–230（230 aa）
|
Mutation：F64L, F99S, M153T, V163A, Q183E Non-standard monomer：Yes (specific site not provided by mmCIF) | MG MAGNESIUM ION × 1 EDO 1,2-ETHANEDIOL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；298 K；8-12% Peg 4000, 50 mM Magnesium Chloride, 50 mM Hepes, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.50 Å R-free 0.229 |
| 2QT2 Cyclized-Dehydrated Intermediate of GFP Variant Q183E in Chromophore Maturation Deposited 2007-07-31 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：F64L, F99S, M153T, V163A, Q183E Non-standard monomer：Yes (specific site not provided by mmCIF) | EDO 1,2-ETHANEDIOL × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；298 K；Peg4000, Magnesium chloride, Hepes, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.31 Å R-free 0.189 |
| 2QU1 Crystal Structure of a Cyclized GFP Variant Deposited 2007-08-03 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；Protein solution (4.95 mg/ml Protein, 0.050 M Sodium chloride, 0.0003 M TCEP, 0.005 M Bis-Tris pH 7.0) mixed in a 1:1 ratio with the Well solution (0.080 M Calcium chloride, 15% PEG 4000, 0.1 M HEPPS pH 8.5) and cryoprotected with well solution supplemented with 20% Glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.70 Å R-free 0.220 |
| 2QZ0 Mature Q183E variant of Green Fluorescent Protein Chromophore Deposited 2007-08-15 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–229（228 aa）
|
Mutation：F64L, F99S, M153T, V163A, Q183E Non-standard monomer：Yes (specific site not provided by mmCIF) | MG MAGNESIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；298 K；Peg4000, Magnesium chloride, Hepes, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.20 Å R-free 0.170 |
| 2WSN Structure of Enhanced Cyan Fluorescent Protein at physiological pH Deposited 2009-09-08 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
Fragment：RESIDUES 2-238
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5；19.5% PEG8000, 4% GLYCEROL, 1M HEPES PH 7.5
|
Resolution 1.37 Å R-free 0.185 |
| 2WSO Structure of Cerulean Fluorescent Protein at physiological pH Deposited 2009-09-08 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
Fragment：RESIDUES 2-238
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7；15% PEG 8000, 0.1M MGCL2, 0.1 M HEPES PH 7.0
|
Resolution 1.15 Å R-free 0.177 |
| 2WUR Atomic resolution structure of GFP measured on a rotating anode Deposited 2009-10-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | IPA ISOPROPYL ALCOHOL × 1 EOH ETHANOL × 7 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；HANGING DROP VAPOR DIFFUSION: 2 UL PROTEIN (10 MG/ML IN 20 MM TRIS, PH 8.0) PLUS 2 UL RESERVOIR (40% ETHANOL, 10 % DIOXANE)
|
Resolution 0.90 Å R-free 0.174 |
| 2Y0G X-ray structure of Enhanced Green Fluorescent Protein (EGFP) Deposited 2010-12-02 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.2；50 MM HEPES PH 8.2, 24% PEG 4000, 50 MM MGCL2, 10 MM BETA-MERCAPTOEPTHANOL
|
Resolution 1.50 Å R-free 0.188 |
| 2YDZ X-ray structure of the cyan fluorescent protein SCFP3A (K206A mutant) Deposited 2011-03-25 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.75；16 MG/ML PROTEIN, 13% PEG8000, 100 MM MGCL2, 100 MM HEPES PH 6.75
|
Resolution 1.59 Å R-free 0.193 |
| 2YE0 X-ray structure of the cyan fluorescent protein mTurquoise (K206A mutant) Deposited 2011-03-25 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.75；16 MG/ML PROTEIN, 14% PEG8000, 100 MM MGCL2, 100 MM HEPES PH 6.75
|
Resolution 1.47 Å R-free 0.185 |
| 2YE1 X-ray structure of the cyan fluorescent proteinmTurquoise-GL (K206A mutant) Deposited 2011-03-25 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | MG MAGNESIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7；35 MG/ML PROTEIN, 14% PEG8000, 100 MM MGCL2, 100 MM HEPES PH 7.00
|
Resolution 1.63 Å R-free 0.194 |
| 3CB9 Development of a family of redox-sensitive green fluorescent protein indicators for use in relatively oxidizing subcellular environments Deposited 2008-02-21 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：C48S,F64L,F99S,S147CR,H148S,M153T,V163A,I167T,Q204C Non-standard monomer：Yes (specific site not provided by mmCIF) | MG MAGNESIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；298 K；0.1M tris, 22% PEG 1550, 0.02M magnesium chloride, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.31 Å R-free 0.169 |
| 3CBE Development of a family of redox-sensitive green fluorescent protein indicators for use in relatively oxidizing subcellular environments Deposited 2008-02-21 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：C48S,F64L,F99S,S147CR,H148S,M153T,V163A,I167T,Q204C Non-standard monomer：Yes (specific site not provided by mmCIF) | MG MAGNESIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；298 K；0.1M tris, 22% PEG 1550, 0.02M magnesium chloride. After crystal formation TCEP added to 20mM., pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.49 Å R-free 0.188 |
| 3CD1 Development of a family of redox-sensitive green fluorescent protein indicators for use in relatively oxidizing subcellular environments Deposited 2008-02-26 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：C48S,F64L,F99S,S147CR,H148S,M153T,V163A,I167T,Q204C Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；298 K；0.1M tris, 24% PEG 1550, 0.04M sodium acetate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.31 Å R-free 0.184 |
| 3CD9 Development of a family of redox-sensitive green fluorescent protein indicators for use in relatively oxidizing subcellular environments Deposited 2008-02-26 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：C48S,F64L,F99S,S147CR,H148S,M153T,V163A,I167T,Q204C Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；298 K；0.1M tris, 24% PEG 1550, 0.04M sodium acetate. TCEP added to 20mM after crystal formation., pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.50 Å R-free 0.193 |
| 3DPW Structure of the Yellow Fluorescent Protein Citrine Frozen at 1 Atmosphere Number 1: Structure 1 in a Series of 26 High Pressure Structures Deposited 2008-07-09 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S65G, V68L, Q69M, S72A, T203Y Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；277 K；Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.59 Å R-free 0.284 |
| 3DPX Structure of the Yellow Fluorescent Protein Citrine Frozen at 5000 Atmospheres: Structure 26 in a Series of 26 High Pressure Structures Deposited 2008-07-09 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S65G, V68L, Q69M, S72A, T203Y Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；277 K；Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.50 Å R-free 0.240 |
| 3DPZ Structure of the Yellow Fluorescent Protein Citrine Frozen at 4000 Atmospheres Number 3: Structure 25 in a Series of 26 High Pressure Structures Deposited 2008-07-09 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S65G, V68L, Q69M, S72A, T203Y Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；277 K；Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.70 Å R-free 0.294 |
| 3DQ1 Structure of the Yellow Fluorescent Protein Citrine Frozen at 4000 Atmospheres Number 2: Structure 24 in a Series of 26 High Pressure Structures Deposited 2008-07-09 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S65G, V68L, Q69M, S72A, T203Y Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；277 K；Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.70 Å R-free 0.296 |
| 3DQ2 Structure of the Yellow Fluorescent Protein Citrine Frozen at 4000 Atmospheres Number 1: Structure 23 in a Series of 26 High Pressure Structures Deposited 2008-07-09 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S65G, V68L, Q69M, S72A, T203Y Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；277 K；Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.60 Å R-free 0.282 |
| 3DQ3 Structure of the Yellow Fluorescent Protein Citrine Frozen at 2500 Atmospheres: Structure 22 in a Series of 26 High Pressure Structures Deposited 2008-07-09 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S65G, V68L, Q69M, S72A, T203Y Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；277 K；Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.70 Å R-free 0.253 |
| 3DQ4 Structure of the Yellow Fluorescent Protein Citrine Frozen at 2000 Atmospheres Number 2: Structure 20 in a Series of 26 High Pressure Structures Deposited 2008-07-09 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S65G, V68L, Q69M, S72A, T203Y Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；277 K；Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.47 Å R-free 0.240 |
| 3DQ5 Structure of the Yellow Fluorescent Protein Citrine Frozen at 1960 Atmospheres: Structure 19 in a Series of 26 High Pressure Structures Deposited 2008-07-09 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S65G, V68L, Q69M, S72A, T203Y Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；277 K；Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.50 Å R-free 0.255 |
| 3DQ6 Structure of the Yellow Fluorescent Protein Citrine Frozen at 1920 Atmospheres Number 2: Structure 18 in a Series of 26 High Pressure Structures Deposited 2008-07-09 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S65G, V68L, Q69M, S72A, T203Y Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；277 K；Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.60 Å R-free 0.255 |
| 3DQ7 Structure of the Yellow Fluorescent Protein Citrine Frozen at 1920 Atmospheres Number 1: Structure 17 in a Series of 26 High Pressure Structures Deposited 2008-07-09 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S65G, V68L, Q69M, S72A, T203Y Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；277 K；Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.23 Å R-free 0.250 |
| 3DQ8 Structure of the Yellow Fluorescent Protein Citrine Frozen at 1500 Atmospheres Number 2: Structure 16 in a Series of 26 High Pressure Structures Deposited 2008-07-09 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S65G, V68L, Q69M, S72A, T203Y Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；277 K；Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.51 Å R-free 0.283 |
| 3DQ9 Structure of the Yellow Fluorescent Protein Citrine Frozen at 1500 Atmospheres Number 1: Structure 15 in a Series of 26 High Pressure Structures Deposited 2008-07-09 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S65G, V68L, Q69M, S72A, T203Y Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；277 K；Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.40 Å R-free 0.271 |
| 3DQA Structure of the Yellow Fluorescent Protein Citrine Frozen at 1250 Atmospheres Number 4: Structure 14 in a Series of 26 High Pressure Structures Deposited 2008-07-09 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S65G, V68L, Q69M, S72A, T203Y Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；277 K；Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.44 Å R-free 0.245 |
| 3DQC Structure of the Yellow Fluorescent Protein Citrine Frozen at 1250 Atmospheres Number 3: Structure 13 in a Series of 26 High Pressure Structures Deposited 2008-07-09 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S65G, V68L, Q69M, S72A, T203Y Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；277 K；Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.49 Å R-free 0.279 |
| 3DQD Structure of the Yellow Fluorescent Protein Citrine Frozen at 1250 Atmospheres Number 2: Structure 12 in a Series of 26 High Pressure Structures Deposited 2008-07-09 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S65G, V68L, Q69M, S72A, T203Y Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；277 K；Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.40 Å R-free 0.280 |
| 3DQE Structure of the Yellow Fluorescent Protein Citrine Frozen at 1250 Atmospheres Number 1: Structure 11 in a Series of 26 High Pressure Structures Deposited 2008-07-09 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S65G, V68L, Q69M, S72A, T203Y Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；277 K；Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.43 Å R-free 0.263 |
| 3DQF Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 6: Structure 10 in a Series of 26 High Pressure Structures Deposited 2008-07-09 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S65G, V68L, Q69M, S72A, T203Y Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；277 K；Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.46 Å R-free 0.244 |
| 3DQH Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 5: Structure 9 in a Series of 26 High Pressure Structures Deposited 2008-07-09 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S65G, V68L, Q69M, S72A, T203Y Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；277 K；Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.45 Å R-free 0.237 |
| 3DQI Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 4: Structure 8 in a Series of 26 High Pressure Structures Deposited 2008-07-09 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S65G, V68L, Q69M, S72A, T203Y Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；277 K；Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.42 Å R-free 0.266 |
| 3DQJ Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 3: Structure 7 in a Series of 26 High Pressure Structures Deposited 2008-07-09 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S65G, V68L, Q69M, S72A, T203Y Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；277 K；Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.51 Å R-free 0.298 |
| 3DQK Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 2: Structure 6 in a Series of 26 High Pressure Structures Deposited 2008-07-09 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S65G, V68L, Q69M, S72A, T203Y Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；277 K；Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.40 Å R-free 0.265 |
| 3DQL Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 1: Structure 5 in a Series of 26 High Pressure Structures Deposited 2008-07-09 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S65G, V68L, Q69M, S72A, T203Y Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；277 K；Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.47 Å R-free 0.271 |
| 3DQM Structure of the Yellow Fluorescent Protein Citrine Frozen at 750 Atmospheres: Structure 4 in a Series of 26 High Pressure Structures Deposited 2008-07-09 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S65G, V68L, Q69M, S72A, T203Y Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；277 K；Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.44 Å R-free 0.260 |
| 3DQN Structure of the Yellow Fluorescent Protein Citrine Frozen at 500 Atmospheres: Structure 3 in a Series of 26 High Pressure Structures Deposited 2008-07-09 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S65G, V68L, Q69M, S72A, T203Y Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；277 K；Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.44 Å R-free 0.257 |
| 3DQO Structure of the Yellow Fluorescent Protein Citrine Frozen at 1 Atmosphere Number 2: Structure 2 in a Series of 26 High Pressure Structures Deposited 2008-07-09 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S65G, V68L, Q69M, S72A, T203Y Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；277 K；Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.50 Å R-free 0.259 |
| 3DQU Structure of the Yellow Fluorescent Protein Citrine Frozen at 2000 Atmospheres Number 1: Structure 20 in a Series of 26 High Pressure Structures Deposited 2008-07-09 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S65G, V68L, Q69M, S72A, T203Y Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；277 K；Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.42 Å R-free 0.257 |
| 3EK4 Calcium-saturated GCaMP2 Monomer Deposited 2008-09-18 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
149–238（90 aa）
Chain A
2–144（143 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；298 K；0.1 M Magnesium formate dihydrate, 15% w/v Polyethylene glycol 3,350, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.65 Å R-free 0.280 |
| 3EK7 Calcium-saturated GCaMP2 dimer Deposited 2008-09-18 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
149–238（90 aa）
Chain A
2–144（143 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 8 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；298 K；0.2 M lithium sulfate monohydrate, 0.1 M Tris-HCl pH 8.5, 30%(w/v) polyethylene glycol 4000, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.85 Å R-free 0.241 |
| 3EK8 Calcium-saturated GCaMP2 T116V/G87R mutant monomer Deposited 2008-09-19 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
149–238（90 aa）
Chain A
2–144（143 aa）
|
Mutation：T116V, G87R Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：T116V, G87R Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；298 K；0.1 M Magnesium formate dihydrate, 15% w/v Polyethylene glycol 3,350, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.80 Å R-free 0.266 |
| 3EKH Calcium-saturated GCaMP2 T116V/K378W mutant monomer Deposited 2008-09-19 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
149–238（90 aa）
Chain A
2–144（143 aa）
|
Mutation：T116V, K378W Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：T116V, K378W Non-standard monomer：Yes (specific site not provided by mmCIF) | GOL GLYCEROL × 1 CA CALCIUM ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；298 K；0.1 M Magnesium formate dihydrate, 15% w/v Polyethylene glycol 3,350, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.00 Å R-free 0.224 |
| 3EKJ Calcium-free GCaMP2 (calcium binding deficient mutant) Deposited 2008-09-19 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
149–238（90 aa）
Chain A
2–144（143 aa）
|
Mutation：T329G, E334Q, D359G, E370Q, D396G, E407Q, D432G, E443Q Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：T329G, E334Q, D359G, E370Q, D396G, E407Q, D432G, E443Q Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.5；298 K；0.2 M Lithium sulfate monohydrate, 0.1 M BIS-TRIS pH 5.5, 25% w/v Polyethylene glycol 3,350, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.80 Å R-free 0.280 |
| 3EVP crystal structure of circular-permutated EGFP Deposited 2008-10-13 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
149–238（90 aa）
Chain A
2–144（143 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.45 Å R-free 0.174 |
| 3EVR Crystal structure of Calcium bound monomeric GCAMP2 Deposited 2008-10-13 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
149–238（90 aa）
Fragment：UNP P42212 residues 2-238, UNP P0DP29 residues 148-305
Chain A
2–144（143 aa）
Fragment：UNP P42212 residues 2-238, UNP P0DP29 residues 148-305
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 4 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.00 Å R-free 0.190 |
| 3EVU Crystal structure of Calcium bound dimeric GCAMP2 Deposited 2008-10-13 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
147–238（92 aa）
Fragment：UNP P11799 residues 1731-1749, UNP P42212 residues 2-144/147-238, UNP P0DP29 residues 3-238
Chain A
2–144（143 aa）
Fragment：UNP P11799 residues 1731-1749, UNP P42212 residues 2-144/147-238, UNP P0DP29 residues 3-238
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 8 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.75 Å R-free 0.197 |
| 3EVV Crystal Structure of Calcium bound dimeric GCAMP2 (#2) Deposited 2008-10-13 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
149–238（90 aa）
Chain A
2–144（143 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 8 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.60 Å R-free 0.270 |
| 3G9A Green fluorescent protein bound to minimizer nanobody Deposited 2009-02-13 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
1–238（238 aa）
|
Mutation：S2G, Q80R, F99S, M153T, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 6.5；293 K；100mM Mes pH 6.5, 30% PEG 8000, 15% Glycerol, VAPOR DIFFUSION, temperature 293K
|
Resolution 1.61 Å R-free 0.194 |
| 3GEX 1.6 angstrom crystal structure of fluorescent protein Cypet Deposited 2009-02-26 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：T10G, V12I, D20E, A88V, I168A, E173T, L195I Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；293 K；30% PEG 4000, 0.1M Tris-HCl pH 8.5, 0.2M Lithium sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.60 Å R-free 0.229 |
| 3GJ1 Non photoactivated state of PA-GFP Deposited 2009-03-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–230（230 aa）
|
Mutation：Q80R, F99S, M153T, V163A, T203H Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；298 K；1.7 M Ammonium sulfate, 0.1 M Tris-HCl, 0.2 M Lithium sulfate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.80 Å R-free 0.252 |
| 3GJ1 Non photoactivated state of PA-GFP Deposited 2009-03-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–230（230 aa）
|
Mutation：Q80R, F99S, M153T, V163A, T203H Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 1 CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；298 K；1.7 M Ammonium sulfate, 0.1 M Tris-HCl, 0.2 M Lithium sulfate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.80 Å R-free 0.252 |
| 3GJ1 Non photoactivated state of PA-GFP Deposited 2009-03-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
1–230（230 aa）
|
Mutation：Q80R, F99S, M153T, V163A, T203H Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；298 K；1.7 M Ammonium sulfate, 0.1 M Tris-HCl, 0.2 M Lithium sulfate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.80 Å R-free 0.252 |
| 3GJ1 Non photoactivated state of PA-GFP Deposited 2009-03-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain D
1–230（230 aa）
|
Mutation：Q80R, F99S, M153T, V163A, T203H Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 2 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；298 K；1.7 M Ammonium sulfate, 0.1 M Tris-HCl, 0.2 M Lithium sulfate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.80 Å R-free 0.252 |
| 3GJ2 Photoactivated state of PA-GFP Deposited 2009-03-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–230（230 aa）
|
Mutation：Q80R, F99S, M153T, V163A, T203H Non-standard monomer：Yes (specific site not provided by mmCIF) | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；298 K；18% PEG 3550, 0.1 M Tris-HCl, 0.2 M Calcium acetate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å R-free 0.248 |
| 3GJ2 Photoactivated state of PA-GFP Deposited 2009-03-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–230（230 aa）
|
Mutation：Q80R, F99S, M153T, V163A, T203H Non-standard monomer：Yes (specific site not provided by mmCIF) | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；298 K；18% PEG 3550, 0.1 M Tris-HCl, 0.2 M Calcium acetate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å R-free 0.248 |
| 3GJ2 Photoactivated state of PA-GFP Deposited 2009-03-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
1–230（230 aa）
|
Mutation：Q80R, F99S, M153T, V163A, T203H Non-standard monomer：Yes (specific site not provided by mmCIF) | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；298 K；18% PEG 3550, 0.1 M Tris-HCl, 0.2 M Calcium acetate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å R-free 0.248 |
| 3GJ2 Photoactivated state of PA-GFP Deposited 2009-03-07 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 4 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain D
1–230（230 aa）
|
Mutation：Q80R, F99S, M153T, V163A, T203H Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；298 K；18% PEG 3550, 0.1 M Tris-HCl, 0.2 M Calcium acetate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å R-free 0.248 |
| 3I19 1.4 Angstrom Crystal Structure of Fluorescent Protein Cypet Deposited 2009-06-25 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：T9G, V11I, D19E, A87V, I167A, E172T, L194I Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；293 K；30% PEG 4000, 0.1M Tris-HCl pH 8.5, 0.2M Li2SO4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.36 Å R-free 0.197 |
| 3K1K Green fluorescent protein bound to enhancer nanobody Deposited 2009-09-28 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
1–238（238 aa）
|
Mutation：S2G, Q80R, F99S, M153T, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；293 K；60% MPD, 100MM NAAC PH 4.6, 10MM CACL2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.15 Å R-free 0.255 |
| 3K1K Green fluorescent protein bound to enhancer nanobody Deposited 2009-09-28 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
1–238（238 aa）
|
Mutation：S2G, Q80R, F99S, M153T, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；293 K；60% MPD, 100MM NAAC PH 4.6, 10MM CACL2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.15 Å R-free 0.255 |
| 3LA1 High resolution crystal structure of CyPet mutant A167I Deposited 2010-01-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：T9G, V11I, D19E, A87V, A167I, E172T, L194I Non-standard monomer：Yes (specific site not provided by mmCIF) | NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；293 K；30% PEG 4000, 0.1M TRIS-HCL PH 8.5, 0.2M LI2SO4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.29 Å R-free 0.159 |
| 3O77 The structure of Ca2+ Sensor (Case-16) Deposited 2010-07-30 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
147–238（92 aa）
Chain A
2–146（145 aa）
|
Mutation：POINT MUTATIONS Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：POINT MUTATIONS Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 2 SO4 SULFATE ION × 2 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.4；293 K；Reservoir: 50mM Imidazol, 1.9M Na2malonate pH 6.4; Protein stock solution: 50mM Tris HCl (pH 7.4), 150mM NaCl, 10mM dithiothreitol, protein 4.1mg/ml; Drop ratio reservoir/protein = 1/3, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.35 Å R-free 0.274 |
| 3O78 The structure of Ca2+ Sensor (Case-12) Deposited 2010-07-30 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
147–238（92 aa）
Chain A
2–146（145 aa）
|
Mutation：POINT MUTATIONS Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：POINT MUTATIONS Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.5；293 K；Reservoir: 100mM Tris HCL (pH 5.5), 100mM (NH4)2SO4, 21% PEG 3350; Protein stock: 7.6 mg/ml Protein, 50mM Tris HCl (pH 7.4), 150mM NaCl; Seed stock solution: 20mM CaCl2, 20% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.60 Å R-free 0.316 |
| 3O78 The structure of Ca2+ Sensor (Case-12) Deposited 2010-07-30 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
147–238（92 aa）
Chain B
2–146（145 aa）
|
Mutation：POINT MUTATIONS Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：POINT MUTATIONS Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.5；293 K；Reservoir: 100mM Tris HCL (pH 5.5), 100mM (NH4)2SO4, 21% PEG 3350; Protein stock: 7.6 mg/ml Protein, 50mM Tris HCl (pH 7.4), 150mM NaCl; Seed stock solution: 20mM CaCl2, 20% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.60 Å R-free 0.316 |
| 3O78 The structure of Ca2+ Sensor (Case-12) Deposited 2010-07-30 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
147–238（92 aa）
Chain A
2–146（145 aa）
Chain B
147–238（92 aa）
Chain B
2–146（145 aa）
|
Mutation：POINT MUTATIONS Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：POINT MUTATIONS Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：POINT MUTATIONS Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：POINT MUTATIONS Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 8 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.5；293 K；Reservoir: 100mM Tris HCL (pH 5.5), 100mM (NH4)2SO4, 21% PEG 3350; Protein stock: 7.6 mg/ml Protein, 50mM Tris HCl (pH 7.4), 150mM NaCl; Seed stock solution: 20mM CaCl2, 20% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.60 Å R-free 0.316 |
| 3OGO Structure of the GFP:GFP-nanobody complex at 2.8 A resolution in spacegroup P21212 Deposited 2010-08-17 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | IPA ISOPROPYL ALCOHOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 5.6；293 K；20% PEG 4000, 20% isopropanol, 0.1M trisodium citrate dihydrate, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.80 Å R-free 0.253 |
| 3OGO Structure of the GFP:GFP-nanobody complex at 2.8 A resolution in spacegroup P21212 Deposited 2010-08-17 | Different construct Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 5.6；293 K；20% PEG 4000, 20% isopropanol, 0.1M trisodium citrate dihydrate, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.80 Å R-free 0.253 |
| 3OGO Structure of the GFP:GFP-nanobody complex at 2.8 A resolution in spacegroup P21212 Deposited 2010-08-17 | Different construct Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain C
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 5.6；293 K；20% PEG 4000, 20% isopropanol, 0.1M trisodium citrate dihydrate, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.80 Å R-free 0.253 |
| 3OGO Structure of the GFP:GFP-nanobody complex at 2.8 A resolution in spacegroup P21212 Deposited 2010-08-17 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain D
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | IPA ISOPROPYL ALCOHOL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 5.6；293 K；20% PEG 4000, 20% isopropanol, 0.1M trisodium citrate dihydrate, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.80 Å R-free 0.253 |
| 3OSQ Maltose-bound maltose sensor engineered by insertion of circularly permuted green fluorescent protein into E. coli maltose binding protein at position 175 Deposited 2010-09-09 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
147–238（92 aa）
Fragment：GFP P42212 residues 2-146, 147-238, MBP P0AEX9 residues 27-199, 201-396
Chain A
2–146（145 aa）
Fragment：GFP P42212 residues 2-146, 147-238, MBP P0AEX9 residues 27-199, 201-396
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.6；296 K；0.5 M Ammonium sulfate, 0.1M Sodium citrate tribasic dihydrate pH 5.6, 1.0 M Lithium sulfate monohydrate, VAPOR DIFFUSION, HANGING DROP, temperature 296K
|
Resolution 1.90 Å R-free 0.199 |
| 3OSR Maltose-bound maltose sensor engineered by insertion of circularly permuted green fluorescent protein into E. coli maltose binding protein at position 311 Deposited 2010-09-09 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
147–238（92 aa）
Fragment：GFP P42212 residues 2-146, 147-238, MBP P0AEX9 residues 27-199, 201-396
Chain A
2–146（145 aa）
Fragment：GFP P42212 residues 2-146, 147-238, MBP P0AEX9 residues 27-199, 201-396
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 4.6；296 K；0.1 M Sodium acetate pH 4.6, 8% w/v polyethylene glycol 4000, VAPOR DIFFUSION, temperature 296K
|
Resolution 2.00 Å R-free 0.226 |
| 3OSR Maltose-bound maltose sensor engineered by insertion of circularly permuted green fluorescent protein into E. coli maltose binding protein at position 311 Deposited 2010-09-09 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
147–238（92 aa）
Fragment：GFP P42212 residues 2-146, 147-238, MBP P0AEX9 residues 27-199, 201-396
Chain B
2–146（145 aa）
Fragment：GFP P42212 residues 2-146, 147-238, MBP P0AEX9 residues 27-199, 201-396
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 4.6；296 K；0.1 M Sodium acetate pH 4.6, 8% w/v polyethylene glycol 4000, VAPOR DIFFUSION, temperature 296K
|
Resolution 2.00 Å R-free 0.226 |
| 3P28 Structure of a Circular Permutant of Green Fluorescent Protein Deposited 2010-10-01 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
50–229（180 aa）
Fragment：UNP P42212 residues 50-229, 2-49
Chain A
3–49（47 aa）
Fragment：UNP P42212 residues 50-229, 2-49
|
Mutation：Q80R, F99S, M153T, V163A, A206K Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：Q80R, F99S, M153T, V163A, A206K Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；279 K；0.07 M Na-acetate trihydrate pH 4.6, 5.6% PEG 4000, and 30 % Glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 279K
|
Resolution 1.80 Å R-free 0.237 |
| 3SG2 Crystal Structure of GCaMP2-T116V,D381Y Deposited 2011-06-14 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
149–238（90 aa）
Fragment：SEE REMARK 999
Chain A
2–144（143 aa）
Fragment：SEE REMARK 999
|
Mutation：T116V,D381Y Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：T116V,D381Y Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.5；293 K；0.2 M ammonium acetate, 0.1 M Tris, pH 8.5, 25% PEG3350, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.00 Å R-free 0.207 |
| 3SG3 Crystal Structure of GCaMP3-D380Y Deposited 2011-06-14 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
149–238（90 aa）
Fragment：SEE REMARK 999
Chain A
2–144（143 aa）
Fragment：SEE REMARK 999
|
Mutation：D380Y Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：D380Y Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.5；293 K；0.2 M sodium chloride, 0.1 M Tris, pH 8.5, 25% PEG3350, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.10 Å R-free 0.199 |
| 3SG4 Crystal Structure of GCaMP3-D380Y, LP(linker 2) Deposited 2011-06-14 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
149–238（90 aa）
Fragment：SEE REMARK 999
Chain A
2–144（143 aa）
Fragment：SEE REMARK 999
|
Mutation：D380Y, LP(linker 2) Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：D380Y, LP(linker 2) Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.5；293 K；0.2 M sodium chloride, 0.1 M Tris, pH 8.5, 25% PEG3350, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.40 Å R-free 0.213 |
| 3SG5 Crystal Structure of Dimeric GCaMP3-D380Y, QP(linker 1), LP(linker 2) Deposited 2011-06-14 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
149–238（90 aa）
Fragment：SEE REMARK 999
Chain A
2–144（143 aa）
Fragment：SEE REMARK 999
|
Mutation：D380Y, QP(linker 1), LP(linker 2) Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：D380Y, QP(linker 1), LP(linker 2) Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 8 SO4 SULFATE ION × 8 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6.5；293 K；0.1 M Bis-Tris, pH 6.5, 2 M ammonium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.90 Å R-free 0.226 |
| 3SG6 Crystal Structure of Dimeric GCaMP2-LIA(linker 1) Deposited 2011-06-14 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
149–238（90 aa）
Fragment：SEE REMARK 999
Chain A
2–144（143 aa）
Fragment：SEE REMARK 999
|
Mutation：LIA(linker 1) Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：LIA(linker 1) Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 8 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.5；293 K；0.2 M lithium sulfate, 0.1 M Tris, pH 8.5, 30% PEG4000, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.70 Å R-free 0.249 |
| 3SG7 Crystal Structure of GCaMP3-KF(linker 1) Deposited 2011-06-14 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
149–238（90 aa）
Fragment：SEE REMARK 999
Chain A
2–144（143 aa）
Fragment：SEE REMARK 999
|
Mutation：KF(linker 1) Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：KF(linker 1) Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.5；293 K；0.2 M ammonium sulfate, 0.1 M Tris, pH 8.5, 25% PEG3350, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 1.90 Å R-free 0.230 |
| 3SRY Engineered high-affinity halide-binding protein derived from YFP: halide-free Deposited 2011-07-07 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：S72A, K79R, Q183A, T203Y, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.6；290 K；17% PEG3000, 150 mM sodium acetate, 90 mM magnesium chloride, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 1.16 Å R-free 0.157 |
| 3SS0 Engineered high-affinity halide-binding protein derived from YFP: fluoride complex Deposited 2011-07-07 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：S72A, K79R, Q183A, T203Y, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.6；290 K；17% PEG3000, 100 mM sodium acetate, 90 mM magnesium chloride, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 1.49 Å R-free 0.192 |
| 3SSH Engineered high-affinity halide-binding protein derived from YFP: chloride complex Deposited 2011-07-08 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：S72A, K79R, Q183A, T203Y, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.6；290 K；17% PEG3000, 100 mM sodium acetate, 90 mM magnesium chloride, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 1.28 Å R-free 0.160 |
| 3SSK Engineered high-affinity halide-binding protein derived from YFP: bromide complex Deposited 2011-07-08 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：S72A, K79R, Q183A, T203Y, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | BR BROMIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.6；290 K；17% PEG2000, 150 mM sodium acetate, 90 mM magnesium chloride, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 1.36 Å R-free 0.172 |
| 3SSL Engineered high-affinity halide-binding protein derived from YFP: iodide complex Deposited 2011-07-08 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：S72A, K79R, Q183A, T203Y, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | IOD IODIDE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.6；290 K；17% PEG2000, 150 mM sodium acetate, 90 mM magnesium chloride, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 1.45 Å R-free 0.176 |
| 3SSP Engineered low-affinity halide-binding protein derived from YFP: halide-free Deposited 2011-07-08 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：S72A, K79R, T203Y, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.6；290 K；14% PEG4000, 50 mM sodium acetate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 1.63 Å R-free 0.174 |
| 3SST Engineered low-affinity halide-binding protein derived from YFP: chloride complex Deposited 2011-07-08 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：S72A, K79R, T203Y, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.6；290 K；14% PEG4000, 50 mM sodium acetate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 1.40 Å R-free 0.182 |
| 3SSV Engineered low-affinity halide-binding protein derived from YFP: fluoride complex Deposited 2011-07-08 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：S72A, K79R, T203Y, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | F FLUORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.6；290 K；18% PEG2000, 50 mM sodium acetate, 90 mM magnesium chloride, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 1.86 Å R-free 0.213 |
| 3SSY Engineered low-affinity halide-binding protein derived from YFP: iodide complex Deposited 2011-07-08 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：S72A, K79R, T203Y, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | IOD IODIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.6；290 K；22% PEG2000, 50 mM sodium acetate, 90 mM magnesium chloride, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 1.77 Å R-free 0.194 |
| 3ST0 Engineered medium-affinity halide-binding protein derived from YFP: halide-free Deposited 2011-07-08 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：Q69T, S72A, K79R, V163A, T203Y, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | EDO 1,2-ETHANEDIOL × 1 FMT FORMIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.4；290 K；10% PEG3000, 150 mM ammonium acetate, pH 5.4, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 1.19 Å R-free 0.166 |
| 3SV5 Engineered medium-affinity halide-binding protein derived from YFP: iodide complex Deposited 2011-07-12 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：Q69T, S72A, K79R, V163A, T203Y, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | EDO 1,2-ETHANEDIOL × 1 IOD IODIDE ION × 4 FMT FORMIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；290 K；21% PEG2000, 50 mM sodium acetate, 90 mM magnesium chloride, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 1.53 Å R-free 0.182 |
| 3SVB Engineered medium-affinity halide-binding protein derived from YFP: fluoride complex Deposited 2011-07-12 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：Q69T, S72A, K79R, V163A, T203Y, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.4；290 K；10% PEG3000, 150 mM ammonium acetate, pH 5.4, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 1.30 Å R-free 0.164 |
| 3SVC Engineered medium-affinity halide-binding protein derived from YFP: chloride complex Deposited 2011-07-12 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：Q69T, S72A, K79R, V163A, T203Y, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | EDO 1,2-ETHANEDIOL × 1 CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；290 K；20% PEG2000, 50 mM sodium acetate, 90 mM magnesium chloride, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 1.31 Å R-free 0.164 |
| 3SVD Engineered medium-affinity halide-binding protein derived from YFP: bromide complex Deposited 2011-07-12 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：Q69T, S72A, K79R, V163A, T203Y, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | EDO 1,2-ETHANEDIOL × 1 BR BROMIDE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；290 K；21% PEG2000, 50 mM sodium acetate, 90 mM magnesium chloride, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 1.78 Å R-free 0.196 |
| 3SVE Engineered low-affinity halide-binding protein derived from YFP: bromide complex Deposited 2011-07-12 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：S72A, K79R, T203Y, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | BR BROMIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.6；290 K；18% PEG2000, 50 mM sodium acetate, 90 mM magnesium chloride, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 1.49 Å R-free 0.179 |
| 3U8P Cytochrome b562 integral fusion with EGFP Deposited 2011-10-17 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–38（37 aa）
Chain A
40–238（199 aa）
|
Mutation：F64L Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：F64L Non-standard monomer：Yes (specific site not provided by mmCIF) | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 6.4；0.1 M MES/NAOH, PH 6.4, 200 MM magnesium acetate and 20% (W/V) PEG 8000; for cryoprotection 16% glycerol was added to the reservoir buffer, VAPOR DIFFUSION
|
Resolution 2.75 Å R-free 0.242 |
| 3U8P Cytochrome b562 integral fusion with EGFP Deposited 2011-10-17 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
2–38（37 aa）
Chain B
40–238（199 aa）
|
Mutation：F64L Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：F64L Non-standard monomer：Yes (specific site not provided by mmCIF) | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 6.4；0.1 M MES/NAOH, PH 6.4, 200 MM magnesium acetate and 20% (W/V) PEG 8000; for cryoprotection 16% glycerol was added to the reservoir buffer, VAPOR DIFFUSION
|
Resolution 2.75 Å R-free 0.242 |
| 3U8P Cytochrome b562 integral fusion with EGFP Deposited 2011-10-17 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
2–38（37 aa）
Chain C
40–238（199 aa）
|
Mutation：F64L Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：F64L Non-standard monomer：Yes (specific site not provided by mmCIF) | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 6.4；0.1 M MES/NAOH, PH 6.4, 200 MM magnesium acetate and 20% (W/V) PEG 8000; for cryoprotection 16% glycerol was added to the reservoir buffer, VAPOR DIFFUSION
|
Resolution 2.75 Å R-free 0.242 |
| 3UFZ Crystal structure of a Trp-less green fluorescent protein translated by the universal genetic code Deposited 2011-11-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–229（228 aa）
Fragment：UNP RESIDUES 2-229
|
Mutation：T9A, W57F, Q80R, F99S, M153T, V163A, T200C, S205T, A206V Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.5；293 K；15% PEG 6000, 5% Glycerol, pH 8.5, vapor diffusion, sitting drop, temperature 293K
|
Resolution 1.85 Å R-free 0.228 |
| 3UG0 Crystal structure of a Trp-less green fluorescent protein translated by the simplified genetic code Deposited 2011-11-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–229（228 aa）
Fragment：UNP RESIDUES 2-229
|
Mutation：T9A, W57F, Q80R, F99S, M153T, V163A, T200C, S205T, A206V Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6.5；293 K；17% PEG 20000, 100mM MES (pH6.5), vapor diffusion, sitting drop, temperature 293K
|
Resolution 2.09 Å R-free 0.241 |
| 3V3D Crystal Structure of an eYFP single mutant Deposited 2011-12-13 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：V68L, S72A, Y203F, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；289 K；2M (NH4)2SO4, 0.1M Tris-HCl pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
|
Resolution 1.95 Å R-free 0.229 |
| 3W1C Structure of a pressure sensitive YFP variant YFP-G1 Deposited 2012-11-14 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S65G, V68L, S72A, T204Y, H232L Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6.5；277 K；13-15% PEG 8000, 0.1M Bis-Tris buffer, 350-400mM calcium acetate , pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
|
Resolution 1.30 Å R-free 0.211 |
| 3W1D Structure of a pressure sensitive YFP variant YFP-G3 Deposited 2012-11-14 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S65G, V68L, S72A, T206Y, H234L Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6.5；277 K；13-17% PEG 8000, 0.1M Bis-Tris buffer, 200-400mM calcium acetate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
|
Resolution 1.50 Å R-free 0.208 |
| 3WLC Crystal structure of dimeric GCaMP6m Deposited 2013-11-08 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
149–238（90 aa）
Fragment：UNP RESIDUES 37-55, 149-238, 2-144, 3-149
Chain A
2–144（143 aa）
Fragment：UNP RESIDUES 37-55, 149-238, 2-144, 3-149
|
Mutation：M153K, V163A, S175G, D180Y, T203V, A206K, H231L, F64L, V93I, N61D, D79Y, M77G, K78S, T80R, S82T, R91G Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：M153K, V163A, S175G, D180Y, T203V, A206K, H231L, F64L, V93I, N61D, D79Y, M77G, K78S, T80R, S82T, R91G Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 8 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；293 K；0.1M HEPES, 20% w/v PEG 3350, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.49 Å R-free 0.225 |
| 3WLD Crystal structure of monomeric GCaMP6m Deposited 2013-11-08 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
149–238（90 aa）
Fragment：UNP RESIDUES 37-55, 149-238, 2-144, 3-149
Chain A
2–144（143 aa）
Fragment：UNP RESIDUES 37-55, 149-238, 2-144, 3-149
|
Mutation：M153K, V163A, S175G, D180Y, T203V, A206K, H231L, F64L, V93I, N61D, D79Y, M77G, K78S, T80R, S82T, R91G Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：M153K, V163A, S175G, D180Y, T203V, A206K, H231L, F64L, V93I, N61D, D79Y, M77G, K78S, T80R, S82T, R91G Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.4；293 K；0.1M HEPES, 18% w/v PEG 3350, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.70 Å R-free 0.212 |
| 3ZTF X-ray Structure of the Cyan Fluorescent Protein mTurquoise2 (K206A mutant) Deposited 2011-07-07 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
Fragment：RESIDUES 2-238
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.25；30 MG/ML PROTEIN, 19% PEG 8000, 100 MM MGCL2, 100 MM HEPES PH 7.25 .
|
Resolution 1.31 Å R-free 0.177 |
| 4ANJ MYOSIN VI (MDinsert2-GFP fusion) PRE-POWERSTROKE STATE (MG.ADP.AlF4) Deposited 2012-03-19 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
2–238（237 aa）
Fragment：MYOSIN-6 RESIDUES 1-817, GFP RESIDUES 2-238
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | ADP ADENOSINE-5'-DIPHOSPHATE × 1 MG MAGNESIUM ION × 1 ALF TETRAFLUOROALUMINATE ION × 1 CA CALCIUM ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
5% PEG 8000, 50 MM MES PH 5.5, 100 MM NH4SO4, 20 MM MGCL2, 20 MM NACL AND 3 % PROPAN-2-OL
|
Resolution 2.60 Å R-free 0.288 |
| 4AR7 X-ray structure of the cyan fluorescent protein mTurquoise Deposited 2012-04-21 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5；6 MG/ML PROTEIN, 15% PEG8000, 100 MM MGCL2, 100 MM HEPES PH 6.50
|
Resolution 1.23 Å R-free 0.166 |
| 4AS8 X-ray structure of the cyan fluorescent protein Cerulean cryoprotected with ethylene glycol Deposited 2012-04-29 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | EDO 1,2-ETHANEDIOL × 11 MG MAGNESIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.25；13 MG/ML PROTEIN, 14% PEG8000, 100 MM MGCL2, 100 MM HEPES PH 7.25
|
Resolution 1.02 Å R-free 0.132 |
| 4B5Y X-ray structure of the cyan fluorescent protein mTurquoise-GL (K206A mutant) in space group C222(1) Deposited 2012-08-08 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5；35 MG/ML PROTEIN, 14% PEG8000, 100 MM MGCL2, 100 MM HEPES PH 6.50
|
Resolution 1.45 Å R-free 0.179 |
| 4BDU Bax BH3-in-Groove dimer (GFP) Deposited 2012-10-08 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 4 PDB declaration: tetrameric |
Chain A
1–230（230 aa）
Fragment：BAX RESIDUES 53-128
Chain B
1–230（230 aa）
Fragment：BAX RESIDUES 53-128
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
10% PEG3350, 20% MPD, 0.5% CHAPS, 0.1 M TRIS PH 8.0
|
Resolution 3.00 Å R-free 0.246 |
| 4BDU Bax BH3-in-Groove dimer (GFP) Deposited 2012-10-08 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Insufficient information Homooligomer；Protein × 4 PDB declaration: tetrameric |
Chain C
1–230（230 aa）
Fragment：BAX RESIDUES 53-128
Chain D
1–230（230 aa）
Fragment：BAX RESIDUES 53-128
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
10% PEG3350, 20% MPD, 0.5% CHAPS, 0.1 M TRIS PH 8.0
|
Resolution 3.00 Å R-free 0.246 |
| 4EN1 The 1.62A structure of a FRET-optimized Cerulean Fluorescent Protein Deposited 2012-04-12 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | GOL GLYCEROL × 6 PEG DI(HYDROXYETHYL)ETHER × 2 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7；298 K；mother liquor consisting of 0.08 M sodium acetate trihydrate, 0.16 M ammonium sulfate, 9% (w/v) PEG4000, and 19% (v/v) glycerol. Hanging drops contained 2 uL protein solution and 1 uL mother liquor, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.62 Å R-free 0.205 |
| 4EN1 The 1.62A structure of a FRET-optimized Cerulean Fluorescent Protein Deposited 2012-04-12 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | GOL GLYCEROL × 4 PEG DI(HYDROXYETHYL)ETHER × 1 SO4 SULFATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.7；298 K；mother liquor consisting of 0.08 M sodium acetate trihydrate, 0.16 M ammonium sulfate, 9% (w/v) PEG4000, and 19% (v/v) glycerol. Hanging drops contained 2 uL protein solution and 1 uL mother liquor, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.62 Å R-free 0.205 |
| 4EUL Crystal structure of enhanced Green Fluorescent Protein to 1.35A resolution reveals alternative conformations for Glu222 Deposited 2012-04-25 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：F64L, S65T Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 2 PEG DI(HYDROXYETHYL)ETHER × 4 SO4 SULFATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6.5；277 K；0.1 M MES pH 6.5, 200 mM calcium acetate, 20% (w/v) PEG8000, 13% PEG200 for cryoprotection, VAPOR DIFFUSION, SITTING DROP, temperature 277K
|
Resolution 1.35 Å R-free 0.169 |
| 4GES crystal structure of GFP-TYR151PYZ with an unnatural amino acid incorporation Deposited 2012-08-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–238（238 aa）
|
Mutation：P99S, M153T, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 8.9；289 K；60~100mg/ml protein sample in 50 mM Hepes, pH 7.5, reservior solution:16~19% PEG 3000, 100mM Tris pH 8.9,0.2M calcium acetate, VAPOR DIFFUSION, temperature 289K
|
Resolution 1.23 Å R-free 0.188 |
| 4GF6 crystal structure of GFP with cuprum bound at the Incorporated metal Chelating Amino Acid PYZ151 Deposited 2012-08-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
4–238（235 aa）
|
Mutation：P99S, M153T, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) | CU COPPER (II) ION × 1 CA CALCIUM ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 8.9；289 K；60~100mg/ml protein sample in 50 mM Hepes, pH 7.5, reservior solution:17~19% PEG 3000, 100mM Tris pH 8.9,0.2M calcium acetate , VAPOR DIFFUSION, temperature 289K
|
Resolution 1.10 Å R-free 0.179 |
| 4H47 1.9 angstrom CyPet structure at pH5.2 Deposited 2012-09-17 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：T9G, V11I, D19E, A87V, I167A, E172T, L194I Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 1 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.2；293 K；30% PEG 4000, 0.1M Sodium Acetate, 0.2M Lithium sulfate, pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.90 Å R-free 0.243 |
| 4H48 1.45 angstrom CyPet Structure at pH7.0 Deposited 2012-09-17 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：T9G, V11I, D19E, A87V, I167A, E172T, L194I Non-standard monomer：Yes (specific site not provided by mmCIF) | TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；293 K；30% PEG 4000, 0.1M Tris-HCl, 0.2M Lithium sulfate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.45 Å R-free 0.211 |
| 4IK1 High resolution structure of GCaMPJ at pH 8.5 Deposited 2012-12-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
149–238（90 aa）
Chain A
2–144（143 aa）
|
Mutation：M153K, V163A, S175G, D180Y, T203V, A206K, H231L, F64L, V93I, I354T, D362Y Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：M153K, V163A, S175G, D180Y, T203V, A206K, H231L, F64L, V93I, I354T, D362Y Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；289 K；Tris pH 8.5, (NH4)2SO4, 25% PEG 3350, 0.5% DDAO, VAPOR DIFFUSION, HANGING DROP, temperature 289K
|
Resolution 2.00 Å R-free 0.205 |
| 4IK3 High resolution structure of GCaMP3 at pH 8.5 Deposited 2012-12-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
149–238（90 aa）
Chain A
2–144（143 aa）
|
Mutation：M153K, V163A, S175G, D180Y, T203V, A206K, H231L, F64L, V93I, I354T Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：M153K, V163A, S175G, D180Y, T203V, A206K, H231L, F64L, V93I, I354T Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 8 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；289 K；Tris pH 8.5, (NH4)2SO4, 23% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 289K
|
Resolution 2.01 Å R-free 0.214 |
| 4IK4 High resolution structure of GCaMP3 at pH 5.0 Deposited 2012-12-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
149–238（90 aa）
Chain A
2–144（143 aa）
|
Mutation：M153K, V163A, S175G, D180Y, T203V, A206K, H231L, F64L, V93I, I354T Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：M153K, V163A, S175G, D180Y, T203V, A206K, H231L, F64L, V93I, I354T Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 8 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；289 K；Bis-Tris pH 5.0, (NH4)2SO4 and 25% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 289K
|
Resolution 2.01 Å R-free 0.212 |
| 4IK5 High resolution structure of Delta-REST-GCaMP3 Deposited 2012-12-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
149–238（90 aa）
Chain A
2–144（143 aa）
|
Mutation：M153K, V163A, S175G, D180Y, T203V, A206K, H231L, F64L, V93I, I354T Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：M153K, V163A, S175G, D180Y, T203V, A206K, H231L, F64L, V93I, I354T Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；289 K；Tris pH 8.5, NH4OAc, 23% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 289K
|
Resolution 2.50 Å R-free 0.228 |
| 4IK8 High resolution structure of GCaMP3 dimer form 1 at pH 7.5 Deposited 2012-12-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
149–238（90 aa）
Chain A
2–144（143 aa）
|
Mutation：M153K, V163A, S175G, D180Y, T203V, A206K, H231L, F64L, V93I, I354T Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：M153K, V163A, S175G, D180Y, T203V, A206K, H231L, F64L, V93I, I354T Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 8 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；289 K；HEPES pH 7.5, (NH4)2SO4, 25% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 289K
|
Resolution 1.55 Å R-free 0.209 |
| 4IK9 High resolution structure of GCaMP3 dimer form 2 at pH 7.5 Deposited 2012-12-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
149–238（90 aa）
Chain A
2–144（143 aa）
|
Mutation：M153K, V163A, S175G, D180Y, T203V, A206K, H231L, F64L, V93I, I354T Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：M153K, V163A, S175G, D180Y, T203V, A206K, H231L, F64L, V93I, I354T Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 8 PEG DI(HYDROXYETHYL)ETHER × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；289 K；HEPES pH 7.5, (NH4)2SO4, 21% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 289K
|
Resolution 1.80 Å R-free 0.195 |
| 4J88 Dark-state structure of sfGFP containing the unnatural amino acid p-azido-phenylalanine at residue 66 Deposited 2013-02-14 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S30R, Y39N, Q80R, F99S, N105T, F145Y, M153T, V163A, A171V, A206V Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 4 EDO 1,2-ETHANEDIOL × 19 TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.3；278 K；10 mg/mL protein and 100 mM Tris-HCl, pH 8.3, 2.8 M (NH4)2SO4 (200+200 nanoL drop against 60 microL reservoir), VAPOR DIFFUSION, SITTING DROP, temperature 278K
|
Resolution 2.08 Å R-free 0.228 |
| 4J88 Dark-state structure of sfGFP containing the unnatural amino acid p-azido-phenylalanine at residue 66 Deposited 2013-02-14 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
2–238（237 aa）
|
Mutation：S30R, Y39N, Q80R, F99S, N105T, F145Y, M153T, V163A, A171V, A206V Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 5 EDO 1,2-ETHANEDIOL × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.3；278 K；10 mg/mL protein and 100 mM Tris-HCl, pH 8.3, 2.8 M (NH4)2SO4 (200+200 nanoL drop against 60 microL reservoir), VAPOR DIFFUSION, SITTING DROP, temperature 278K
|
Resolution 2.08 Å R-free 0.228 |
| 4J89 Different photochemical events of a genetically encoded aryl azide define and modulate GFP fluorescence Deposited 2013-02-14 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S30R, Y39N, Q80R, F99S, N105T, F145Y, M153T, V163A, A171V, A206V Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 2 EDO 1,2-ETHANEDIOL × 13 TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.5；283 K；20 mg/mL protein and 100 mM Tris-HCl, 2.4 M (NH4)2SO4, 1+1 microL drop against 85 microL reservoir, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 283K
|
Resolution 2.10 Å R-free 0.242 |
| 4J89 Different photochemical events of a genetically encoded aryl azide define and modulate GFP fluorescence Deposited 2013-02-14 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
2–238（237 aa）
|
Mutation：S30R, Y39N, Q80R, F99S, N105T, F145Y, M153T, V163A, A171V, A206V Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 3 EDO 1,2-ETHANEDIOL × 10 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.5；283 K；20 mg/mL protein and 100 mM Tris-HCl, 2.4 M (NH4)2SO4, 1+1 microL drop against 85 microL reservoir, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 283K
|
Resolution 2.10 Å R-free 0.242 |
| 4J8A Irradiated-state structure of sfGFP containing the unnatural amino acid p-azido-phenylalanine at residue 145 Deposited 2013-02-14 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S30R, Y39N, Q80R, F99S, N105T, F145(HOX), M153T, V163A, A171V, A206V Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 6 EDO 1,2-ETHANEDIOL × 30 TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.3；278 K；10 mg/mL protein and 100 mM Tris-HCl, pH 8.3, 2 M (NH4)2SO4, 200+200 nanoL drop against 60 microL reservoir, VAPOR DIFFUSION, SITTING DROP, temperature 278K
|
Resolution 1.26 Å R-free 0.165 |
| 4JFG Crystal structure of sfGFP-66-HqAla Deposited 2013-02-28 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–238（238 aa）
Chain B
1–238（238 aa）
|
Mutation：S30R, Y39N, Q80R, F99S, N105T, Y145F, M153T, V163A, I171V, A206V Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：S30R, Y39N, Q80R, F99S, N105T, Y145F, M153T, V163A, I171V, A206V Non-standard monomer：Yes (specific site not provided by mmCIF) | HQY quinolin-8-ol × 2 CS CESIUM ION × 10 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；298 K；15-20% polyethylene glycol (PEG) 3350, 0.13-0.18M CsCl, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
|
Resolution 3.00 Å R-free 0.312 |
| 4JFG Crystal structure of sfGFP-66-HqAla Deposited 2013-02-28 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain C
1–238（238 aa）
Chain D
1–238（238 aa）
|
Mutation：S30R, Y39N, Q80R, F99S, N105T, Y145F, M153T, V163A, I171V, A206V Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：S30R, Y39N, Q80R, F99S, N105T, Y145F, M153T, V163A, I171V, A206V Non-standard monomer：Yes (specific site not provided by mmCIF) | HQY quinolin-8-ol × 2 CS CESIUM ION × 7 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；298 K；15-20% polyethylene glycol (PEG) 3350, 0.13-0.18M CsCl, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
|
Resolution 3.00 Å R-free 0.312 |
| 4JFG Crystal structure of sfGFP-66-HqAla Deposited 2013-02-28 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain E
1–238（238 aa）
Chain G
1–238（238 aa）
|
Mutation：S30R, Y39N, Q80R, F99S, N105T, Y145F, M153T, V163A, I171V, A206V Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：S30R, Y39N, Q80R, F99S, N105T, Y145F, M153T, V163A, I171V, A206V Non-standard monomer：Yes (specific site not provided by mmCIF) | HQY quinolin-8-ol × 2 CS CESIUM ION × 7 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；298 K；15-20% polyethylene glycol (PEG) 3350, 0.13-0.18M CsCl, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
|
Resolution 3.00 Å R-free 0.312 |
| 4JFG Crystal structure of sfGFP-66-HqAla Deposited 2013-02-28 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain F
1–238（238 aa）
Chain H
1–238（238 aa）
|
Mutation：S30R, Y39N, Q80R, F99S, N105T, Y145F, M153T, V163A, I171V, A206V Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：S30R, Y39N, Q80R, F99S, N105T, Y145F, M153T, V163A, I171V, A206V Non-standard monomer：Yes (specific site not provided by mmCIF) | HQY quinolin-8-ol × 2 CS CESIUM ION × 7 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；298 K；15-20% polyethylene glycol (PEG) 3350, 0.13-0.18M CsCl, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
|
Resolution 3.00 Å R-free 0.312 |
| 4JRB Structure of Cockroach Allergen Bla g 1 Tandem Repeat as a EGFP fusion Deposited 2013-03-21 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–229（229 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | CL CHLORIDE ION × 2 PGT (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE × 1 D12 DODECANE × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；277 K；100mM Tris, 10% propanol, 20% PEG4K, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
|
Resolution 2.41 Å R-free 0.246 |
| 4KA9 Crystal structure analysis of single amino acid deletion mutations in EGFP Deposited 2013-04-22 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：F64L, S65T Non-standard monomer：Yes (specific site not provided by mmCIF) | EDO 1,2-ETHANEDIOL × 9 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 NA SODIUM ION × 2 ZN ZINC ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 7；291 K；0.1 M HEPES, 0.01 M ZnCl2, 20% (w/v) PEG 6000, pH 7.0, vapor diffusion, temperature 291K
|
Resolution 1.58 Å R-free 0.210 |
| 4KAG Crystal structure analysis of a single amino acid deletion mutation in EGFP Deposited 2013-04-22 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：F64L, S65T, D190delta Non-standard monomer：Yes (specific site not provided by mmCIF) | EDO 1,2-ETHANEDIOL × 16 SO4 SULFATE ION × 2 TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 6.5；291 K；0.1 M Na cacodylate, 0.2 M NaCl, 1M Na citrate, pH 6.5, VAPOR DIFFUSION, temperature 291K
|
Resolution 1.12 Å R-free 0.161 |
| 4KEX Crystal structure analysis of a single amino acid deletion mutation in EGFP Deposited 2013-04-26 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：F64L, S65T, A227delta Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 4；291 K；0.1 M MMT Buffer (Malic acid, MES and Tris), 25% (w/v) PEG 1500, pH 4.0, VAPOR DIFFUSION, temperature 291K
|
Resolution 1.60 Å R-free 0.209 |
| 4KW4 Crystal Structure of Green Fluorescent Protein Deposited 2013-05-23 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S147H, S202H, Q204H, A206K Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
hanging drop；pH 8.2；294 K；50 mM HEPES pH 8.2, 50 mM MgCl2, 22% PEG4000, hanging drop, temperature 294K
|
Resolution 1.75 Å R-free 0.204 |
| 4KW8 Crystal Structure of Green Fluorescent Protein Deposited 2013-05-23 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S147H, S202H, Q204H, A206K Non-standard monomer：Yes (specific site not provided by mmCIF) | NI NICKEL (II) ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
hanging drop；pH 8.2；294 K；50 mM HEPES pH 8.2, 50 mM MgCl2, 22% PEG4000, hanging drop, temperature 294K
|
Resolution 2.46 Å R-free 0.225 |
| 4KW9 Crystal Structure of Green Fluorescent Protein Deposited 2013-05-23 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S147H, S202H, Q204H, A206K Non-standard monomer：Yes (specific site not provided by mmCIF) | ZN ZINC ION × 5 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
hanging drop；pH 8.2；294 K；50 mM HEPES pH 8.2, 50 mM MgCl2, 22% PEG4000, hanging drop, temperature 294K
|
Resolution 1.80 Å R-free 0.210 |
| 4L12 Crystal structure of EGFP-based Calcium Sensor CatchER complexed with Gd Deposited 2013-06-01 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–230（229 aa）
Fragment：SEE REMARK 999
|
Mutation：F64L, S65T, S147E, M153T, V163A, S202D, Q204E, F223E, T225E Non-standard monomer：Yes (specific site not provided by mmCIF) | GD GADOLINIUM ATOM × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；298 K；51 mM HEPES, pH 7.0, 1 mM beta-mercaptoethanol, 50 mM sodium acetate, 17% PEG4000, 2 mM gadolinium chloride, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.78 Å R-free 0.220 |
| 4L13 Crystal structure of Ligand Free EGFP-based Calcium Sensor CatchER Deposited 2013-06-01 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–230（229 aa）
Fragment：SEE REMARK 999
|
Mutation：F64L, S65T, S147E, M153T, V163A, S202D, Q204E, F223E, T225E Non-standard monomer：Yes (specific site not provided by mmCIF) | ACY ACETIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；298 K；51 mM HEPES, pH 7.0, 1 mM beta-mercaptoethanol, 50 mM sodium acetate, 17% PEG4000, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.66 Å R-free 0.203 |
| 4L1I Crystal structure of EGFP-based Calcium Sensor CatchER complexed with Ca Deposited 2013-06-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–230（229 aa）
Fragment：SEE REMARK 999
|
Mutation：F64L, S65T, S147E, M153T, V163A, S202D, Q204E, F223E, T225E Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；298 K；0.9 mM protein, 53 mM HEPES, pH 7.0, 1 mM beta-mercaptoethanol, 50 mM sodium acetate, 16% PEG3350, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.20 Å R-free 0.191 |
| 4LQT 1.10A resolution crystal structure of a superfolder green fluorescent protein (W57A) mutant Deposited 2013-07-19 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S30R, Y39N, W57A, F99S, N105T, Y145F, M153T, V163A, I171V Non-standard monomer：Yes (specific site not provided by mmCIF) | EDO 1,2-ETHANEDIOL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 6.5；293 K；40% (v/v) Isopropanol, 0.1 M Imidazole acid, 15% (w/v) PEG 8000, pH 6.5, vapor diffusion, temperature 293K
|
Resolution 1.10 Å R-free 0.146 |
| 4LQU 1.60A resolution crystal structure of a superfolder green fluorescent protein (W57G) mutant Deposited 2013-07-19 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S30R, Y39N, W57G, F99S, N105T, Y145F, M153T, V163A, I171V Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 5.5；293 K；25% (v/v) PEG 3350, 0.1 M bis-tris, pH 5.5, vapor diffusion, temperature 293K
|
Resolution 1.60 Å R-free 0.182 |
| 4LQU 1.60A resolution crystal structure of a superfolder green fluorescent protein (W57G) mutant Deposited 2013-07-19 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
2–238（237 aa）
|
Mutation：S30R, Y39N, W57G, F99S, N105T, Y145F, M153T, V163A, I171V Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 5.5；293 K；25% (v/v) PEG 3350, 0.1 M bis-tris, pH 5.5, vapor diffusion, temperature 293K
|
Resolution 1.60 Å R-free 0.182 |
| 4LQU 1.60A resolution crystal structure of a superfolder green fluorescent protein (W57G) mutant Deposited 2013-07-19 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
2–238（237 aa）
|
Mutation：S30R, Y39N, W57G, F99S, N105T, Y145F, M153T, V163A, I171V Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 5.5；293 K；25% (v/v) PEG 3350, 0.1 M bis-tris, pH 5.5, vapor diffusion, temperature 293K
|
Resolution 1.60 Å R-free 0.182 |
| 4LQU 1.60A resolution crystal structure of a superfolder green fluorescent protein (W57G) mutant Deposited 2013-07-19 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 4 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain D
2–238（237 aa）
|
Mutation：S30R, Y39N, W57G, F99S, N105T, Y145F, M153T, V163A, I171V Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 5.5；293 K；25% (v/v) PEG 3350, 0.1 M bis-tris, pH 5.5, vapor diffusion, temperature 293K
|
Resolution 1.60 Å R-free 0.182 |
| 4LW5 Crystal structure of all-trans green fluorescent protein Deposited 2013-07-26 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
Fragment：SEE REMARK 999
|
Mutation：yes Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；295 K；0.1 M sodium chloride, 0.1 M HEPES, pH 7.5, 20% w/v PEG8000, VAPOR DIFFUSION, SITTING DROP, temperature 295K
|
Resolution 2.55 Å R-free 0.281 |
| 4LW5 Crystal structure of all-trans green fluorescent protein Deposited 2013-07-26 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
2–238（237 aa）
Fragment：SEE REMARK 999
|
Mutation：yes Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；295 K；0.1 M sodium chloride, 0.1 M HEPES, pH 7.5, 20% w/v PEG8000, VAPOR DIFFUSION, SITTING DROP, temperature 295K
|
Resolution 2.55 Å R-free 0.281 |
| 4LW5 Crystal structure of all-trans green fluorescent protein Deposited 2013-07-26 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
2–238（237 aa）
Fragment：SEE REMARK 999
|
Mutation：yes Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；295 K；0.1 M sodium chloride, 0.1 M HEPES, pH 7.5, 20% w/v PEG8000, VAPOR DIFFUSION, SITTING DROP, temperature 295K
|
Resolution 2.55 Å R-free 0.281 |
| 4LW5 Crystal structure of all-trans green fluorescent protein Deposited 2013-07-26 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 4 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain D
2–238（237 aa）
Fragment：SEE REMARK 999
|
Mutation：yes Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；295 K；0.1 M sodium chloride, 0.1 M HEPES, pH 7.5, 20% w/v PEG8000, VAPOR DIFFUSION, SITTING DROP, temperature 295K
|
Resolution 2.55 Å R-free 0.281 |
| 4LW5 Crystal structure of all-trans green fluorescent protein Deposited 2013-07-26 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 5 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain E
2–238（237 aa）
Fragment：SEE REMARK 999
|
Mutation：yes Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；295 K；0.1 M sodium chloride, 0.1 M HEPES, pH 7.5, 20% w/v PEG8000, VAPOR DIFFUSION, SITTING DROP, temperature 295K
|
Resolution 2.55 Å R-free 0.281 |
| 4N3D Crystal structure of the dimeric variant EGFP-K162Q in P61 space group Deposited 2013-10-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–232（232 aa）
|
Mutation：K162Q, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | PO4 PHOSPHATE ION × 2 K POTASSIUM ION × 3 GOL GLYCEROL × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；Two microliters of protein 10mg/ml in buffer 20 Tris 8.0 100 NaCl mixed with equal amount of resevoir solution - 0.056 NaH2PO4, 1.344 M K2HPO4 pH 8.2, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 1.34 Å R-free 0.194 |
| 4N3D Crystal structure of the dimeric variant EGFP-K162Q in P61 space group Deposited 2013-10-07 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–232（232 aa）
|
Mutation：K162Q, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；Two microliters of protein 10mg/ml in buffer 20 Tris 8.0 100 NaCl mixed with equal amount of resevoir solution - 0.056 NaH2PO4, 1.344 M K2HPO4 pH 8.2, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 1.34 Å R-free 0.194 |
| 4OGS Crystal structure of GFP S205A/T203V at 2.2 A resolution Deposited 2014-01-16 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：S205A, T203V Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.8；298 K；Crystals were produced using 1 uL protein (26 mg/ml in 0.1 M imidazole, pH 7.8) mixed with 1 uL well solution, Crystallization screens varied from 22% to 32% (w:v) polyethylene glycol monomethyl ether (PEG) 2000 and 0.05M to 0.2M KBr at room temperature, for a range of pH values near neutrality, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.21 Å R-free 0.306 |
| 4OGS Crystal structure of GFP S205A/T203V at 2.2 A resolution Deposited 2014-01-16 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–238（238 aa）
|
Mutation：S205A, T203V Non-standard monomer：Yes (specific site not provided by mmCIF) | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.8；298 K；Crystals were produced using 1 uL protein (26 mg/ml in 0.1 M imidazole, pH 7.8) mixed with 1 uL well solution, Crystallization screens varied from 22% to 32% (w:v) polyethylene glycol monomethyl ether (PEG) 2000 and 0.05M to 0.2M KBr at room temperature, for a range of pH values near neutrality, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.21 Å R-free 0.306 |
| 4ORN Blue Fluorescent Protein mKalama1 Deposited 2014-02-11 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：several Non-standard monomer：Yes (specific site not provided by mmCIF) | MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID × 2 SO4 SULFATE ION × 3 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.5；294 K；1.8 M ammonium sulfate, 0.01 M cobalt chloride, 0.1 M MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K
|
Resolution 1.71 Å R-free 0.183 |
| 4ORN Blue Fluorescent Protein mKalama1 Deposited 2014-02-11 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
2–238（237 aa）
|
Mutation：several Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 3 CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.5；294 K；1.8 M ammonium sulfate, 0.01 M cobalt chloride, 0.1 M MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K
|
Resolution 1.71 Å R-free 0.183 |
| 4P1Q GREEN FLUORESCENT PROTEIN E222H VARIANT Deposited 2014-02-27 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–231（229 aa）
|
Mutation：E222H Non-standard monomer：Yes (specific site not provided by mmCIF) | NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；291 K；Na-acetate, PEG 3350
|
Resolution 1.50 Å R-free 0.172 |
| 4P7H Structure of Human beta-Cardiac Myosin Motor Domain::GFP chimera Deposited 2014-03-27 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
5–238（234 aa）
Fragment：UNP P12883 residues 1-787,UNP P42212 residues 5-238
|
Mutation：Q80R, K101N, V163A, I167T, S175G, D190N Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；293 K；10% Tacsimate, pH 6.0, 10% glycerol, 14-15% PEG 3350, 0.2 mM MgCL2, and 5 mM TCEP
|
Resolution 3.20 Å R-free 0.284 |
| 4P7H Structure of Human beta-Cardiac Myosin Motor Domain::GFP chimera Deposited 2014-03-27 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
5–238（234 aa）
Fragment：UNP P12883 residues 1-787,UNP P42212 residues 5-238
|
Mutation：Q80R, K101N, V163A, I167T, S175G, D190N Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；293 K；10% Tacsimate, pH 6.0, 10% glycerol, 14-15% PEG 3350, 0.2 mM MgCL2, and 5 mM TCEP
|
Resolution 3.20 Å R-free 0.284 |
| 4PA0 Omecamtiv Mercarbil binding site on the Human Beta-Cardiac Myosin Motor Domain Deposited 2014-04-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
5–234（230 aa）
Fragment：UNP P12883 residues 1-787, UNP P42212 residues 5-234
|
Mutation：Q80R, V163A, I167T, S175G, D190N Non-standard monomer：Yes (specific site not provided by mmCIF) | 2OW methyl 4-(2-fluoro-3-{[(6-methylpyridin-3-yl)carbamoyl]amino}benzyl)piperazine-1-carboxylate × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；295 K；Tacsimate, pH 6.0, PEG 3350, glycerol, MgCL2, TCEP and ligand, omecamptiv mercarbil
|
Resolution 2.25 Å R-free 0.246 |
| 4PA0 Omecamtiv Mercarbil binding site on the Human Beta-Cardiac Myosin Motor Domain Deposited 2014-04-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
5–234（230 aa）
Fragment：UNP P12883 residues 1-787, UNP P42212 residues 5-234
|
Mutation：Q80R, V163A, I167T, S175G, D190N Non-standard monomer：Yes (specific site not provided by mmCIF) | 2OW methyl 4-(2-fluoro-3-{[(6-methylpyridin-3-yl)carbamoyl]amino}benzyl)piperazine-1-carboxylate × 1 GOL GLYCEROL × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；295 K；Tacsimate, pH 6.0, PEG 3350, glycerol, MgCL2, TCEP and ligand, omecamptiv mercarbil
|
Resolution 2.25 Å R-free 0.246 |
| 4PFE Crystal structure of vsfGFP-0 Deposited 2014-04-29 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
2–229（228 aa）
Chain B
2–229（228 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；291 K；0.1M Sodium acetate pH 4.6 30 %(v/v) PEG 400, 20mM Hepes pH 7.5, 150mM NaCl
|
Resolution 2.60 Å R-free 0.255 |
| 4U2V Bak BH3-in-Groove dimer (GFP) Deposited 2014-07-18 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain B
1–230（230 aa）
Fragment：UNP P42212 residues 1-230, UNP Q16611 residues 68-148
Chain C
1–230（230 aa）
Fragment：UNP P42212 residues 1-230, UNP Q16611 residues 68-148
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | CAC CACODYLATE ION × 1 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；281 K；4.5% PEG 8000, 40% MPD, 100 mM tri-sodium citrate, 90 mM cacodylate acid pH 6.5 and 1% Octyl glucoside
|
Resolution 2.30 Å R-free 0.250 |
| 4U2V Bak BH3-in-Groove dimer (GFP) Deposited 2014-07-18 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–230（230 aa）
Fragment：UNP P42212 residues 1-230, UNP Q16611 residues 68-148
Chain D
1–230（230 aa）
Fragment：UNP P42212 residues 1-230, UNP Q16611 residues 68-148
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | CAC CACODYLATE ION × 5 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；281 K；4.5% PEG 8000, 40% MPD, 100 mM tri-sodium citrate, 90 mM cacodylate acid pH 6.5 and 1% Octyl glucoside
|
Resolution 2.30 Å R-free 0.250 |
| 4XBI Structure Of A Malarial Protein Involved in Proteostasis Deposited 2014-12-17 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–230（229 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；277 K；2 M ammonium sulphate
100 mM Hepes pH=7
protein at 13-15 mg/ml
|
Resolution 2.01 Å R-free 0.202 |
| 4XBI Structure Of A Malarial Protein Involved in Proteostasis Deposited 2014-12-17 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
2–230（229 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；277 K；2 M ammonium sulphate
100 mM Hepes pH=7
protein at 13-15 mg/ml
|
Resolution 2.01 Å R-free 0.202 |
| 4XGY GFP based antibody (fluorobody) Deposited 2015-01-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–173（172 aa）
Chain A
174–238（65 aa）
|
Mutation：R30S,N39Y,L64F,R80Q,S99F,T105N,F145Y,T153M,A163V,V219A Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：R30S,N39Y,L64F,R80Q,S99F,T105N,F145Y,T153M,A163V,V219A Non-standard monomer：Yes (specific site not provided by mmCIF) | PE5 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；291 K；40% PEG400, 0.1M Hepes, pH 7.0
|
Resolution 1.49 Å R-free 0.167 |
| 4XL5 X-ray structure of bGFP-A / EGFP complex Deposited 2015-01-13 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；0.05M MgAc, 0.1M NaAc, 5%-15% PEG 8K
|
Resolution 2.00 Å R-free 0.268 |
| 4XOV Structure of rsGreen0.7 in the green-off-state Deposited 2015-01-16 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.4；289 K；0.15 M NaBr, 30% PEG 2000 MME
|
Resolution 1.20 Å R-free 0.168 |
| 4XOW Structure of rsGreen0.7 in the green-on-state Deposited 2015-01-16 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.4；289 K；0.1 M Tris pH 8.5, 25% PEG 3350
|
Resolution 1.25 Å R-free 0.165 |
| 4XVP X-ray structure of bGFP-C / EGFP complex Deposited 2015-01-27 | Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
2–238（237 aa）
|
Mutation：F64L, S65T, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6.9；293 K；50 mM tricine pH 6.9, 25% PEG4K
|
Resolution 3.40 Å R-free 0.292 |
| 4XVP X-ray structure of bGFP-C / EGFP complex Deposited 2015-01-27 | Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
2–238（237 aa）
|
Mutation：F64L, S65T, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6.9；293 K；50 mM tricine pH 6.9, 25% PEG4K
|
Resolution 3.40 Å R-free 0.292 |
| 4XVP X-ray structure of bGFP-C / EGFP complex Deposited 2015-01-27 | Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain C
2–238（237 aa）
|
Mutation：F64L, S65T, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6.9；293 K；50 mM tricine pH 6.9, 25% PEG4K
|
Resolution 3.40 Å R-free 0.292 |
| 4Z4K Crystal structure of GFP-TAX1BP1 UBZ1+2 domain fusion protein Deposited 2015-04-02 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–230（230 aa）
Fragment：UBZ1 and UBZ2
Chain B
1–230（230 aa）
Fragment：UBZ1 and UBZ2
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | ZN ZINC ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；293 K；0.2 M Lithium sulfate monohydrate, 0.1 M Tris pH 8.5, 25% w/v PEG 3350.
|
Resolution 2.80 Å R-free 0.280 |
| 4Z4M Crystal structure of GFP-TAX1BP1 UBZ2 domain fusion protein Deposited 2015-04-02 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–230（230 aa）
Fragment：UBZ2
Chain B
1–230（230 aa）
Fragment：UBZ2
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | ZN ZINC ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 7.4；293 K；0.2 M Ammonium fluoride, 20% w/v Polyethylene glycol 3,350
|
Resolution 2.15 Å R-free 0.298 |
| 4ZF3 Crystal structure of Green Fluorescent Protein (GFP); S65T, H148D; circular permutant ( 50-51) Deposited 2015-04-21 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
51–237（187 aa）
Chain A
4–50（47 aa）
|
Mutation：S30R, Y39I, C48S, F64L, S65T, Q80R, F99S, N105K, E111V, I128Y, Y145F, H148D, M153T, K156N, V163A, K166T, I167V, I171V, S205T, A206V Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：S30R, Y39I, C48S, F64L, S65T, Q80R, F99S, N105K, E111V, I128Y, Y145F, H148D, M153T, K156N, V163A, K166T, I167V, I171V, S205T, A206V Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；298 K；50 mM sodium acetate, 100 mM NaCl, 5% (wt/vol) PEG 3550
|
Resolution 1.90 Å R-free 0.261 |
| 4ZF3 Crystal structure of Green Fluorescent Protein (GFP); S65T, H148D; circular permutant ( 50-51) Deposited 2015-04-21 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
51–237（187 aa）
Chain B
4–50（47 aa）
|
Mutation：S30R, Y39I, C48S, F64L, S65T, Q80R, F99S, N105K, E111V, I128Y, Y145F, H148D, M153T, K156N, V163A, K166T, I167V, I171V, S205T, A206V Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：S30R, Y39I, C48S, F64L, S65T, Q80R, F99S, N105K, E111V, I128Y, Y145F, H148D, M153T, K156N, V163A, K166T, I167V, I171V, S205T, A206V Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；298 K；50 mM sodium acetate, 100 mM NaCl, 5% (wt/vol) PEG 3550
|
Resolution 1.90 Å R-free 0.261 |
| 4ZF4 Crystal structure of Green Fluorescent Protein (GFP); S65T, Y66(Cl1Y), H148D; circular permutant (50-51) Deposited 2015-04-21 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
51–237（187 aa）
Chain A
4–50（47 aa）
|
Mutation：S30R, Y39I, C48S, F64L, S65T, Q80R, F99S, N105K, E111V, I128T, Y145F, H148D, M153T, V163A, K166T, I167V, I171V, S205T, A206V Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：S30R, Y39I, C48S, F64L, S65T, Q80R, F99S, N105K, E111V, I128T, Y145F, H148D, M153T, V163A, K166T, I167V, I171V, S205T, A206V Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；298 K；50 mM sodium acetate, 100 mM NaCl, 15% (wt/vol) PEG 3550
|
Resolution 1.82 Å R-free 0.246 |
| 4ZF4 Crystal structure of Green Fluorescent Protein (GFP); S65T, Y66(Cl1Y), H148D; circular permutant (50-51) Deposited 2015-04-21 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
51–237（187 aa）
Chain B
4–50（47 aa）
|
Mutation：S30R, Y39I, C48S, F64L, S65T, Q80R, F99S, N105K, E111V, I128T, Y145F, H148D, M153T, V163A, K166T, I167V, I171V, S205T, A206V Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：S30R, Y39I, C48S, F64L, S65T, Q80R, F99S, N105K, E111V, I128T, Y145F, H148D, M153T, V163A, K166T, I167V, I171V, S205T, A206V Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；298 K；50 mM sodium acetate, 100 mM NaCl, 15% (wt/vol) PEG 3550
|
Resolution 1.82 Å R-free 0.246 |
| 4ZF5 Crystal structure of Green Fluorescent Protein (GFP); S65T, Y66(Cl2Y), H148D; circular permutant ( 50-51) Deposited 2015-04-21 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
51–237（187 aa）
Chain A
4–50（47 aa）
|
Mutation：S30R, Y39I, C48S, F64L, S65T, Q80R, F99S, N105K, E111V, I128T, Y145F, H148D, M153T, V163A, K166T, I167V, I171V, S205T, A206V Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：S30R, Y39I, C48S, F64L, S65T, Q80R, F99S, N105K, E111V, I128T, Y145F, H148D, M153T, V163A, K166T, I167V, I171V, S205T, A206V Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；298 K；50 mM sodium acetate, 100 mM NaCl, 5% (wt/vol) PEG 3550
|
Resolution 1.70 Å R-free 0.232 |
| 4ZF5 Crystal structure of Green Fluorescent Protein (GFP); S65T, Y66(Cl2Y), H148D; circular permutant ( 50-51) Deposited 2015-04-21 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
51–237（187 aa）
Chain B
4–50（47 aa）
|
Mutation：S30R, Y39I, C48S, F64L, S65T, Q80R, F99S, N105K, E111V, I128T, Y145F, H148D, M153T, V163A, K166T, I167V, I171V, S205T, A206V Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：S30R, Y39I, C48S, F64L, S65T, Q80R, F99S, N105K, E111V, I128T, Y145F, H148D, M153T, V163A, K166T, I167V, I171V, S205T, A206V Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；298 K；50 mM sodium acetate, 100 mM NaCl, 5% (wt/vol) PEG 3550
|
Resolution 1.70 Å R-free 0.232 |
| 5AQB DARPin-based Crystallization Chaperones exploit Molecular Geometry as a Screening Dimension in Protein Crystallography Deposited 2015-09-21 | Different construct Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
2–231（230 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.5；PEG3350 20.0% W/V, SODIUM FORMATE 0.2 M, BIS TRIS PROPANE 0.1 M, PH 8
|
Resolution 1.37 Å R-free 0.177 |
| 5BKF Cyro-EM structure of human Glycine Receptor alpha2-beta heteromer, Glycine bound, desensitized state Deposited 2021-03-19 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 5 PDB declaration: pentameric |
Chain E
2–238（237 aa）
|
Mutation：four substitutions in the GFP portion | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 9 GLY GLYCINE × 5 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.60 Å |
| 5BKG Cyro-EM structure of human Glycine Receptor alpha2-beta heteromer, glycine bound, (semi)open state Deposited 2021-03-19 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 5 PDB declaration: pentameric |
Chain E
2–238（237 aa）
|
Mutation：four substitutions in the GFP | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 9 GLY GLYCINE × 3 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.80 Å |
| 5DTX Crystal structure of rsEGFP2 in the fluorescent on-state Deposited 2015-09-18 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.1；293 K；0.1 M HEPES, 1.7 M ammonium sulphate
|
Resolution 1.45 Å R-free 0.206 |
| 5DTY Crystal structure of rsEGFP2 in the non-fluorescent off-state Deposited 2015-09-18 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.1；293 K；0.1 M HEPES, 1.7 M ammonium sulphate
|
Resolution 1.50 Å R-free 0.224 |
| 5DTZ Crystal structure of rsFolder in the fluorescent on-state Deposited 2015-09-18 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；293 K；0.1 M Tris, 20% PEG3350
|
Resolution 1.50 Å R-free 0.202 |
| 5DTZ Crystal structure of rsFolder in the fluorescent on-state Deposited 2015-09-18 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；293 K；0.1 M Tris, 20% PEG3350
|
Resolution 1.50 Å R-free 0.202 |
| 5DTZ Crystal structure of rsFolder in the fluorescent on-state Deposited 2015-09-18 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | PEG DI(HYDROXYETHYL)ETHER × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；293 K；0.1 M Tris, 20% PEG3350
|
Resolution 1.50 Å R-free 0.202 |
| 5DTZ Crystal structure of rsFolder in the fluorescent on-state Deposited 2015-09-18 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain D
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | PEG DI(HYDROXYETHYL)ETHER × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；293 K；0.1 M Tris, 20% PEG3350
|
Resolution 1.50 Å R-free 0.202 |
| 5DU0 Crystal structure of rsFolder in the non-fluorescent off-state Deposited 2015-09-18 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；293 K；0.1 M Tris, 20% PEG3350
|
Resolution 2.35 Å R-free 0.257 |
| 5DU0 Crystal structure of rsFolder in the non-fluorescent off-state Deposited 2015-09-18 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；293 K；0.1 M Tris, 20% PEG3350
|
Resolution 2.35 Å R-free 0.257 |
| 5DU0 Crystal structure of rsFolder in the non-fluorescent off-state Deposited 2015-09-18 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；293 K；0.1 M Tris, 20% PEG3350
|
Resolution 2.35 Å R-free 0.257 |
| 5DU0 Crystal structure of rsFolder in the non-fluorescent off-state Deposited 2015-09-18 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 4 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain D
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；293 K；0.1 M Tris, 20% PEG3350
|
Resolution 2.35 Å R-free 0.257 |
| 5F9G pnGFP1.5-Y.Cro: circularly permuted green fluorescent protein (with a tyrosine-derived chromophore) Deposited 2015-12-09 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
145–238（94 aa）
Fragment：UNP residues 145-238, UNP residues 2-144
Chain A
2–144（143 aa）
Fragment：UNP residues 145-238, UNP residues 2-144
|
Mutation：circular permutation,circular permutation Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：circular permutation,circular permutation Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；295 K；pnGFP1.5-Y.Cro in buffer 50mM Hepes pH 7.5, 0.3M NaCl, 1mM beta-mercaptoethanol, A280=52; Crystals were grown in drops of 1ul protein solution: 1ul well solution containing 20-22% PEG 3350, 0.25M potassium thiocyanate, 0.1M Tris pH 8.0
|
Resolution 2.77 Å R-free 0.295 |
| 5FGU Structure of Sda1 nuclease apoprotein as an EGFP fixed-arm fusion Deposited 2015-12-21 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–229（229 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 6 EDO 1,2-ETHANEDIOL × 4 ACT ACETATE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；277 K；Crystals were grown by mixing 0.25uL of protein (13.3mg/mL) with 0.25uL mother liquor (45mM Na cacodylate pH 6, 13.5mM magnesium sulfate, 1.53M ammonium sulfate), using sitting drop vapor diffusion
|
Resolution 1.90 Å R-free 0.201 |
| 5FGU Structure of Sda1 nuclease apoprotein as an EGFP fixed-arm fusion Deposited 2015-12-21 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–229（229 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 12 EDO 1,2-ETHANEDIOL × 8 ACT ACETATE ION × 8 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；277 K；Crystals were grown by mixing 0.25uL of protein (13.3mg/mL) with 0.25uL mother liquor (45mM Na cacodylate pH 6, 13.5mM magnesium sulfate, 1.53M ammonium sulfate), using sitting drop vapor diffusion
|
Resolution 1.90 Å R-free 0.201 |
| 5FJI Three-dimensional structures of two heavily N-glycosylated Aspergillus sp. Family GH3 beta-D-glucosidases Deposited 2015-10-09 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
20–863（844 aa）
Fragment：MATURE PEPTIDE COMPRISING RESIDUES 20-863
Chain B
20–863（844 aa）
Fragment：MATURE PEPTIDE COMPRISING RESIDUES 20-863
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 EDO 1,2-ETHANEDIOL × 39 IMD IMIDAZOLE × 7 |
X-RAY DIFFRACTION
X-ray crystallization conditions
0.1M MIB (PACT SCREEN BUFFER)PH 5.0, 21 % PEG 1500, 25 % ETHYLENE GLYCOL
|
Resolution 1.95 Å R-free 0.174 |
| 5HBD Filamentous Assembly of Green Fluorescent Protein Supported by a C-terminal fusion of 18-residues, viewed in space group C2 Deposited 2015-12-31 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 7 PDB declaration: heptameric |
Chain A
1–238（238 aa）
|
Mutation：S65A, V68L Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；298 K；0.1M sodium citrate, 10% MPD, 0.1M HEPES, pH 7.5
|
Resolution 1.65 Å R-free 0.205 |
| 5HGE Filamentous Assembly of Green Fluorescent Protein Supported by a C-terminal fusion of 18-residues, viewed in space group P212121 Deposited 2016-01-08 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 6 PDB declaration: The biological unit is a filament with 2 sub 1 screw symmetry. One filament is composed of chain A and the following symmetry operators 1/2+X,1/2-Y,-Z; -1+X,Y,Z; -1/2+X,1/2-Y,-Z; 1+X,Y,Z; 3/2+X,1/2-Y,-Z; 2+X,Y,Z; etc. |
Chain A
1–238（238 aa）
|
Mutation：S65A, V68L and S72A Non-standard monomer：Yes (specific site not provided by mmCIF) | MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；298 K；30% MPD, 20% ethanol, 20 mM HEPES, pH 7.5, 10 mM NaCl
|
Resolution 1.86 Å R-free 0.211 |
| 5HW9 Filamentous Assembly of Green Fluorescent Protein Supported by a C-terminal fusion of 18-residues, viewed in space group P21 Deposited 2016-01-29 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 5 PDB declaration: pentameric |
Chain A
1–238（238 aa）
|
Mutation：S65A, V68L, S72A Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.5；298 K；10% 1,6-hexanediol, sodium cacodylate pH 6.5, 5 mM magnesium chloride, 200 mM KCl
|
Resolution 3.00 Å R-free 0.232 |
| 5HZO GFP mutant S205G Deposited 2016-02-02 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–235（235 aa）
Fragment：UNP residues 1-235
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | MLT D-MALATE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.9；295 K；1.0 M malate, pH 8.0, Tris, 0.3 M NaCl, 1% n-nonyl-beta-D maltoside
|
Resolution 2.49 Å R-free 0.276 |
| 5HZO GFP mutant S205G Deposited 2016-02-02 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–235（235 aa）
Fragment：UNP residues 1-235
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | MLT D-MALATE × 1 UMQ UNDECYL-MALTOSIDE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.9；295 K；1.0 M malate, pH 8.0, Tris, 0.3 M NaCl, 1% n-nonyl-beta-D maltoside
|
Resolution 2.49 Å R-free 0.276 |
| 5J2O Crystal structure of the cyan fluorescence protein Cerulean S175G mutant Deposited 2016-03-29 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：F65L/Y145A/N146I/H148D/M153T/V163A/S175G/H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；291 K；16% PEG 8000, 0.1M MGCL2, 0.1M HEPES PH 7.5
|
Resolution 1.50 Å R-free 0.188 |
| 5J3N C-terminal domain of EcoR124I HsdR subunit fused with the pH-sensitive GFP variant ratiometric pHluorin Deposited 2016-03-31 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
2–238（237 aa）
Fragment：UNP Residues 2-238, 887-1038
Chain B
2–238（237 aa）
Fragment：UNP Residues 2-238, 887-1038
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8；277 K；20% (w/v) PEG 3350, 0.2 M KH2PO4, 4% v/v acetone
|
Resolution 2.45 Å R-free 0.254 |
| 5J3N C-terminal domain of EcoR124I HsdR subunit fused with the pH-sensitive GFP variant ratiometric pHluorin Deposited 2016-03-31 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Insufficient information Homooligomer；Protein × 4 PDB declaration: tetrameric |
Chain A
2–238（237 aa）
Fragment：UNP Residues 2-238, 887-1038
Chain B
2–238（237 aa）
Fragment：UNP Residues 2-238, 887-1038
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8；277 K；20% (w/v) PEG 3350, 0.2 M KH2PO4, 4% v/v acetone
|
Resolution 2.45 Å R-free 0.254 |
| 5KTG Crystal structure of mouse Bak BH3-in-groove homodimer (GFP) Deposited 2016-07-11 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 4 PDB declaration: tetrameric |
Chain A
1–230（230 aa）
Fragment：GFP, GS linker, BAK (UNP residues 66-144)
Chain B
1–230（230 aa）
Fragment：GFP, GS linker, BAK (UNP residues 66-144)
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；7-12% PEG3350, 20% MPD, 100 mM Tris, pH 7.0-8.5, 0.5% CHAPS
|
Resolution 2.80 Å R-free 0.275 |
| 5KTG Crystal structure of mouse Bak BH3-in-groove homodimer (GFP) Deposited 2016-07-11 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–230（230 aa）
Fragment：GFP, GS linker, BAK (UNP residues 66-144)
Chain B
1–230（230 aa）
Fragment：GFP, GS linker, BAK (UNP residues 66-144)
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；7-12% PEG3350, 20% MPD, 100 mM Tris, pH 7.0-8.5, 0.5% CHAPS
|
Resolution 2.80 Å R-free 0.275 |
| 5LEL Crystal structure of DARPin-DARPin rigid fusion, variant DD_Off7_10_3G124 in complex with Maltose-binding Protein and Green Fluorescent Protein Deposited 2016-06-30 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8；293 K；PEG3350 23.2% w/v, Sodium acetate 0.2 M, Bis-Tris propane 0.1 M, pH 8.0
|
Resolution 3.10 Å R-free 0.306 |
| 5LEL Crystal structure of DARPin-DARPin rigid fusion, variant DD_Off7_10_3G124 in complex with Maltose-binding Protein and Green Fluorescent Protein Deposited 2016-06-30 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain F
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8；293 K；PEG3350 23.2% w/v, Sodium acetate 0.2 M, Bis-Tris propane 0.1 M, pH 8.0
|
Resolution 3.10 Å R-free 0.306 |
| 5LEL Crystal structure of DARPin-DARPin rigid fusion, variant DD_Off7_10_3G124 in complex with Maltose-binding Protein and Green Fluorescent Protein Deposited 2016-06-30 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain I
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8；293 K；PEG3350 23.2% w/v, Sodium acetate 0.2 M, Bis-Tris propane 0.1 M, pH 8.0
|
Resolution 3.10 Å R-free 0.306 |
| 5LEM Crystal structure of DARPin-DARPin rigid fusion, variant DD_Off7_11_3G124 in complex with Maltose-binding Protein and Green Fluorescent Protein Deposited 2016-06-30 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 9；293 K；PEG6000 20% w/v, TAPS 0.02 M, pH 9.0
|
Resolution 2.98 Å R-free 0.295 |
| 5MA3 GFP-binding DARPin fusion gc_R11 Deposited 2016-11-03 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | EDO 1,2-ETHANEDIOL × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；277 K；0.2 M Sodium Acetate, 0.1 M Sodium Cacodylate pH 6.5, 30% w/v PEG 8000
|
Resolution 1.70 Å R-free 0.192 |
| 5MA5 GFP-binding DARPin fusion gc_K11 Deposited 2016-11-03 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | EDO 1,2-ETHANEDIOL × 1 CIT CITRIC ACID × 2 IPA ISOPROPYL ALCOHOL × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；277 K；0.1M tri Sodium citrate pH 5.6, 20% v/v 2-Propanol, 20%w/v PEG 4000
|
Resolution 1.85 Å R-free 0.184 |
| 5MA5 GFP-binding DARPin fusion gc_K11 Deposited 2016-11-03 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain D
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | EDO 1,2-ETHANEDIOL × 2 CIT CITRIC ACID × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；277 K；0.1M tri Sodium citrate pH 5.6, 20% v/v 2-Propanol, 20%w/v PEG 4000
|
Resolution 1.85 Å R-free 0.184 |
| 5MA6 GFP-binding DARPin 3G124nc Deposited 2016-11-03 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | PO4 PHOSPHATE ION × 5 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；277 K；0.1M Na-Acetate pH 5.5, 0.5M KH2PO4
|
Resolution 2.30 Å R-free 0.241 |
| 5MA8 GFP-binding DARPin 3G124nc Deposited 2016-11-03 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；277 K；0.3 M Sodium Acetate. 0.1M TRIS (HOAc) pH 7.5, 25% PEG 2K MME
|
Resolution 2.35 Å R-free 0.236 |
| 5MA8 GFP-binding DARPin 3G124nc Deposited 2016-11-03 | Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain D
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；277 K；0.3 M Sodium Acetate. 0.1M TRIS (HOAc) pH 7.5, 25% PEG 2K MME
|
Resolution 2.35 Å R-free 0.236 |
| 5MA9 GFP-binding DARPin fusion gc_R11 Deposited 2016-11-03 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | EDO 1,2-ETHANEDIOL × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；277 K；0.1 M TRIS pH 8.5, 30% w/v PEG 4000, 0.2 M LiSO4
|
Resolution 1.57 Å R-free 0.203 |
| 5MA9 GFP-binding DARPin fusion gc_R11 Deposited 2016-11-03 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain D
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | EDO 1,2-ETHANEDIOL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；277 K；0.1 M TRIS pH 8.5, 30% w/v PEG 4000, 0.2 M LiSO4
|
Resolution 1.57 Å R-free 0.203 |
| 5MA9 GFP-binding DARPin fusion gc_R11 Deposited 2016-11-03 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain H
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | EDO 1,2-ETHANEDIOL × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；277 K；0.1 M TRIS pH 8.5, 30% w/v PEG 4000, 0.2 M LiSO4
|
Resolution 1.57 Å R-free 0.203 |
| 5MA9 GFP-binding DARPin fusion gc_R11 Deposited 2016-11-03 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain F
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | EDO 1,2-ETHANEDIOL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；277 K；0.1 M TRIS pH 8.5, 30% w/v PEG 4000, 0.2 M LiSO4
|
Resolution 1.57 Å R-free 0.203 |
| 5MAD GFP-binding DARPin 3G61 Deposited 2016-11-03 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | PEG DI(HYDROXYETHYL)ETHER × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；277 K；0.1 M Sodium citrate tribasic, pH 5.5, 30% PEG 4000, 0.2 M Ammonium acetate
|
Resolution 1.53 Å R-free 0.199 |
| 5MAD GFP-binding DARPin 3G61 Deposited 2016-11-03 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain D
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | PEG DI(HYDROXYETHYL)ETHER × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；277 K；0.1 M Sodium citrate tribasic, pH 5.5, 30% PEG 4000, 0.2 M Ammonium acetate
|
Resolution 1.53 Å R-free 0.199 |
| 5MAD GFP-binding DARPin 3G61 Deposited 2016-11-03 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain F
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | PEG DI(HYDROXYETHYL)ETHER × 1 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；277 K；0.1 M Sodium citrate tribasic, pH 5.5, 30% PEG 4000, 0.2 M Ammonium acetate
|
Resolution 1.53 Å R-free 0.199 |
| 5MAD GFP-binding DARPin 3G61 Deposited 2016-11-03 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain H
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | PEG DI(HYDROXYETHYL)ETHER × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；277 K；0.1 M Sodium citrate tribasic, pH 5.5, 30% PEG 4000, 0.2 M Ammonium acetate
|
Resolution 1.53 Å R-free 0.199 |
| 5MAK GFP-binding DARPin fusion gc_R7 Deposited 2016-11-03 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | CIT CITRIC ACID × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；277 K；0.1M Tri Sodium Citrate pH 5.6, 20% v/v 2-Propanol, 20%w/v PEG 4000
|
Resolution 2.50 Å R-free 0.304 |
| 5MAK GFP-binding DARPin fusion gc_R7 Deposited 2016-11-03 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain D
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | CIT CITRIC ACID × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；277 K；0.1M Tri Sodium Citrate pH 5.6, 20% v/v 2-Propanol, 20%w/v PEG 4000
|
Resolution 2.50 Å R-free 0.304 |
| 5MSE GFP nuclear transport receptor mimic 3B8 Deposited 2017-01-04 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
Chain D
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | NA SODIUM ION × 8 IMD IMIDAZOLE × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.1；293 K；5-9% PEG8000, 28% glycerol, 100?mM Imidazole (pH 7.1)
|
Resolution 1.66 Å R-free 0.206 |
| 5N9O EGFP(enhanced green fluorescent protein) mutant - L232H Deposited 2017-02-26 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：L232H Non-standard monomer：Yes (specific site not provided by mmCIF) | AE4 3,6,9,12,15-PENTAOXAHEPTADECAN-1-OL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；288 K；2-propanol ,
MES monohydrate,
PEG 2000
|
Resolution 1.53 Å R-free 0.211 |
| 5O89 Crystal Structure of rsEGFP2 in the fluorescent on-state determined by SFX Deposited 2017-06-12 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 8；293 K；2 M ammonium sulphate, 20 mM NaCl, 120 mM HEPES
|
Resolution 1.70 Å R-free 0.195 |
| 5O8A Crystal Structure of rsEGFP2 in the non-fluorescent off-state determined by SFX Deposited 2017-06-12 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 8；293 K；2 M ammonium sulphate, 20 mM NaCl, 120 mM HEPES
|
Resolution 1.70 Å R-free 0.184 |
| 5O8B Difference-refined excited-state structure of rsEGFP2 1ps following 400nm-laser irradiation of the off-state. Deposited 2017-06-12 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 8；293 K；2 M ammonium sulphate, 20 mM NaCl, 120 mM HEPES
|
Resolution 1.70 Å R-free 0.311 |
| 5O8C Composite structure of rsEGFP2 1ps following 400nm-laser irradiation of the off-state. Deposited 2017-06-12 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 8；293 K；2 M ammonium sulphate, 20 mM NaCl, 120 mM HEPES
|
Resolution 1.70 Å R-free 0.176 |
| 5OX8 Structure of Enhanced Cyan Fluorescent Protein at pH 5.0 Deposited 2017-09-06 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：F64L, S65T, Y66W, N146I, M153T Non-standard monomer：Yes (specific site not provided by mmCIF) | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；293 K；100mM citric acid pH 5.0, 12% PEG8000, 100mM MgCl2
|
Resolution 1.29 Å R-free 0.166 |
| 5OX9 Structure of the Cyan Fluorescent Protein SCFP3A at pH 4.5 Deposited 2017-09-06 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：F64L, S65T, Y66W, S72A, N146I, H148D, M153T, V163A, S175G Non-standard monomer：Yes (specific site not provided by mmCIF) | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；293 K；100mM citric acid pH4.5, 16% PEG8000, 100mM MgCl2
|
Resolution 1.56 Å R-free 0.172 |
| 5OXA Structure of the S205A mutant of the Cyan Fluorescent Protein Cerulean at pH 7.0 Deposited 2017-09-06 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：F64L, S65T, Y66W, N146I, H148D, M153T, S205A Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；293 K；100mM HEPES buffer pH 7.0, 12% PEG8000, 100mM MgCl2
|
Resolution 1.16 Å R-free 0.139 |
| 5OXB Structure of blue-light irradiated Cerulean Deposited 2017-09-06 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：F64L, S65T, Y66W, N146I, H148D, M153T Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；293 K；100mM HEPES pH 7.0, 12% PEG8000, 100mM MgCl2
|
Resolution 1.38 Å R-free 0.157 |
| 5OXC Structure of Cerulean Fluorescent Protein at 1.02 Angstrom resolution Deposited 2017-09-06 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：F64L, S65T, Y66W, N146I, H148D, M153T Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；100mM HEPES 7.0, 12% PEG8000, 100mM MgCl2
|
Resolution 1.02 Å R-free 0.115 |
| 5T3I cyan fluorescence protein soaked with selenourea for 5 min Deposited 2016-08-25 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | SEY selenourea × 13 PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 5；293 K；16% (w/v) PEG 3350, 50 mM citric acid, and 50 mM bis-tris propane buffer pH 5.0.
|
Resolution 1.60 Å R-free 0.177 |
| 5WJ2 Crystal structure of the green fluorescent protein Clover Deposited 2017-07-21 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S30R, Y39N, S66X, Y66X, G66X, Q69A, F99S, N105T, Y145F, M153T, V163A, I171V, and T203H Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 8.5；293 K；100mM Tris, pH 8.5, 50mM MgCl2, 25% PEG3350
|
Resolution 2.41 Å R-free 0.217 |
| 5WJ2 Crystal structure of the green fluorescent protein Clover Deposited 2017-07-21 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
2–238（237 aa）
|
Mutation：S30R, Y39N, S66X, Y66X, G66X, Q69A, F99S, N105T, Y145F, M153T, V163A, I171V, and T203H Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 8.5；293 K；100mM Tris, pH 8.5, 50mM MgCl2, 25% PEG3350
|
Resolution 2.41 Å R-free 0.217 |
| 5WJ3 Crystal structure of green fluorescent protein Clover mutant S147C/Q204C Deposited 2017-07-21 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Mutation：S30R, Y39N, Q69A, F99S, N105T, Y145F, S147C, M153T, V163A, T203H, Q204C Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 8.5；293 K；100mM Tris, pH 8.5, 50mM MgCl2, 25% PEG3350
|
Resolution 1.35 Å R-free 0.162 |
| 5WJ3 Crystal structure of green fluorescent protein Clover mutant S147C/Q204C Deposited 2017-07-21 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
3–238（236 aa）
|
Mutation：S30R, Y39N, Q69A, F99S, N105T, Y145F, S147C, M153T, V163A, T203H, Q204C Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 8.5；293 K；100mM Tris, pH 8.5, 50mM MgCl2, 25% PEG3350
|
Resolution 1.35 Å R-free 0.162 |
| 5WJ4 Crystal structure of redox-sensitive green fluorescent protein Clover mutant roClover1 Deposited 2017-07-21 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S30R, Y39N, S65X, Y65X, G65X, Q69A, F99S, N105T, Y145F, S147C, H148D, M153T, V163A, I171V, T203V, Q204C, E222Q. Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 8.5；293 K；100mM Tris, pH 8.5, 50mM MgCl2, 25% PEG3350
|
Resolution 1.63 Å R-free 0.193 |
| 5WJ4 Crystal structure of redox-sensitive green fluorescent protein Clover mutant roClover1 Deposited 2017-07-21 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
2–238（237 aa）
|
Mutation：S30R, Y39N, S65X, Y65X, G65X, Q69A, F99S, N105T, Y145F, S147C, H148D, M153T, V163A, I171V, T203V, Q204C, E222Q. Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 8.5；293 K；100mM Tris, pH 8.5, 50mM MgCl2, 25% PEG3350
|
Resolution 1.63 Å R-free 0.193 |
| 6AA2 X-ray structure of ReQy1 (oxidized form) Deposited 2018-07-17 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：K26R, F46L, T65G, S72A, R80Q, S99F, Y145G, N146W, S147CA, V150I, T167I, T203Y, Q204C, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；293 K；50mM Tris-HCl(pH 7.5), 150mM NaCl, 250mM Trilithium Citrate, 14%(w/v) PEG 3350
|
Resolution 2.30 Å R-free 0.229 |
| 6AA2 X-ray structure of ReQy1 (oxidized form) Deposited 2018-07-17 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
2–238（237 aa）
|
Mutation：K26R, F46L, T65G, S72A, R80Q, S99F, Y145G, N146W, S147CA, V150I, T167I, T203Y, Q204C, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；293 K；50mM Tris-HCl(pH 7.5), 150mM NaCl, 250mM Trilithium Citrate, 14%(w/v) PEG 3350
|
Resolution 2.30 Å R-free 0.229 |
| 6AA2 X-ray structure of ReQy1 (oxidized form) Deposited 2018-07-17 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
2–238（237 aa）
|
Mutation：K26R, F46L, T65G, S72A, R80Q, S99F, Y145G, N146W, S147CA, V150I, T167I, T203Y, Q204C, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；293 K；50mM Tris-HCl(pH 7.5), 150mM NaCl, 250mM Trilithium Citrate, 14%(w/v) PEG 3350
|
Resolution 2.30 Å R-free 0.229 |
| 6AA6 X-ray structure of ReQy1 (reduced form) Deposited 2018-07-17 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：K26R, F46L, T65G, S72A, R80Q, S99F, Y145G, N146W, S147SA, V150I, T167I, T203Y, Q204C, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；50mM Tris-HCl(pH7.0), 150mM NaCl, 20%(w/v) PEG3350
|
Resolution 2.39 Å R-free 0.247 |
| 6AA6 X-ray structure of ReQy1 (reduced form) Deposited 2018-07-17 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
2–238（237 aa）
|
Mutation：K26R, F46L, T65G, S72A, R80Q, S99F, Y145G, N146W, S147SA, V150I, T167I, T203Y, Q204C, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；50mM Tris-HCl(pH7.0), 150mM NaCl, 20%(w/v) PEG3350
|
Resolution 2.39 Å R-free 0.247 |
| 6AS9 Filamentous Assembly of Green Fluorescent Protein Supported by a C-terminal fusion of 18-residues, viewed in space group P212121 form 2 Deposited 2017-08-23 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 5 PDB declaration: pentameric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | ACT ACETATE ION × 10 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 10 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；277 K；0.1 M sodium acetate, pH 5.0 and 65% (v/v) 2-methyl-2,4-pentanediol
|
Resolution 1.75 Å R-free 0.183 |
| 6B7R Truncated strand 11-less green fluorescent protein Deposited 2017-10-05 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
2–214（213 aa）
|
Mutation：S30R, Y39I, C48S, F64L, S66X, Y66X, G66X, C70A, Q80R, F99S, N105K, E111V, I128T, Y145F, M153T, V163A, K166T, I167V, I171V, A206K Non-standard monomer：Yes (specific site not provided by mmCIF) | NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；277 K；0.1M CHES pH 9.5, 1.0M trisodium citrate
|
Resolution 1.73 Å R-free 0.184 |
| 6B7R Truncated strand 11-less green fluorescent protein Deposited 2017-10-05 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–214（213 aa）
|
Mutation：S30R, Y39I, C48S, F64L, S66X, Y66X, G66X, C70A, Q80R, F99S, N105K, E111V, I128T, Y145F, M153T, V163A, K166T, I167V, I171V, A206K Non-standard monomer：Yes (specific site not provided by mmCIF) | NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；277 K；0.1M CHES pH 9.5, 1.0M trisodium citrate
|
Resolution 1.73 Å R-free 0.184 |
| 6B7T Truncated strand 10-less green fluorescent protein Deposited 2017-10-05 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
214–237（24 aa）
Chain A
3–194（192 aa）
|
Mutation：;K3Q, S30R, Y39I, C48S, F64L, S66X, Y66X, G66X, C70A, Q80R, F99S, N105K, E111V, I128T, Y145F, M153T, V163A, K166T, I167V, I171V, L221H, F223Y, T225N,K3Q, S30R, Y39I, C48S, F64L, S66X, Y66X, G66X, C70A, Q80R, F99S, N105K, E111V, I128T, Y145F, M153T, V163A, K166T, I167V, I171V, L221H, F223Y, T225N ; Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：;K3Q, S30R, Y39I, C48S, F64L, S66X, Y66X, G66X, C70A, Q80R, F99S, N105K, E111V, I128T, Y145F, M153T, V163A, K166T, I167V, I171V, L221H, F223Y, T225N,K3Q, S30R, Y39I, C48S, F64L, S66X, Y66X, G66X, C70A, Q80R, F99S, N105K, E111V, I128T, Y145F, M153T, V163A, K166T, I167V, I171V, L221H, F223Y, T225N ; Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.1M HEPES pH 7.0, 0.2M ammonium chloride, 22.5 v/v% PEG 6000
|
Resolution 1.91 Å R-free 0.209 |
| 6B7T Truncated strand 10-less green fluorescent protein Deposited 2017-10-05 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
214–237（24 aa）
Chain B
3–194（192 aa）
|
Mutation：;K3Q, S30R, Y39I, C48S, F64L, S66X, Y66X, G66X, C70A, Q80R, F99S, N105K, E111V, I128T, Y145F, M153T, V163A, K166T, I167V, I171V, L221H, F223Y, T225N,K3Q, S30R, Y39I, C48S, F64L, S66X, Y66X, G66X, C70A, Q80R, F99S, N105K, E111V, I128T, Y145F, M153T, V163A, K166T, I167V, I171V, L221H, F223Y, T225N ; Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：;K3Q, S30R, Y39I, C48S, F64L, S66X, Y66X, G66X, C70A, Q80R, F99S, N105K, E111V, I128T, Y145F, M153T, V163A, K166T, I167V, I171V, L221H, F223Y, T225N,K3Q, S30R, Y39I, C48S, F64L, S66X, Y66X, G66X, C70A, Q80R, F99S, N105K, E111V, I128T, Y145F, M153T, V163A, K166T, I167V, I171V, L221H, F223Y, T225N ; Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.1M HEPES pH 7.0, 0.2M ammonium chloride, 22.5 v/v% PEG 6000
|
Resolution 1.91 Å R-free 0.209 |
| 6EFR Crystal Structure of iNicSnFR 1.0 Deposited 2018-08-17 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–145（145 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；298 K；6mM nicotine, 50mM MgCl2, 10mM HEPES, 30% PEG 550
|
Resolution 2.40 Å R-free 0.250 |
| 6FLL SPECTROSCOPIC AND STRUCTURAL STUDY OF QW, A EGFP MUTANT SHOWING PHOTOSWITCHING PROPERTIES Deposited 2018-01-26 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；293 K；PEG 3350, 0.1 M AMMONIUM ACETATE, 0.2 M NH4F, PH 5.0
|
Resolution 1.79 Å R-free 0.232 |
| 6FWW GFP/KKK. A redesigned GFP with improved solubility Deposited 2018-03-07 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：V11K, Y39K, F64L, F99S, M153T, V163A, L221K Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4；291 K；0.1 M MMT buffer, 25 % PEG 1500, pH 4.0
|
Resolution 1.13 Å R-free 0.203 |
| 6GEL The structure of TWITCH-2B Deposited 2018-04-26 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–227（227 aa）
Chain A
174–238（65 aa）
Chain A
1–173（173 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 2 GOL GLYCEROL × 1 PG4 TETRAETHYLENE GLYCOL × 2 FMT FORMIC ACID × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 7；293 K；0.2 M sodium formiate, 5 mM calcium chloride, 18 % PEG 3350
|
Resolution 2.51 Å R-free 0.240 |
| 6GEL The structure of TWITCH-2B Deposited 2018-04-26 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–227（227 aa）
Chain B
174–238（65 aa）
Chain B
1–173（173 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 2 GOL GLYCEROL × 2 FMT FORMIC ACID × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 7；293 K；0.2 M sodium formiate, 5 mM calcium chloride, 18 % PEG 3350
|
Resolution 2.51 Å R-free 0.240 |
| 6GEZ THE STRUCTURE OF TWITCH-2B N532F Deposited 2018-04-27 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–227（227 aa）
Chain A
174–238（65 aa）
Chain A
1–173（173 aa）
|
Mutation：N532F Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：N532F Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：N532F Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 2 FMT FORMIC ACID × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 7；293 K；0.2 M SODIUM FORMIATE, PH 7.0, 5 MM CALCIUM CHLORIDE, 20 % PEG3350
|
Resolution 2.47 Å R-free 0.234 |
| 6GEZ THE STRUCTURE OF TWITCH-2B N532F Deposited 2018-04-27 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–227（227 aa）
Chain B
174–238（65 aa）
Chain B
1–173（173 aa）
|
Mutation：N532F Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：N532F Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：N532F Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 2 FMT FORMIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 7；293 K；0.2 M SODIUM FORMIATE, PH 7.0, 5 MM CALCIUM CHLORIDE, 20 % PEG3350
|
Resolution 2.47 Å R-free 0.234 |
| 6GO8 Structure of GFPmut2 crystallized at pH 6 Deposited 2018-06-01 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：S65A, V68L, S72A: First six residues GSHIGP derive from the expression tag Non-standard monomer：Yes (specific site not provided by mmCIF) | MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 1 MRD (4R)-2-METHYLPENTANE-2,4-DIOL × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 6；277 K；45% MPD
|
Resolution 1.65 Å R-free 0.174 |
| 6GO9 Structure of GFPmut2 crystallized at pH 6 and transferred to pH 7 Deposited 2018-06-01 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：S65A, V68L, S72A: First six residues GSHIGP derive from the expression tag Non-standard monomer：Yes (specific site not provided by mmCIF) | MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 2 MRD (4R)-2-METHYLPENTANE-2,4-DIOL × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 6；277 K；45% MPD
|
Resolution 1.67 Å R-free 0.193 |
| 6GQG Structure of GFPmut2 crystallized at pH 8.5 Deposited 2018-06-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：S65A, V68L, S72A; First six residues GSHIGP derive from the expression tag Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 8.5；277 K；0.2 M CaCl2, 19% PEG 4000
|
Resolution 1.79 Å R-free 0.223 |
| 6GQH Structure of GFPmut2 crystallized at pH 8.5 and transferred to pH 6 Deposited 2018-06-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：S65A, V68L, S72A; First six residues GSHIGP derive from the expression tag Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 8.5；277 K；0.2 M CaCl2, 19% PEG 4000
|
Resolution 2.40 Å R-free 0.236 |
| 6GRM Structure of GFPmut2 crystallized at pH 6 and transferred to pH 9 Deposited 2018-06-11 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：S65A, V68L, S72A: First six residues GSHIGP derive from the expression tag Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 6；277 K；MPD 45%
|
Resolution 2.30 Å R-free 0.275 |
| 6HR1 Crystal structure of the YFPnano fusion protein Deposited 2018-09-26 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | TLA L(+)-TARTARIC ACID × 1 CA CALCIUM ION × 4 EDO 1,2-ETHANEDIOL × 2 GOL GLYCEROL × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 7.8；293 K；24% w/v PEG 3350
0.2 M di-Ammonium tartrate
10% v/v Glycerol
|
Resolution 1.90 Å R-free 0.214 |
| 6HR1 Crystal structure of the YFPnano fusion protein Deposited 2018-09-26 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 4 EDO 1,2-ETHANEDIOL × 7 GOL GLYCEROL × 2 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 7.8；293 K；24% w/v PEG 3350
0.2 M di-Ammonium tartrate
10% v/v Glycerol
|
Resolution 1.90 Å R-free 0.214 |
| 6IR6 Green fluorescent protein variant GFPuv with the native lysine residue at the C-terminus Deposited 2018-11-12 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：Q80R, F99S, M153T, V163A, A206K Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；30%(w/v) PEG 1500, 3%(v/v) MPD, 0.2M Magnesium sulfate, 0.1M Sodium acetate/Acetic acid pH 5.5
|
Resolution 1.64 Å R-free 0.216 |
| 6IR7 Green fluorescent protein variant GFPuv with the modification to 6-hydroxynorleucine at the C-terminus Deposited 2018-11-12 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–237（236 aa）
|
Mutation：Q80R, F99S, M153T, V163A, A206K Non-standard monomer：Yes (specific site not provided by mmCIF) | LDO 6-HYDROXY-L-NORLEUCINE × 1 SO4 SULFATE ION × 1 MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；0.2 M Ammonium Sulfate, 0.1 M MES pH 6.5, 30% PEGMME5000
|
Resolution 1.28 Å R-free 0.195 |
| 6ITC Structure of a substrate engaged SecA-SecY protein translocation machine Deposited 2018-11-21 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 7 PDB declaration: heptameric |
Chain G
1–238（238 aa）
|
Mutation：Q80R,F99S,M153T,V163A Non-standard monomer：Yes (specific site not provided by mmCIF) | MG MAGNESIUM ION × 1 BEF BERYLLIUM TRIFLUORIDE ION × 1 ADP ADENOSINE-5'-DIPHOSPHATE × 1 PGV (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 2 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.45 Å |
| 6JGH Crystal structure of the F99S/M153T/V163A/T203I variant of GFP at 0.94 A Deposited 2019-02-14 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–231（230 aa）
|
Mutation：T203I, F99S, M153T, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 8.5；308 K；PEG 4000, MgCl2, Tris-HCl buffer
|
Resolution 0.94 Å R-free 0.129 |
| 6JGI Crystal structure of the S65T/F99S/M153T/V163A variant of GFP at 0.85 A Deposited 2019-02-14 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–231（230 aa）
|
Mutation：S65T, F99S, M153T, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 8.5；308 K；PEG 4000, MgCl2, Tris-HCl buffer
|
Resolution 0.85 Å R-free 0.112 |
| 6JGJ Crystal structure of the F99S/M153T/V163A/E222Q variant of GFP at 0.78 A Deposited 2019-02-14 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–231（230 aa）
|
Mutation：E222Q, F99S, M153T, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) | MG MAGNESIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 8.5；308 K；PEG 4000, MgCl2, Tris-HCl buffer
|
Resolution 0.78 Å R-free 0.125 |
| 6KKZ Crystal structure of the S65T/F99S/M153T/V163A variant of perdeuterated GFP at pD 8.5 Deposited 2019-07-28 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–231（230 aa）
|
Mutation：S65T, F99S, M153T, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 8.1；308 K；PEG 4000, MgCl2, Tris-DCl buffer
|
Resolution 0.90 Å R-free 0.123 |
| 6KL0 Crystal structure of the S65T/F99S/M153T/V163A variant of perdeuterated GFP at pD 7.0 Deposited 2019-07-28 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–231（230 aa）
|
Mutation：S65T, F99S, M153T, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 6.6；308 K；PEG 4000, MgCl2, Tris-DCl buffer
|
Resolution 0.80 Å R-free 0.120 |
| 6KL1 Crystal structure of the S65T/F99S/M153T/V163A variant of non-deuterated GFP at pD 8.5 Deposited 2019-07-28 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–232（231 aa）
|
Mutation：S65T, F99S, M153T, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 8.1；308 K；PEG 4000, MgCl2, Tris-DCl buffer
|
Resolution 0.85 Å R-free 0.118 |
| 6L27 X-ray crystal structure of the mutant green fluorescent protein Deposited 2019-10-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
4–231（228 aa）
|
Mutation：SYG was converted to GYS of chromophore by post translational reaction. Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；0.1 M MES-NaOD (pD 7.0), 5.0 % w/v PEG 2000 and 50 mM NDSB
|
Resolution 0.77 Å R-free 0.124 |
| 6LR7 Crystal structure of GFPuv complexed with the nanobody LaG16 at 1.67 Angstron resolution Deposited 2020-01-15 | Different construct Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；293 K；0.3M Sodium Chloride, 0.01M Tris 8.0, 27.5% w/v PEG
|
Resolution 1.67 Å R-free 0.226 |
| 6MB2 Cryo-EM structure of the PYD filament of AIM2 Deposited 2018-08-29 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 30 PDB declaration: 30-meric |
Chain a
2–229（228 aa）
Fragment：UNP residues 2-229
Chain b
2–229（228 aa）
Fragment：UNP residues 2-229
Chain c
2–229（228 aa）
Fragment：UNP residues 2-229
Chain d
2–229（228 aa）
Fragment：UNP residues 2-229
Chain e
2–229（228 aa）
Fragment：UNP residues 2-229
Chain f
2–229（228 aa）
Fragment：UNP residues 2-229
Chain g
2–229（228 aa）
Fragment：UNP residues 2-229
Chain h
2–229（228 aa）
Fragment：UNP residues 2-229
Chain i
2–229（228 aa）
Fragment：UNP residues 2-229
Chain j
2–229（228 aa）
Fragment：UNP residues 2-229
Chain k
2–229（228 aa）
Fragment：UNP residues 2-229
Chain l
2–229（228 aa）
Fragment：UNP residues 2-229
Chain m
2–229（228 aa）
Fragment：UNP residues 2-229
Chain n
2–229（228 aa）
Fragment：UNP residues 2-229
Chain o
2–229（228 aa）
Fragment：UNP residues 2-229
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 5.00 Å R-free 0.423 |
| 6MDR Cryo-EM structure of the Ceru+32/GFP-17 protomer Deposited 2018-09-05 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 16 PDB declaration: hexadecameric |
Chain a
3–232（230 aa）
Fragment：UNP residues 3-232
Chain b
2–232（231 aa）
Fragment：UNP residues 3-232
Chain c
3–232（230 aa）
Fragment：UNP residues 3-232
Chain d
2–232（231 aa）
Fragment：UNP residues 3-232
Chain e
3–232（230 aa）
Fragment：UNP residues 3-232
Chain f
2–232（231 aa）
Fragment：UNP residues 3-232
Chain g
3–232（230 aa）
Fragment：UNP residues 3-232
Chain h
2–232（231 aa）
Fragment：UNP residues 3-232
Chain i
3–232（230 aa）
Fragment：UNP residues 3-232
Chain j
2–232（231 aa）
Fragment：UNP residues 3-232
Chain k
3–232（230 aa）
Fragment：UNP residues 3-232
Chain l
2–232（231 aa）
Fragment：UNP residues 3-232
Chain m
3–232（230 aa）
Fragment：UNP residues 3-232
Chain n
2–232（231 aa）
Fragment：UNP residues 3-232
Chain o
3–232（230 aa）
Fragment：UNP residues 3-232
Chain p
2–232（231 aa）
Fragment：UNP residues 3-232
|
Mutation：;E7R, T10R, V12K, D20K, E33K, E35K, Y67W, S73A, D77K, E91K, D103K, D118R, E125K, I129R, D134K, E143R, F146G, N147I, H149D, N150K, Q158R, N165K, E173K, D191R, D198R, Q205R, N213K, T231K ; Mutation：T39D, T44D, R81E, N150E, K157D, Q158E, N165E, V194D, N199E, A228D, H232E Mutation：;E7R, T10R, V12K, D20K, E33K, E35K, Y67W, S73A, D77K, E91K, D103K, D118R, E125K, I129R, D134K, E143R, F146G, N147I, H149D, N150K, Q158R, N165K, E173K, D191R, D198R, Q205R, N213K, T231K ; Mutation：T39D, T44D, R81E, N150E, K157D, Q158E, N165E, V194D, N199E, A228D, H232E Mutation：;E7R, T10R, V12K, D20K, E33K, E35K, Y67W, S73A, D77K, E91K, D103K, D118R, E125K, I129R, D134K, E143R, F146G, N147I, H149D, N150K, Q158R, N165K, E173K, D191R, D198R, Q205R, N213K, T231K ; Mutation：T39D, T44D, R81E, N150E, K157D, Q158E, N165E, V194D, N199E, A228D, H232E Mutation：;E7R, T10R, V12K, D20K, E33K, E35K, Y67W, S73A, D77K, E91K, D103K, D118R, E125K, I129R, D134K, E143R, F146G, N147I, H149D, N150K, Q158R, N165K, E173K, D191R, D198R, Q205R, N213K, T231K ; Mutation：T39D, T44D, R81E, N150E, K157D, Q158E, N165E, V194D, N199E, A228D, H232E Mutation：;E7R, T10R, V12K, D20K, E33K, E35K, Y67W, S73A, D77K, E91K, D103K, D118R, E125K, I129R, D134K, E143R, F146G, N147I, H149D, N150K, Q158R, N165K, E173K, D191R, D198R, Q205R, N213K, T231K ; Mutation：T39D, T44D, R81E, N150E, K157D, Q158E, N165E, V194D, N199E, A228D, H232E Mutation：;E7R, T10R, V12K, D20K, E33K, E35K, Y67W, S73A, D77K, E91K, D103K, D118R, E125K, I129R, D134K, E143R, F146G, N147I, H149D, N150K, Q158R, N165K, E173K, D191R, D198R, Q205R, N213K, T231K ; Mutation：T39D, T44D, R81E, N150E, K157D, Q158E, N165E, V194D, N199E, A228D, H232E Mutation：;E7R, T10R, V12K, D20K, E33K, E35K, Y67W, S73A, D77K, E91K, D103K, D118R, E125K, I129R, D134K, E143R, F146G, N147I, H149D, N150K, Q158R, N165K, E173K, D191R, D198R, Q205R, N213K, T231K ; Mutation：T39D, T44D, R81E, N150E, K157D, Q158E, N165E, V194D, N199E, A228D, H232E Mutation：;E7R, T10R, V12K, D20K, E33K, E35K, Y67W, S73A, D77K, E91K, D103K, D118R, E125K, I129R, D134K, E143R, F146G, N147I, H149D, N150K, Q158R, N165K, E173K, D191R, D198R, Q205R, N213K, T231K ; Mutation：T39D, T44D, R81E, N150E, K157D, Q158E, N165E, V194D, N199E, A228D, H232E | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.47 Å |
| 6MWQ Single particle cryoEM structure of a DARPin-aldolase platform in complex with GFP Deposited 2018-10-30 | Different construct Different mutation/modification Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain G
2–230（229 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE；Grids were frozen on a manual plunger at the Scripps Research Institute Core Microscopy Facility in a 4 degrees C cold room humidified to >95%.
|
Resolution 3.00 Å |
| 6MWQ Single particle cryoEM structure of a DARPin-aldolase platform in complex with GFP Deposited 2018-10-30 | Different construct Different mutation/modification Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain J
2–230（229 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE；Grids were frozen on a manual plunger at the Scripps Research Institute Core Microscopy Facility in a 4 degrees C cold room humidified to >95%.
|
Resolution 3.00 Å |
| 6MWQ Single particle cryoEM structure of a DARPin-aldolase platform in complex with GFP Deposited 2018-10-30 | Different construct Different mutation/modification Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain I
2–230（229 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE；Grids were frozen on a manual plunger at the Scripps Research Institute Core Microscopy Facility in a 4 degrees C cold room humidified to >95%.
|
Resolution 3.00 Å |
| 6MWQ Single particle cryoEM structure of a DARPin-aldolase platform in complex with GFP Deposited 2018-10-30 | Different construct Different mutation/modification Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 4 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain H
2–230（229 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE；Grids were frozen on a manual plunger at the Scripps Research Institute Core Microscopy Facility in a 4 degrees C cold room humidified to >95%.
|
Resolution 3.00 Å |
| 6QQ8 Cryogenic temperature structure of the fluorescent protein Cerulean recorded after an accumulated dose of 290 kGy Deposited 2019-02-18 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；293 K；100mM HEPES pH 7.0, 12% PEG8000, 100mM MgCl2
|
Resolution 1.46 Å R-free 0.197 |
| 6QQ9 Cryogenic temperature structure of the fluorescent protein Cerulean recorded after an accumulated dose of 5.8 MGy Deposited 2019-02-18 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | CO2 CARBON DIOXIDE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；293 K；100mM HEPES 7.0, 12% PEG8000, 100mM MgCl2
|
Resolution 1.82 Å R-free 0.195 |
| 6QQA Room temperature structure of the fluorescent protein Cerulean recorded after an accumulated dose of 21 kGy Deposited 2019-02-18 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；293 K；15% PEG 8000, 0.1M MGCL2, 0.1 M HEPES PH 7.0
|
Resolution 1.66 Å R-free 0.167 |
| 6QQB Room temperature structure of the fluorescent protein Cerulean recorded after an accumulated dose of 147 kGy Deposited 2019-02-18 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；293 K；15% PEG 8000, 0.1M MGCL2, 0.1 M HEPES
|
Resolution 2.45 Å R-free 0.266 |
| 6QUH GHK tagged GFP variant crystal form II at 1.34A wavelength Deposited 2019-02-27 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
2–230（229 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 3 CU COPPER (II) ION × 2 CA CALCIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；0.1M Sosium Acetate pH 5.4, 30%MPD, 0.1M Cacl2
|
Resolution 1.50 Å R-free 0.188 |
| 6QUH GHK tagged GFP variant crystal form II at 1.34A wavelength Deposited 2019-02-27 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain E
2–230（229 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 3 CU COPPER (II) ION × 2 CA CALCIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；0.1M Sosium Acetate pH 5.4, 30%MPD, 0.1M Cacl2
|
Resolution 1.50 Å R-free 0.188 |
| 6QUI GHK tagged GFP variant at 17Kev Deposited 2019-02-27 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
2–230（229 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | CU COPPER (II) ION × 1 SO4 SULFATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；0.1M Mes pH 6.5, 1.2M Ammonium sulphate, 8% glycerol
|
Resolution 1.94 Å R-free 0.224 |
| 6QUI GHK tagged GFP variant at 17Kev Deposited 2019-02-27 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain E
2–230（229 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | CU COPPER (II) ION × 1 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；0.1M Mes pH 6.5, 1.2M Ammonium sulphate, 8% glycerol
|
Resolution 1.94 Å R-free 0.224 |
| 6QUJ GHK tagged GFP variant Deposited 2019-02-27 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
2–230（229 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | CU COPPER (II) ION × 1 SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；0.1M Mes pH 6.5, 1.2M Ammonium Sulphate, 8% Glycerol
|
Resolution 1.68 Å R-free 0.221 |
| 6QUJ GHK tagged GFP variant Deposited 2019-02-27 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain E
2–230（229 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | CU COPPER (II) ION × 1 SO4 SULFATE ION × 1 GOL GLYCEROL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；0.1M Mes pH 6.5, 1.2M Ammonium Sulphate, 8% Glycerol
|
Resolution 1.68 Å R-free 0.221 |
| 6SM0 Venus 66 p-Azido-L-Phenylalanin (azF) variant, dark grown Deposited 2019-08-21 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–230（229 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | OXY OXYGEN MOLECULE × 1 ZN ZINC ION × 1 SO4 SULFATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 5；293 K；10mM Zn Cl2, 100 mM Na acetate,
20% PEG 6000
|
Resolution 1.91 Å R-free 0.243 |
| 6T39 Crystal structure of rsEGFP2 in its off-state determined by SFX Deposited 2019-10-10 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；pH 8；293 K；100 mM HEPES pH 8.0, 2.5 M ammonium sulphate
|
Resolution 1.60 Å R-free 0.202 |
| 6T3A Difference-refined structure of rsEGFP2 10 ns following 400-nm laser irradiation of the off-state determined by SFX Deposited 2019-10-10 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；pH 8；293 K；100 mM HEPES pH 8.0, 2.5 M ammonium sulphate
|
Resolution 1.85 Å R-free 0.287 |
| 6T90 OCT4-SOX2-bound nucleosome - SHL-6 Deposited 2019-10-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 10 PDB declaration: dodecameric |
Chain K
1–238（238 aa）
|
Not recorded | PTD PENTANEDIAL × 9 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.05 Å |
| 6UN4 Crystal structure of rsEGFP2, Y67(3-ClY), Y107(3-ClY) Deposited 2019-10-10 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：F64L,Q69L,V163S,A206K,H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.1；293 K；80 mM HEPES, pH 8.1, 1.84 M ammonium sulfate
|
Resolution 1.50 Å R-free 0.198 |
| 6UN5 Crystal structure of green fluorescent protein (GFP); S65T, Y66(2,3,5-F3Y); ih circular permutant (50-51) Deposited 2019-10-10 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
4–50（47 aa）
Chain B
4–50（47 aa）
|
Mutation：;A72S, Q80R, T105K, E111V, I128T, K166T, I167V, S205T, A206V, S232R, Y241I, C250S,A72S, Q80R, T105K, E111V, I128T, K166T, I167V, S205T, A206V ; Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：;A72S, Q80R, T105K, E111V, I128T, K166T, I167V, S205T, A206V, S232R, Y241I, C250S,A72S, Q80R, T105K, E111V, I128T, K166T, I167V, S205T, A206V ; Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；0.15 M ammonium acetate, 31% PEG 3350
|
Resolution 1.36 Å R-free 0.205 |
| 6UN6 Crystal structure of green fluorescent protein (GFP); S65T, Y66(3-NO2Y); ih circular permutant (50-51) Deposited 2019-10-10 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
4–50（47 aa）
Chain B
4–50（47 aa）
|
Mutation：A72S, Q80R, T105K, E111V, I128T, K166T, I167V, S205T, A206V, S232R, Y241I, C250S Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：A72S, Q80R, T105K, E111V, I128T, K166T, I167V, S205T, A206V, S232R, Y241I, C250S Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；0.15 M ammonium acetate, 34% PEG 3350
|
Resolution 1.50 Å R-free 0.181 |
| 6UN7 Crystal structure of green fluorescent protein (GFP); S65T, Y66(3-OMeY); ih circular permutant (50-51) Deposited 2019-10-10 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
4–50（47 aa）
Chain B
4–50（47 aa）
|
Mutation：A72S, Q80R, T105K, E111V, I128T, K166T, I167V, S205T, A206V, S232R, Y241I, C250S Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：A72S, Q80R, T105K, E111V, I128T, K166T, I167V, S205T, A206V, S232R, Y241I, C250S Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；0.15 M ammonium acetate, 34% PEG 3350
|
Resolution 1.50 Å R-free 0.191 |
| 6UZ0 Cardiac sodium channel with flecainide Deposited 2019-11-14 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 2 9Z9 (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en × 5 6OU [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate × 11 K4D Flecainide × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6
cryo-EM vitrification conditions
Cryogen ETHANE；waiting for 20s, blot for 2.5-3.5s before plunging
|
Resolution 3.24 Å |
| 6UZ3 Cardiac sodium channel Deposited 2019-11-14 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 2 9Z9 (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en × 5 6OU [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate × 11 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6
cryo-EM vitrification conditions
Cryogen ETHANE；waiting for 20s, blot for 2.5-3.5s before plunging
|
Resolution 3.50 Å |
| 6VAL Cryo-EM structure of an undecameric chicken CALHM1 and human CALHM2 chimera Deposited 2019-12-17 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 11 PDB declaration: undecameric |
Chain A
1–238（238 aa）
Fragment：GFP + CALHM1 (UNP residues 2-204) + CALMH2 (UNP residues 207-323)
Chain B
1–238（238 aa）
Fragment：GFP + CALHM1 (UNP residues 2-204) + CALMH2 (UNP residues 207-323)
Chain C
1–238（238 aa）
Fragment：GFP + CALHM1 (UNP residues 2-204) + CALMH2 (UNP residues 207-323)
Chain D
1–238（238 aa）
Fragment：GFP + CALHM1 (UNP residues 2-204) + CALMH2 (UNP residues 207-323)
Chain E
1–238（238 aa）
Fragment：GFP + CALHM1 (UNP residues 2-204) + CALMH2 (UNP residues 207-323)
Chain F
1–238（238 aa）
Fragment：GFP + CALHM1 (UNP residues 2-204) + CALMH2 (UNP residues 207-323)
Chain G
1–238（238 aa）
Fragment：GFP + CALHM1 (UNP residues 2-204) + CALMH2 (UNP residues 207-323)
Chain H
1–238（238 aa）
Fragment：GFP + CALHM1 (UNP residues 2-204) + CALMH2 (UNP residues 207-323)
Chain I
1–238（238 aa）
Fragment：GFP + CALHM1 (UNP residues 2-204) + CALMH2 (UNP residues 207-323)
Chain J
1–238（238 aa）
Fragment：GFP + CALHM1 (UNP residues 2-204) + CALMH2 (UNP residues 207-323)
Chain K
1–238（238 aa）
Fragment：GFP + CALHM1 (UNP residues 2-204) + CALMH2 (UNP residues 207-323)
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE；Blot for 4 sec before plunging
|
Resolution 3.87 Å |
| 6VAM Cryo-EM structure of octameric chicken CALHM1 Deposited 2019-12-17 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 8 PDB declaration: octameric |
Chain A
2–238（237 aa）
Fragment：GFP (UNP residues 2-238) + CALHM1 (UNP residues 3-329)
Chain B
2–238（237 aa）
Fragment：GFP (UNP residues 2-238) + CALHM1 (UNP residues 3-329)
Chain C
2–238（237 aa）
Fragment：GFP (UNP residues 2-238) + CALHM1 (UNP residues 3-329)
Chain D
2–238（237 aa）
Fragment：GFP (UNP residues 2-238) + CALHM1 (UNP residues 3-329)
Chain E
2–238（237 aa）
Fragment：GFP (UNP residues 2-238) + CALHM1 (UNP residues 3-329)
Chain F
2–238（237 aa）
Fragment：GFP (UNP residues 2-238) + CALHM1 (UNP residues 3-329)
Chain G
2–238（237 aa）
Fragment：GFP (UNP residues 2-238) + CALHM1 (UNP residues 3-329)
Chain H
2–238（237 aa）
Fragment：GFP (UNP residues 2-238) + CALHM1 (UNP residues 3-329)
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE；Blot for 4 sec before plunging
|
Resolution 3.63 Å |
| 6WRF ClpX-ClpP complex bound to GFP-ssrA, recognition complex Deposited 2020-04-29 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 14 PDB declaration: tetradecameric |
Chain S
3–229（227 aa）
|
Not recorded | AGS PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER × 5 MG MAGNESIUM ION × 5 ADP ADENOSINE-5'-DIPHOSPHATE × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.14 Å |
| 6WSG ClpX-ClpP complex bound to ssrA-tagged GFP, intermediate complex Deposited 2020-04-30 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 14 PDB declaration: tetradecameric |
Chain S
3–229（227 aa）
|
Not recorded | AGS PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER × 5 MG MAGNESIUM ION × 4 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.16 Å |
| 6WV9 Takifugu rubripes VKOR-like with vitamin K1 in noncatalytic state Deposited 2020-05-05 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–144（144 aa）
Chain A
146–238（93 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 7.5；295 K；42% PEG 400, 50 mM ammonium formate, 0.1 M HEPES pH 7.5.
protein-ligand co-crystallization
|
Resolution 3.35 Å R-free 0.282 |
| 6WVA Takifugu rubripes VKOR-like with vitamin K1 epoxide at non-catalytic state Deposited 2020-05-05 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–144（144 aa）
Chain A
146–238（93 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 7.5；295 K；42% PEG 400, 50 mM ammonium formate, 0.1 M HEPES pH 7.5
|
Resolution 3.35 Å R-free 0.278 |
| 6WVD Human JAGN1 Deposited 2020-05-05 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–144（144 aa）
Chain A
146–231（86 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | OLC (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；295 K；30% PEG400, 0.1 M Li2SO4, 0.1M NaCl, 0.1 M Tris pH 8.0
|
Resolution 2.25 Å R-free 0.227 |
| 6WVE Chicken SPCS1 Deposited 2020-05-05 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–144（144 aa）
Chain A
146–231（86 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 6；295 K；25% PEG 400, 100 mM ammonium acetate, 0.1 M MES pH 6.0
|
Resolution 2.43 Å R-free 0.232 |
| 6WVF E.coli DsbB C104S with ubiquinone Deposited 2020-05-05 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–144（144 aa）
Chain A
146–231（86 aa）
|
Mutation：C8A,C49V,C104S Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：C8A,C49V,C104S Non-standard monomer：Yes (specific site not provided by mmCIF) | UQ1 UBIQUINONE-1 × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；295 K；34% PEG 400, 60 mM NaCl, 0.1 M HEPES pH 7.5
|
Resolution 2.90 Å R-free 0.286 |
| 6WVG human CD53 Deposited 2020-05-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–144（144 aa）
Chain A
145–230（86 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | OLC (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate × 4 NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 6；295 K；30% PEG 400, 0.1 M KH2PO4, 0.1 M MES pH 6.0
|
Resolution 2.90 Å R-free 0.269 |
| 6WVG human CD53 Deposited 2020-05-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–144（144 aa）
Chain B
145–230（86 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | OLC (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate × 1 NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 6；295 K；30% PEG 400, 0.1 M KH2PO4, 0.1 M MES pH 6.0
|
Resolution 2.90 Å R-free 0.269 |
| 6WVI VKOR-like from Takifugu rubripes Deposited 2020-05-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–144（144 aa）
Chain A
146–238（93 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | OLC (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
LIPIDIC CUBIC PHASE；pH 7.5；295 K；42% PEG 400, 50 mM ammonium formate, 0.1 M HEPES pH 7.5
|
Resolution 2.40 Å R-free 0.235 |
| 6YOV OCT4-SOX2-bound nucleosome - SHL+6 Deposited 2020-04-15 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 10 PDB declaration: dodecameric |
Chain K
1–238（238 aa）
|
Not recorded | PTD PENTANEDIAL × 8 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.42 Å |
| 6ZSM Crystal structure of rsGCaMP double mutant Ile80His/Val116Ile in the ON state (non-illuminated) Deposited 2020-07-16 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
149–238（90 aa）
Chain A
2–144（143 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 5 FMT FORMIC ACID × 14 EDO 1,2-ETHANEDIOL × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.8；292 K；0.20 M sodium formate, 0.1 M Bis-Tris-Propane buffer pH 8.5, 19% (w/v) PEG 3350
|
Resolution 1.95 Å R-free 0.198 |
| 6ZSN Crystal structure of rsGCaMP double mutant Ile80His/Val116Ile in the OFF state (illuminated) Deposited 2020-07-16 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
149–238（90 aa）
Chain A
2–144（143 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | FMT FORMIC ACID × 6 CA CALCIUM ION × 4 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；292 K；0.20 M sodium formate, 0.1 M Bis-Tris-Propane buffer pH 8.5, 19% (w/v) PEG 3350
|
Resolution 2.60 Å R-free 0.259 |
| 6ZUI Crystal structure of the Cys-Ser mutant of the cpYFP-based biosensor for hypochlorous acid Deposited 2020-07-23 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
145–237（93 aa）
Chain A
2–144（143 aa）
|
Mutation：C353S Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：C353S Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；283.15 K；Tris (0.1 M, pH 8), CaCl2 (0.1 M), MgCl2 (0.1 M) and PE15/4 (15%)
Protein concentration:7 mg/mL
|
Resolution 2.20 Å R-free 0.273 |
| 7A7K rsEGFP in the green-on state Deposited 2020-08-30 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；200 mM (NH4)SO4
100 mM Bis-trip pH 5.5
25 % PEG 3350
|
Resolution 1.55 Å R-free 0.211 |
| 7A7L rsEGFP in the green-off state Deposited 2020-08-30 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | PG4 TETRAETHYLENE GLYCOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；2.0 M (NH4)2SO4
200 mM K/Na-tartrate
100 mM citrate pH 5.0
100 mM b-Nicotinamide adenine dinucleotide
|
Resolution 1.30 Å R-free 0.179 |
| 7AA5 Human TRPV4 structure in presence of 4a-PDD Deposited 2020-09-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 4 PDB declaration: tetrameric |
Chain A
3–238（236 aa）
Chain B
3–238（236 aa）
Chain C
3–238（236 aa）
Chain D
3–238（236 aa）
|
Not recorded | CA CALCIUM ION × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE；blot for 3 seconds before plunging
|
Resolution 4.18 Å |
| 7AMB Crystal structure of rsFolder2 in its fluorescent on-state Deposited 2020-10-08 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–232（231 aa）
|
Mutation：S30R, Y39N, F64L, S65A, Q69L, Q80R, F99S, N105T, M153T, V163S, I171V, A206K Non-standard monomer：Yes (specific site not provided by mmCIF) | GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；293 K；20% PEG 3350, 100 mM Tris pH 8.5, 20 mM NaCl
|
Resolution 1.63 Å R-free 0.190 |
| 7AMB Crystal structure of rsFolder2 in its fluorescent on-state Deposited 2020-10-08 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
2–232（231 aa）
|
Mutation：S30R, Y39N, F64L, S65A, Q69L, Q80R, F99S, N105T, M153T, V163S, I171V, A206K Non-standard monomer：Yes (specific site not provided by mmCIF) | GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；293 K；20% PEG 3350, 100 mM Tris pH 8.5, 20 mM NaCl
|
Resolution 1.63 Å R-free 0.190 |
| 7AMB Crystal structure of rsFolder2 in its fluorescent on-state Deposited 2020-10-08 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
2–232（231 aa）
|
Mutation：S30R, Y39N, F64L, S65A, Q69L, Q80R, F99S, N105T, M153T, V163S, I171V, A206K Non-standard monomer：Yes (specific site not provided by mmCIF) | GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；293 K；20% PEG 3350, 100 mM Tris pH 8.5, 20 mM NaCl
|
Resolution 1.63 Å R-free 0.190 |
| 7AMB Crystal structure of rsFolder2 in its fluorescent on-state Deposited 2020-10-08 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain D
2–232（231 aa）
|
Mutation：S30R, Y39N, F64L, S65A, Q69L, Q80R, F99S, N105T, M153T, V163S, I171V, A206K Non-standard monomer：Yes (specific site not provided by mmCIF) | GOL GLYCEROL × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；293 K；20% PEG 3350, 100 mM Tris pH 8.5, 20 mM NaCl
|
Resolution 1.63 Å R-free 0.190 |
| 7AMF Crystal structure of rsFolder2 in its non-fluorescent off-state Deposited 2020-10-08 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–232（231 aa）
|
Mutation：S30R, Y39N, F64L, S65A, Q69L, Q80R, F99S, N105T, M153T, V163S, I171V, A206K Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；293 K；20% PEG 3350, 100 mM Tris pH 8.5, 20 mM NaCl
|
Resolution 1.63 Å R-free 0.193 |
| 7AMF Crystal structure of rsFolder2 in its non-fluorescent off-state Deposited 2020-10-08 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
2–232（231 aa）
|
Mutation：S30R, Y39N, F64L, S65A, Q69L, Q80R, F99S, N105T, M153T, V163S, I171V, A206K Non-standard monomer：Yes (specific site not provided by mmCIF) | GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；293 K；20% PEG 3350, 100 mM Tris pH 8.5, 20 mM NaCl
|
Resolution 1.63 Å R-free 0.193 |
| 7AMF Crystal structure of rsFolder2 in its non-fluorescent off-state Deposited 2020-10-08 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
2–232（231 aa）
|
Mutation：S30R, Y39N, F64L, S65A, Q69L, Q80R, F99S, N105T, M153T, V163S, I171V, A206K Non-standard monomer：Yes (specific site not provided by mmCIF) | GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；293 K；20% PEG 3350, 100 mM Tris pH 8.5, 20 mM NaCl
|
Resolution 1.63 Å R-free 0.193 |
| 7AMF Crystal structure of rsFolder2 in its non-fluorescent off-state Deposited 2020-10-08 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain D
2–232（231 aa）
|
Mutation：S30R, Y39N, F64L, S65A, Q69L, Q80R, F99S, N105T, M153T, V163S, I171V, A206K Non-standard monomer：Yes (specific site not provided by mmCIF) | GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；293 K；20% PEG 3350, 100 mM Tris pH 8.5, 20 mM NaCl
|
Resolution 1.63 Å R-free 0.193 |
| 7AMU Crystal structure of rsEGFP2 T204A in its fluorescent on-state Deposited 2020-10-09 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：F64L, S65A, Q69L, V163S, A206K, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | GOL GLYCEROL × 6 SO4 SULFATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 11；293 K；Ammonium sulphate
|
Resolution 1.64 Å R-free 0.226 |
| 7BYL Cryo-EM structure of human KCNQ4 Deposited 2020-04-23 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 8 PDB declaration: octameric |
Chain A
2–238（237 aa）
Chain C
2–238（237 aa）
Chain E
2–238（237 aa）
Chain G
2–238（237 aa）
|
Mutation：F64L/S65T/K107T/A206K Mutation：F64L/S65T/K107T/A206K Mutation：F64L/S65T/K107T/A206K Mutation：F64L/S65T/K107T/A206K | PT5 [(2R)-1-octadecanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phospho ryl]oxy-propan-2-yl] (8Z)-icosa-5,8,11,14-tetraenoate × 4 K POTASSIUM ION × 4 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.50 Å |
| 7BYM Cryo-EM structure of human KCNQ4 with retigabine Deposited 2020-04-23 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 8 PDB declaration: octameric |
Chain A
2–238（237 aa）
Chain C
2–238（237 aa）
Chain E
2–238（237 aa）
Chain G
2–238（237 aa）
|
Mutation：F64L/S65T/K107T/A206K/H231L Mutation：F64L/S65T/K107T/A206K/H231L Mutation：F64L/S65T/K107T/A206K/H231L Mutation：F64L/S65T/K107T/A206K/H231L | PT5 [(2R)-1-octadecanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phospho ryl]oxy-propan-2-yl] (8Z)-icosa-5,8,11,14-tetraenoate × 4 FBX ethyl N-[2-azanyl-4-[(4-fluorophenyl)methylamino]phenyl]carbamate × 4 K POTASSIUM ION × 3 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å |
| 7BYN Cryo-EM structure of human KCNQ4 with linopirdine Deposited 2020-04-23 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 8 PDB declaration: octameric |
Chain A
2–238（237 aa）
Chain C
2–238（237 aa）
Chain E
2–238（237 aa）
Chain G
2–238（237 aa）
|
Mutation：F64L/S65T/K107T/A206K/H231L Mutation：F64L/S65T/K107T/A206K/H231L Mutation：F64L/S65T/K107T/A206K/H231L Mutation：F64L/S65T/K107T/A206K/H231L | PT5 [(2R)-1-octadecanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phospho ryl]oxy-propan-2-yl] (8Z)-icosa-5,8,11,14-tetraenoate × 4 K POTASSIUM ION × 3 FCC 1-phenyl-3,3-bis(pyridin-4-ylmethyl)indol-2-one × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.30 Å |
| 7CD7 GFP-40/GFPuv complex, Form I Deposited 2020-06-18 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
3–238（236 aa）
Fragment：UNP residues 3-238
|
Mutation：Q80R, F99S, M153T, V163A, A206K Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；293 K；15% (w/v) PEG 4000, 200 mM MgCl2, 0.1 M Tris-HCl, pH 8.5
|
Resolution 1.70 Å R-free 0.226 |
| 7CD7 GFP-40/GFPuv complex, Form I Deposited 2020-06-18 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain D
3–238（236 aa）
Fragment：UNP residues 3-238
|
Mutation：Q80R, F99S, M153T, V163A, A206K Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；293 K；15% (w/v) PEG 4000, 200 mM MgCl2, 0.1 M Tris-HCl, pH 8.5
|
Resolution 1.70 Å R-free 0.226 |
| 7CD8 GFP-40/GFPuv complex, Form II Deposited 2020-06-18 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
3–238（236 aa）
Fragment：UNP residues 3-238
|
Mutation：Q80R, F99S, M153T, V163A, A206K Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；293 K；5.5% (w/v) PEG 8000, 5% (v/v) ethylene glycol, 50 mM [Co(NH3)6]Cl3, 0.1 M HEPES-Na, pH 7.5
|
Resolution 2.00 Å R-free 0.220 |
| 7K18 Cardiac Sodium channel with toxin bound Deposited 2020-09-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
1–238（238 aa）
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 6OU [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate × 11 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.30 Å |
| 7KM4 Crystal Structure of Oxidized Version of Redox-Sensitive Superfolder Green Fluorescent Protein Deposited 2020-11-02 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；298 K；200, Potassium Chloride, 20% PEG-3350
|
Resolution 2.65 Å R-free 0.321 |
| 7KS0 GluK2/K5 with 6-Cyano-7-nitroquinoxaline-2,3-dione (CNQX) Deposited 2020-11-20 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
2–238（237 aa）
Chain C
2–238（237 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 5.30 Å |
| 7KS3 GluK2/K5 with L-Glu Deposited 2020-11-20 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
2–238（237 aa）
Chain C
2–238（237 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 5.80 Å |
| 7KUY Cyro-EM structure of human Glycine Receptor alpha2-beta heteromer, strychnine bound state Deposited 2020-11-25 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 5 PDB declaration: pentameric |
Chain E
2–238（237 aa）
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 9 SY9 STRYCHNINE × 5 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.60 Å |
| 7L31 Cyro-EM structure of human Glycine Receptor alpha2-beta heteromer, strychnine bound state, 3.8 Angstrom Deposited 2020-12-17 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 5 PDB declaration: pentameric |
Chain E
2–238（237 aa）
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 9 SY9 STRYCHNINE × 5 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.80 Å |
| 7O7C Crystal structure of rsEGFP2 mutant V151A in the non-fluorescent off-state determined by synchrotron radiation at 100K Deposited 2021-04-13 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：M1_S2insV, F64L, S65T, H231L, A206K, Q69L, V163S, T65A, V150A Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293.15 K；100 mM HEPES pH 7.8 - 8.4 and 1.7 - 2.4 M ammonium sulfate
|
Resolution 1.55 Å R-free 0.196 |
| 7O7D Crystal structure of rsEGFP2 mutant V151A in the fluorescent on-state determined by synchrotron radiation at 100K Deposited 2021-04-13 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：M1_S2insV, F64L, S65T, H231L, A206K, Q69L, V163S, T65A, V150A Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；293 K；100 mM HEPES pH 7.8 - 8.4 and 1.7 - 2.4 M ammonium sulfate
|
Resolution 1.40 Å R-free 0.179 |
| 7O7E Crystal structure of rsEGFP2 mutant V151L in the fluorescent on-state determined by synchrotron radiation at 100K Deposited 2021-04-13 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：M1_S2insV, F64L, S65T, H231L, A206K, Q69L, V163S, T65A, V150L Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.8；293 K；1.7 M ammonium sulfate, 100 mM HEPES pH 7.8
|
Resolution 1.80 Å R-free 0.208 |
| 7O7H Crystal structure of rsEGFP2 mutant V151L in the non-fluorescent off-state determined by synchrotron radiation at 100K Deposited 2021-04-13 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：M1_S2insV, F64L, S65T, H231L, A206K, Q69L, V163S, T65A, V150L Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.2；293 K；1.8 M ammonium sulfate, 100 mM HEPES pH 8.2
|
Resolution 1.70 Å R-free 0.197 |
| 7O7U Crystal structure of rsEGFP2 in the non-fluorescent off-state determined by serial femtosecond crystallography at room temperature Deposited 2021-04-13 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：M1_S2insV, F64L, S65T, H231L, A206K, Q69L, V163S, T65A Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 8；293 K；100 mM HEPES pH 8.0, 2 M ammonium sulphate
|
Resolution 1.70 Å R-free 0.215 |
| 7O7V Crystal structure of rsEGFP2 mutant V151A in the fluorescent on-state determined by serial femtosecond crystallography at room temperature Deposited 2021-04-13 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：M1_S2insV, F64L, S65T, H231L, A206K, Q69L, V163S, T65A, V150A Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 8；293 K；100 mM HEPES pH 8.0, 2 M ammonium sulphate
|
Resolution 1.90 Å R-free 0.192 |
| 7O7W Crystal structure of rsEGFP2 mutant V151L in the non-fluorescent off-state the determined by serial femtosecond crystallography at room temperature Deposited 2021-04-13 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：M1_S2insV, F64L, S65T, H231L, A206K, Q69L, V163S, T65A, V150L Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 8；293 K；100 mM HEPES pH 8.0, 2 M ammonium sulphate
|
Resolution 2.10 Å R-free 0.213 |
| 7O7X Crystal structure of rsEGFP2 mutant V151A in the non-fluorescent off-state determined by serial femtosecond crystallography at room temperature Deposited 2021-04-13 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：M1_S2insV, F64L, S65T, H231L, A206K, Q69L, V163S, T65A, V150A Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 8；293 K；100 mM HEPES pH 8.0, 2 M ammonium sulphate
|
Resolution 1.95 Å R-free 0.201 |
| 7PCA Functional and structural characterization of redox sensitive superfolder green fluorescent protein and variants Deposited 2021-08-03 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | GOL GLYCEROL × 2 EOH ETHANOL × 2 ARF FORMAMIDE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 7.5；295 K；46% ETOH, 0.25% v/v Dichloromethane
|
Resolution 1.05 Å R-free 0.163 |
| 7PCZ Functional and structural characterization of redox sensitive superfolder green fluorescent protein and variants Deposited 2021-08-04 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | EOH ETHANOL × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 7.5；295 K；10% polyethylenglycol (PEG) 6000, 30% ethanol and 100 mM natriumacetate
|
Resolution 1.35 Å R-free 0.197 |
| 7PCZ Functional and structural characterization of redox sensitive superfolder green fluorescent protein and variants Deposited 2021-08-04 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | EOH ETHANOL × 5 GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 7.5；295 K；10% polyethylenglycol (PEG) 6000, 30% ethanol and 100 mM natriumacetate
|
Resolution 1.35 Å R-free 0.197 |
| 7PD0 Functional and structural characterization of redox sensitive superfolder green fluorescent protein and variants Deposited 2021-08-04 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | PGE TRIETHYLENE GLYCOL × 2 PEG DI(HYDROXYETHYL)ETHER × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 7.5；295 K；30% PEG 4000.
|
Resolution 2.00 Å R-free 0.298 |
| 7PD0 Functional and structural characterization of redox sensitive superfolder green fluorescent protein and variants Deposited 2021-08-04 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | PEG DI(HYDROXYETHYL)ETHER × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 7.5；295 K；30% PEG 4000.
|
Resolution 2.00 Å R-free 0.298 |
| 7PD0 Functional and structural characterization of redox sensitive superfolder green fluorescent protein and variants Deposited 2021-08-04 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | PGE TRIETHYLENE GLYCOL × 1 PEG DI(HYDROXYETHYL)ETHER × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 7.5；295 K；30% PEG 4000.
|
Resolution 2.00 Å R-free 0.298 |
| 7PD0 Functional and structural characterization of redox sensitive superfolder green fluorescent protein and variants Deposited 2021-08-04 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain D
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | PEG DI(HYDROXYETHYL)ETHER × 1 GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 7.5；295 K；30% PEG 4000.
|
Resolution 2.00 Å R-free 0.298 |
| 7PHR Structure of a fully assembled T-cell receptor engaging a tumor-associated peptide-MHC I Deposited 2021-08-18 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 11 PDB declaration: undecameric |
Chain D
1–238（238 aa）
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 6 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.08 Å |
| 7PNN mVenus released from fusion protein. Deposited 2021-09-07 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；287 K；200 mM KCl, 20% (w/v) PEG3350
|
Resolution 1.43 Å R-free 0.169 |
| 7SAH Crystal Structure of LaG16 Nanobody bound to eGFP Deposited 2021-09-22 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 9；295 K；100mM BICINE with 2% (w/v) 1,4-Dioxane and 10% (w/v) PEG20000
|
Resolution 1.60 Å R-free 0.177 |
| 7SAI Crystal Structure of Lag30 Nanobody bound to eGFP Deposited 2021-09-22 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | GOL GLYCEROL × 5 MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID × 1 PO4 PHOSPHATE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；295 K；800 mM KH2PO4/NaH2PO4, 100 mM HEPES
|
Resolution 2.23 Å R-free 0.197 |
| 7SQY CSDaV GFP mutant Deposited 2021-11-07 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 180 PDB declaration: 180-meric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE；blot for 8 seconds before plunging with -2mm off set
|
Resolution 3.40 Å |
| 7SQY CSDaV GFP mutant Deposited 2021-11-07 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 2 Insufficient information Homooligomer；Protein × 3 PDB declaration: trimeric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE；blot for 8 seconds before plunging with -2mm off set
|
Resolution 3.40 Å |
| 7SQY CSDaV GFP mutant Deposited 2021-11-07 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 3 Insufficient information Homooligomer；Protein × 15 PDB declaration: pentadecameric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE；blot for 8 seconds before plunging with -2mm off set
|
Resolution 3.40 Å |
| 7SQY CSDaV GFP mutant Deposited 2021-11-07 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 4 Insufficient information Homooligomer；Protein × 18 PDB declaration: octadecameric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE；blot for 8 seconds before plunging with -2mm off set
|
Resolution 3.40 Å |
| 7SQY CSDaV GFP mutant Deposited 2021-11-07 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 5 Insufficient information Homooligomer；Protein × 3 PDB declaration: trimeric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE；blot for 8 seconds before plunging with -2mm off set
|
Resolution 3.40 Å |
| 7SSV Structure of human Kv1.3 with Fab-ShK fusion Deposited 2021-11-11 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 6 PDB declaration: hexameric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
Chain D
2–238（237 aa）
|
Not recorded | K POTASSIUM ION × 3 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.39 Å |
| 7SSX Structure of human Kv1.3 Deposited 2021-11-11 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 4 PDB declaration: tetrameric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
Chain D
2–238（237 aa）
|
Not recorded | K POTASSIUM ION × 3 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.89 Å |
| 7SSY Structure of human Kv1.3 (alternate conformation) Deposited 2021-11-11 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 4 PDB declaration: tetrameric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
Chain D
2–238（237 aa）
|
Not recorded | K POTASSIUM ION × 3 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.89 Å |
| 7SSZ Structure of human Kv1.3 with A0194009G09 nanobodies Deposited 2021-11-11 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 8 PDB declaration: octameric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
Chain D
2–238（237 aa）
|
Not recorded | K POTASSIUM ION × 3 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.25 Å |
| 7VCM crystal structure of GINKO1 Deposited 2021-09-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–144（143 aa）
Chain A
149–238（90 aa）
|
Mutation：F65L,V94I,M304K,V313A,S325G,D330Y,T353V,A356K,H381L Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：F65L,V94I,M304K,V313A,S325G,D330Y,T353V,A356K,H381L Non-standard monomer：Yes (specific site not provided by mmCIF) | K POTASSIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；0.1M MES pH 6.0, 20% PEG6000
|
Resolution 1.85 Å R-free 0.225 |
| 7VCM crystal structure of GINKO1 Deposited 2021-09-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
2–144（143 aa）
Chain B
149–238（90 aa）
|
Mutation：F65L,V94I,M304K,V313A,S325G,D330Y,T353V,A356K,H381L Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：F65L,V94I,M304K,V313A,S325G,D330Y,T353V,A356K,H381L Non-standard monomer：Yes (specific site not provided by mmCIF) | K POTASSIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；0.1M MES pH 6.0, 20% PEG6000
|
Resolution 1.85 Å R-free 0.225 |
| 7Y96 Crystal structure of the carboxy-terminal domain of a coronavirus M protein fused with a split GFP Deposited 2022-06-24 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 4 PDB declaration: tetrameric |
Chain A
1–144（144 aa）
Fragment：carboxy-terminal domain
Chain A
146–230（85 aa）
Fragment：carboxy-terminal domain
Chain B
1–144（144 aa）
Fragment：carboxy-terminal domain
Chain B
146–230（85 aa）
Fragment：carboxy-terminal domain
|
Mutation：R30S,Y39N,M153T,V163A,I171A,A206V Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：R30S,Y39N,M153T,V163A,I171A,A206V Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：R30S,Y39N,M153T,V163A,I171A,A206V Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：R30S,Y39N,M153T,V163A,I171A,A206V Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 5.3；293 K；0.4 M ammonium sulfate, 0.1 M Bis-Tris pH 5.3, PEG 3350 27%, 0.5% ethyl acetate
|
Resolution 3.42 Å R-free 0.265 |
| 7YDQ Structure of PfNT1(Y190A)-GFP in complex with GSK4 Deposited 2022-07-04 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：Y190A | IRX 5-methyl-N-[2-(2-oxidanylideneazepan-1-yl)ethyl]-2-phenyl-1,3-oxazole-4-carboxamide × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.04 Å |
| 8A6G Room temperature rsEGFP2 with a chlorinated chromophore in the non-fluorescent OFF-state Deposited 2022-06-17 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；293 K；1.3M ammonium sulfate, 100mM Hepes pH 8.1, 20mM NaCl
|
Resolution 1.63 Å R-free 0.195 |
| 8A6N Room temperature rsEGFP2 with a chlorinated chromophore 300 fs after Photoexcitation Deposited 2022-06-18 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；293 K；1.3M ammonium sulfate, 100mM Hepes pH 8.1, 20mM NaCl
|
Resolution 1.63 Å R-free 0.213 |
| 8A6O Room temperature rsEGFP2 with a chlorinated chromophore 600 fs after Photoexcitation Deposited 2022-06-18 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；293 K；1.3M ammonium sulfate, 100mM Hepes pH 8.1, 20mM NaCl
|
Resolution 1.63 Å R-free 0.206 |
| 8A6P Room temperature rsEGFP2 with a chlorinated chromophore 900 fs after photoexcitation Deposited 2022-06-18 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；293 K；1.3M ammonium sulfate, 100mM Hepes pH 8.1, 20mM NaCl
|
Resolution 1.63 Å R-free 0.204 |
| 8A6Q Room temperature rsEGFP2 with a chlorinated chromophore 5 ps after photoexcitation Deposited 2022-06-18 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；293 K；1.3M ammonium sulfate, 100mM Hepes pH 8.1, 20mM NaCl
|
Resolution 1.63 Å R-free 0.207 |
| 8A6R Room temperature rsEGFP2 with a chlorinated chromophore 100 ps after Photoexcitation Deposited 2022-06-18 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；293 K；1.3M ammonium sulfate, 100mM Hepes pH 8.1, 20mM NaCl
|
Resolution 1.63 Å R-free 0.205 |
| 8A6S Room temperature rsEGFP2 with a chlorinated chromophore 1 microsecond after Photoexcitation Deposited 2022-06-19 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；293 K；1.3M ammonium sulfate, 100mM Hepes pH 8.1, 20mM NaCl
|
Resolution 1.63 Å R-free 0.203 |
| 8A7V Room temperature rsEGFP2 in its OFF-state obtained with SFX Deposited 2022-06-21 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICROBATCH；293 K；120 mM HEPES pH 8.0, 1.5 M ammonium sulphate, 20 mM NaCl
|
Resolution 1.46 Å R-free 0.195 |
| 8A83 rsEGFP2 with a chlorinated chromophore in the fluorescent ON-state in a crystal dehydrated after illumination Deposited 2022-06-21 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；1.76 M ammonium sulfate, 0.1 M HEPES; Cryoprotectant 1.6 M sucrose, 2.72 M ammonium sulfate, 0.16 M HEPES
|
Resolution 1.81 Å R-free 0.229 |
| 8AHA rsEGFP2 photoswitched to its off-state at 100K Deposited 2022-07-21 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 8 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.1；293 K；100 mM HEPES buffer, pH 8.1
1.9 M ammonium sulfate
|
Resolution 2.38 Å R-free 0.223 |
| 8AHB rsEGFP2 photoswitched to its off-state at room temperature and back-switched to its on-state at 100K Deposited 2022-07-21 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.1；293 K；100 mM HEPES buffer, pH 8.1
1.9 M ammonium sulfate
|
Resolution 1.79 Å R-free 0.220 |
| 8AM4 Cl-rsEGFP2 Long Wavelength Structure Deposited 2022-08-02 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；293 K；100 mM Hepes pH 8.0, 1.80 M ammonium sulphate, 20 mM NaCl
|
Resolution 2.02 Å R-free 0.257 |
| 8B6S X-ray structure of the haloalkane dehalogenase HaloTag7 fusion to the green fluorescent protein GFP (ChemoG1) labeled with a chloroalkane tetramethylrhodamine fluorophore substrate Deposited 2022-09-27 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | OEH [9-[2-carboxy-5-[2-[2-(6-chloranylhexoxy)ethoxy]ethylcarbamoyl]phenyl]-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium × 1 CL CHLORIDE ION × 1 GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；293 K；0.085 M Tris-HCl pH 8.5, 0.17 M sodium acetate, 15% (v/v) glycerol, 27% (m/v) PEG 4000
|
Resolution 1.80 Å R-free 0.201 |
| 8B6S X-ray structure of the haloalkane dehalogenase HaloTag7 fusion to the green fluorescent protein GFP (ChemoG1) labeled with a chloroalkane tetramethylrhodamine fluorophore substrate Deposited 2022-09-27 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | OEH [9-[2-carboxy-5-[2-[2-(6-chloranylhexoxy)ethoxy]ethylcarbamoyl]phenyl]-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium × 1 CL CHLORIDE ION × 1 GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；293 K；0.085 M Tris-HCl pH 8.5, 0.17 M sodium acetate, 15% (v/v) glycerol, 27% (m/v) PEG 4000
|
Resolution 1.80 Å R-free 0.201 |
| 8B6T X-ray structure of the interface optimized haloalkane dehalogenase HaloTag7 fusion to the green fluorescent protein GFP (ChemoG5-TMR) labeled with a chloroalkane tetramethylrhodamine fluorophore substrate Deposited 2022-09-27 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | OEH [9-[2-carboxy-5-[2-[2-(6-chloranylhexoxy)ethoxy]ethylcarbamoyl]phenyl]-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；293 K；0.2M magnesium chloride, 0.1 M Tris-HCl pH 8.5, 30% (m/v) PEG 4000
|
Resolution 2.00 Å R-free 0.245 |
| 8B6T X-ray structure of the interface optimized haloalkane dehalogenase HaloTag7 fusion to the green fluorescent protein GFP (ChemoG5-TMR) labeled with a chloroalkane tetramethylrhodamine fluorophore substrate Deposited 2022-09-27 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
3–238（236 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | OEH [9-[2-carboxy-5-[2-[2-(6-chloranylhexoxy)ethoxy]ethylcarbamoyl]phenyl]-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；293 K；0.2M magnesium chloride, 0.1 M Tris-HCl pH 8.5, 30% (m/v) PEG 4000
|
Resolution 2.00 Å R-free 0.245 |
| 8BAN Secretagogin (mouse) in complex with its target peptide from SNAP-25 Deposited 2022-10-11 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
2–228（227 aa）
|
Mutation：F64L,Q80R,I167T MUTATIONS IN ENHANCED GFP (HIGHER FLUORESCENCE INTENSITY) Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 6.5；277 K；PEG 3350 (20%), 2 mM CaCl2, 0.1 M Bis-Tris-Propane pH 6.5, 25 mM Tris-HCl pH 8.0, 0.2 M NaI
|
Resolution 2.35 Å R-free 0.248 |
| 8BAN Secretagogin (mouse) in complex with its target peptide from SNAP-25 Deposited 2022-10-11 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Insufficient information Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
2–228（227 aa）
|
Mutation：F64L,Q80R,I167T MUTATIONS IN ENHANCED GFP (HIGHER FLUORESCENCE INTENSITY) Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 6.5；277 K；PEG 3350 (20%), 2 mM CaCl2, 0.1 M Bis-Tris-Propane pH 6.5, 25 mM Tris-HCl pH 8.0, 0.2 M NaI
|
Resolution 2.35 Å R-free 0.248 |
| 8BAV Secretagogin (human) in complex with its target peptide from SNAP-25 Deposited 2022-10-12 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
2–228（227 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | ACT ACETATE ION × 1 CA CALCIUM ION × 4 144 TRIS-HYDROXYMETHYL-METHYL-AMMONIUM × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8；277 K；0.2 M Na-acetate
20% PEG3350
|
Resolution 2.30 Å R-free 0.262 |
| 8BAV Secretagogin (human) in complex with its target peptide from SNAP-25 Deposited 2022-10-12 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Insufficient information Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
2–228（227 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | ACT ACETATE ION × 1 CA CALCIUM ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8；277 K；0.2 M Na-acetate
20% PEG3350
|
Resolution 2.30 Å R-free 0.262 |
| 8BBJ Secretagogin (mouse) in complex with its target peptide from Syntaxin-4 Deposited 2022-10-13 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
2–228（227 aa）
|
Mutation：F64L,Q80R,I167T Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 4 CAC CACODYLATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 8；277 K；0.1 M Na cacodylate pH 5.5, 0.2 M NH4SO4, 25% v/v PEGSM (PEG-smear)
|
Resolution 2.65 Å R-free 0.269 |
| 8BBJ Secretagogin (mouse) in complex with its target peptide from Syntaxin-4 Deposited 2022-10-13 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Insufficient information Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
2–228（227 aa）
|
Mutation：F64L,Q80R,I167T Non-standard monomer：Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 8；277 K；0.1 M Na cacodylate pH 5.5, 0.2 M NH4SO4, 25% v/v PEGSM (PEG-smear)
|
Resolution 2.65 Å R-free 0.269 |
| 8BVG Bright fluorescent protein BrUSLEE with subnanosecond fluorescence lifetime Deposited 2022-12-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
2–238（237 aa）
Chain C
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | GOL GLYCEROL × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；293 K；6.4% Tacsimate pH 5.0, 16% PEG 3350
|
Resolution 2.38 Å R-free 0.271 |
| 8BVG Bright fluorescent protein BrUSLEE with subnanosecond fluorescence lifetime Deposited 2022-12-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain B
2–238（237 aa）
Chain D
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；293 K；6.4% Tacsimate pH 5.0, 16% PEG 3350
|
Resolution 2.38 Å R-free 0.271 |
| 8BVG Bright fluorescent protein BrUSLEE with subnanosecond fluorescence lifetime Deposited 2022-12-03 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 3 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain E
2–238（237 aa）
Chain F
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；293 K；6.4% Tacsimate pH 5.0, 16% PEG 3350
|
Resolution 2.38 Å R-free 0.271 |
| 8BXP SfGFP C148 F206 mutant Deposited 2022-12-09 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–233（233 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；0.2 M sodium acetate trihydrate, 0.1 M Bis-tris propane, pH 7.5, 20% w/v PEG 3350
|
Resolution 1.79 Å R-free 0.234 |
| 8BXP SfGFP C148 F206 mutant Deposited 2022-12-09 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain B
1–233（233 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；0.2 M sodium acetate trihydrate, 0.1 M Bis-tris propane, pH 7.5, 20% w/v PEG 3350
|
Resolution 1.79 Å R-free 0.234 |
| 8C1X sfGFP C148 F206 mutant Deposited 2022-12-21 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–233（233 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；293 K；0.2 M Sodium malonate dibasic monohydrate, 0.1 M Bis-Tris propane, pH 7.5, 20 % w/v PEG 3350
|
Resolution 1.89 Å R-free 0.247 |
| 8C1X sfGFP C148 F206 mutant Deposited 2022-12-21 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain B
1–233（233 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；293 K；0.2 M Sodium malonate dibasic monohydrate, 0.1 M Bis-Tris propane, pH 7.5, 20 % w/v PEG 3350
|
Resolution 1.89 Å R-free 0.247 |
| 8C1X sfGFP C148 F206 mutant Deposited 2022-12-21 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 3 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain C
1–233（233 aa）
Chain D
1–233（233 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；293 K；0.2 M Sodium malonate dibasic monohydrate, 0.1 M Bis-Tris propane, pH 7.5, 20 % w/v PEG 3350
|
Resolution 1.89 Å R-free 0.247 |
| 8C7I Crystal structure of the PS2 assembly factor Psb32 from the cyanobactium Thermosyncechococcus vestitus (formerly elongatus) Deposited 2023-01-16 | Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 9.5；291 K；1 M sodium citrate, 0.1 M CHES pH 9.5
|
Resolution 2.12 Å R-free 0.258 |
| 8DFL Structure of human Kv1.3 with A0194009G09 nanobodies (alternate conformation) Deposited 2022-06-22 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 8 PDB declaration: octameric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
Chain D
2–238（237 aa）
|
Not recorded | K POTASSIUM ION × 3 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.25 Å |
| 8DHR An ester mutant of SfGFP Deposited 2022-06-28 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：R30S, N39Y, L64F, R80Q, S99F, T105N, F145Y, T153M, A163V, V171I, V206A Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；291 K；50 mM Hepes, pH 7.5 and 25% Peg4000
|
Resolution 1.75 Å R-free 0.188 |
| 8DHR An ester mutant of SfGFP Deposited 2022-06-28 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–238（238 aa）
|
Mutation：R30S, N39Y, L64F, R80Q, S99F, T105N, F145Y, T153M, A163V, V171I, V206A Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；291 K；50 mM Hepes, pH 7.5 and 25% Peg4000
|
Resolution 1.75 Å R-free 0.188 |
| 8DN2 Cryo-EM structure of human Glycine Receptor alpha1-beta heteromer, glycine-bound state 2(expanded open) Deposited 2022-07-10 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 5 PDB declaration: pentameric |
Chain E
1–238（238 aa）
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 5 HEX HEXANE × 10 HP6 HEPTANE × 9 UND UNDECANE × 3 OCT N-OCTANE × 7 GLY GLYCINE × 3 DD9 nonane × 2 NBU N-BUTANE × 3 D10 DECANE × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.90 Å |
| 8DN3 Cryo-EM structure of human Glycine Receptor alpha1-beta heteromer, apo state Deposited 2022-07-10 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 5 PDB declaration: pentameric |
Chain E
1–238（238 aa）
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 5 HEX HEXANE × 15 UND UNDECANE × 12 DD9 nonane × 13 NBU N-BUTANE × 5 HP6 HEPTANE × 8 D10 DECANE × 1 CL CHLORIDE ION × 2 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.55 Å |
| 8DN4 Cryo-EM structure of human Glycine Receptor alpha-1 beta heteromer, glycine-bound state3(desensitized state) Deposited 2022-07-10 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 5 PDB declaration: pentameric |
Chain E
1–238（238 aa）
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 5 LNK PENTANE × 1 HEX HEXANE × 9 NBU N-BUTANE × 3 OCT N-OCTANE × 1 DD9 nonane × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.10 Å |
| 8DN5 Cryo-EM structure of human Glycine Receptor alpha1-beta heteromer, glycine-bound state1(open state) Deposited 2022-07-10 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 5 PDB declaration: pentameric |
Chain E
1–238（238 aa）
|
Not recorded | GLY GLYCINE × 5 NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 5 DD9 nonane × 4 HP6 HEPTANE × 6 HEX HEXANE × 13 UND UNDECANE × 6 NBU N-BUTANE × 8 D10 DECANE × 3 OCT N-OCTANE × 2 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.63 Å |
| 8DPD superfolder GFP Tyr74pCNPhe mutant Deposited 2022-07-15 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：S30R, Y39N, F64L, Q80R, F99S, N105T, Y145F, M153T, V163A, I171V, A206V Non-standard monomer：Yes (specific site not provided by mmCIF) | CO2 CARBON DIOXIDE × 1 EDO 1,2-ETHANEDIOL × 4 PEG DI(HYDROXYETHYL)ETHER × 1 MG MAGNESIUM ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；298 K；0.2 M Magnesium chloride, 0.1 M Tris-HCl pH 8.5, 25% PEG 3350
|
Resolution 1.51 Å R-free 0.252 |
| 8DTA Metal sensitive GFP (mseGFP) complexed with phenylarsine oxide. Deposited 2022-07-25 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：C48S,F64L,S147C,S202C,H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 2 CA CALCIUM ION × 1 PEG DI(HYDROXYETHYL)ETHER × 2 PA0 Phenylarsine oxide × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8；298 K；0.1M Tris, pH 8
0.2M Lithium sulfate
32% PEG3350
|
Resolution 1.81 Å R-free 0.183 |
| 8ET3 Cryo-EM structure of a delivery complex containing the SspB adaptor, an ssrA-tagged substrate, and the AAA+ ClpXP protease Deposited 2022-10-16 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 16 PDB declaration: hexadecameric |
Chain S
3–238（236 aa）
|
Not recorded | AGS PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER × 4 ADP ADENOSINE-5'-DIPHOSPHATE × 2 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.70 Å |
| 8F6P Rat Cardiac Sodium Channel with Ranolazine Bound Deposited 2022-11-16 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 7 BMA beta-D-mannopyranose × 3 XHO (R)-ranolazine × 1 6OU [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate × 6 Y01 CHOLESTEROL HEMISUCCINATE × 13 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.20 Å |
| 8FCK Structure of the vertebrate augmin complex Deposited 2022-12-01 | Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 8 PDB declaration: octameric |
Chain E
2–238（237 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 6.88 Å |
| 8FED Structure of Mce1-LucB complex from Mycobacterium smegmatis (Map1) Deposited 2022-12-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 11 PDB declaration: undecameric |
Chain G
33–238（206 aa）
Chain H
33–238（206 aa）
|
Not recorded | UNL UNKNOWN LIGAND × 31 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5；50 mM Tris-HCl pH 7.5, 5 mM MgSO4, 150 mM NaCl, 1 mM DDM, 1 mM DTT
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.76 Å |
| 8FEE Structure of Mce1 transporter from Mycobacterium smegmatis in the absence of LucB (Map2) Deposited 2022-12-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 10 PDB declaration: decameric |
Chain G
33–238（206 aa）
Chain H
33–238（206 aa）
|
Not recorded | UNL UNKNOWN LIGAND × 31 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5；50 mM Tris-HCl pH 7.5, 5 mM MgSO4, 150 mM NaCl, 1 mM DDM, 1 mM DTT
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.90 Å |
| 8FEF Structure of Mce1 transporter from Mycobacterium smegmatis (Map0) Deposited 2022-12-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 10 PDB declaration: decameric |
Chain G
33–238（206 aa）
Chain H
33–238（206 aa）
|
Not recorded | UNL UNKNOWN LIGAND × 31 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5；50 mM Tris-HCl pH 7.5, 5 mM MgSO4, 150 mM NaCl, 1 mM DDM, 1 mM DTT
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.71 Å |
| 8G0I High Affinity nanobodies against GFP Deposited 2023-01-31 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | CL CHLORIDE ION × 2 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；294 K；0.2 M potassium chloride, 20% (w/v) PEG3350
|
Resolution 2.20 Å R-free 0.241 |
| 8IYY Single excitation and two emissions pH sensor protein(SITE-pHorin)_pH7.0 Deposited 2023-04-06 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：C48S, F64L, S65T, S72A, N146F, H148G, M153T, V163A, S175G, T203C, A206K, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；291 K；14% PEG 8000, 100 mm MgCl2, 100 mm HEPES PH 7.0
|
Resolution 2.30 Å R-free 0.227 |
| 8IYZ mTurquoise2 S65T Deposited 2023-04-06 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：F64L, S65T, Y66W, S72A, N146F, H148D, M153T, V163A, S175G, A206K, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.5；291 K；20% PEG 8000, 100 mM MgCl2, 100 mM HEPES PH 6.5
|
Resolution 1.99 Å R-free 0.221 |
| 8IZ0 mTurquoise2 W66Y Deposited 2023-04-06 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：F64L,S72A,N146F,H148D,M153T,V163A,S175G,A206K,H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.5；291 K；10% PEG 8000, 100 mm MgCl2, 100 mm HEPES PH 6.5
|
Resolution 2.10 Å R-free 0.199 |
| 8IZ1 Single excitation and two emissions pH sensor protein (SITE-pHorin)_C203E_pH5.0 Deposited 2023-04-06 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：C48S, F64L, S65T, S72A, N146F, H148G, M153T, V163A, S175G, T203E, A206K, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.5；291 K；20% PEG 6000, 100 mm MgCl2, 100 mm Citrate Acid pH 5.0
|
Resolution 1.66 Å R-free 0.220 |
| 8IZ2 Single excitation and two emissions pH sensor protein (SITE-pHorin)_C203E_pH8.0 Deposited 2023-04-06 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：C48S, F64L, S65T, S72A, N146F, H148G, M153T, V163A, S175G, T203E, A206K, H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8；291 K；PEG 8000, MgCl2, Tris-HCl
|
Resolution 1.57 Å R-free 0.180 |
| 8IZ3 Single excitation and two emissions pH sensor protein(SITE-pHorin)_pH5.5 Deposited 2023-04-06 | Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：C48S,F64L,S72A,S65T,N146F,H148G,M153T,V163A,S175G,T203C,A206K,H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.5；291 K；0.1M Bis-tris pH5.5, 25%(w/v) PEG3350
|
Resolution 2.18 Å R-free 0.247 |
| 8J0J AtSLAC1 8D mutant in closed state Deposited 2023-04-11 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 3 PDB declaration: trimeric |
Chain A
1–238（238 aa）
Chain B
1–238（238 aa）
Chain C
1–238（238 aa）
|
Mutation：S59D,T62D,S65D,S86D,S107D,S124D,S146D,S152D,S595R,Y604N,F629L,S630T,Q645R,F664S,N670T,Y710F,M718T,V728A,I736V,A771V Mutation：S59D,T62D,S65D,S86D,S107D,S124D,S146D,S152D,S595R,Y604N,F629L,S630T,Q645R,F664S,N670T,Y710F,M718T,V728A,I736V,A771V Mutation：S59D,T62D,S65D,S86D,S107D,S124D,S146D,S152D,S595R,Y604N,F629L,S630T,Q645R,F664S,N670T,Y710F,M718T,V728A,I736V,A771V | CL CHLORIDE ION × 3 Y01 CHOLESTEROL HEMISUCCINATE × 3 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.70 Å |
| 8J1E AtSLAC1 in open state Deposited 2023-04-12 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 3 PDB declaration: trimeric |
Chain A
1–238（238 aa）
Chain B
1–238（238 aa）
Chain C
1–238（238 aa）
|
Mutation：S595R,Y604N,F629L,S630T,Q645R,F664S,N670T,Y710F,M718T,V728A,I736V,A771V Mutation：S595R,Y604N,F629L,S630T,Q645R,F664S,N670T,Y710F,M718T,V728A,I736V,A771V Mutation：S595R,Y604N,F629L,S630T,Q645R,F664S,N670T,Y710F,M718T,V728A,I736V,A771V | Y01 CHOLESTEROL HEMISUCCINATE × 3 CL CHLORIDE ION × 6 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.84 Å |
| 8JKC Crystal structure of the Green fluorescent protein SE_A277 variant at pH 4.5 Deposited 2023-06-01 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；0.1M sodium acetate pH 4.5, 2.2M Sodium Chloride
|
Resolution 1.95 Å R-free 0.246 |
| 8JKC Crystal structure of the Green fluorescent protein SE_A277 variant at pH 4.5 Deposited 2023-06-01 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；0.1M sodium acetate pH 4.5, 2.2M Sodium Chloride
|
Resolution 1.95 Å R-free 0.246 |
| 8JKC Crystal structure of the Green fluorescent protein SE_A277 variant at pH 4.5 Deposited 2023-06-01 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；0.1M sodium acetate pH 4.5, 2.2M Sodium Chloride
|
Resolution 1.95 Å R-free 0.246 |
| 8JKC Crystal structure of the Green fluorescent protein SE_A277 variant at pH 4.5 Deposited 2023-06-01 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 4 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain D
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；298 K；0.1M sodium acetate pH 4.5, 2.2M Sodium Chloride
|
Resolution 1.95 Å R-free 0.246 |
| 8JKG Crystal structure of the Green fluorescent protein SE_A277 variant at pH 5.5 Deposited 2023-06-01 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.5；298 K；0.1M sodium acetate pH 5.5), 2.2M Sodium Chloride
|
Resolution 2.20 Å R-free 0.230 |
| 8JKG Crystal structure of the Green fluorescent protein SE_A277 variant at pH 5.5 Deposited 2023-06-01 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.5；298 K；0.1M sodium acetate pH 5.5), 2.2M Sodium Chloride
|
Resolution 2.20 Å R-free 0.230 |
| 8JKG Crystal structure of the Green fluorescent protein SE_A277 variant at pH 5.5 Deposited 2023-06-01 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.5；298 K；0.1M sodium acetate pH 5.5), 2.2M Sodium Chloride
|
Resolution 2.20 Å R-free 0.230 |
| 8JKG Crystal structure of the Green fluorescent protein SE_A277 variant at pH 5.5 Deposited 2023-06-01 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 4 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain D
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.5；298 K；0.1M sodium acetate pH 5.5), 2.2M Sodium Chloride
|
Resolution 2.20 Å R-free 0.230 |
| 8JKI Crystal structure of the Green fluorescent protein SE_A277 variant at pH 7.5 Deposited 2023-06-01 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.1M HEPES pH 7.5, 2.5M sodium chloride, 12% PEG 1500, 2.2M sodium chloride
|
Resolution 2.10 Å R-free 0.265 |
| 8JKI Crystal structure of the Green fluorescent protein SE_A277 variant at pH 7.5 Deposited 2023-06-01 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.1M HEPES pH 7.5, 2.5M sodium chloride, 12% PEG 1500, 2.2M sodium chloride
|
Resolution 2.10 Å R-free 0.265 |
| 8JKI Crystal structure of the Green fluorescent protein SE_A277 variant at pH 7.5 Deposited 2023-06-01 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.1M HEPES pH 7.5, 2.5M sodium chloride, 12% PEG 1500, 2.2M sodium chloride
|
Resolution 2.10 Å R-free 0.265 |
| 8JKI Crystal structure of the Green fluorescent protein SE_A277 variant at pH 7.5 Deposited 2023-06-01 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 4 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain D
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.1M HEPES pH 7.5, 2.5M sodium chloride, 12% PEG 1500, 2.2M sodium chloride
|
Resolution 2.10 Å R-free 0.265 |
| 8JL2 Crystal structure of the Green fluorescent protein SE_A277 variant at pH 9.5 Deposited 2023-06-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.1M sodium Tris pH 9.5, 0.8M sodium dihydrogen phosphate
|
Resolution 1.76 Å R-free 0.218 |
| 8JL2 Crystal structure of the Green fluorescent protein SE_A277 variant at pH 9.5 Deposited 2023-06-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.1M sodium Tris pH 9.5, 0.8M sodium dihydrogen phosphate
|
Resolution 1.76 Å R-free 0.218 |
| 8JL2 Crystal structure of the Green fluorescent protein SE_A277 variant at pH 9.5 Deposited 2023-06-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.1M sodium Tris pH 9.5, 0.8M sodium dihydrogen phosphate
|
Resolution 1.76 Å R-free 0.218 |
| 8JL2 Crystal structure of the Green fluorescent protein SE_A277 variant at pH 9.5 Deposited 2023-06-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 4 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain D
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.1M sodium Tris pH 9.5, 0.8M sodium dihydrogen phosphate
|
Resolution 1.76 Å R-free 0.218 |
| 8JL5 Crystal structure of the Green fluorescent protein SEA227D variant at pH 4.5 Deposited 2023-06-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T,A227D Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.1M Citric acid pH 4.5, 20% (w/v) PEG 6000
|
Resolution 1.80 Å R-free 0.222 |
| 8JL5 Crystal structure of the Green fluorescent protein SEA227D variant at pH 4.5 Deposited 2023-06-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T,A227D Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.1M Citric acid pH 4.5, 20% (w/v) PEG 6000
|
Resolution 1.80 Å R-free 0.222 |
| 8JL5 Crystal structure of the Green fluorescent protein SEA227D variant at pH 4.5 Deposited 2023-06-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T,A227D Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.1M Citric acid pH 4.5, 20% (w/v) PEG 6000
|
Resolution 1.80 Å R-free 0.222 |
| 8JL5 Crystal structure of the Green fluorescent protein SEA227D variant at pH 4.5 Deposited 2023-06-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 4 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain D
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T,A227D Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.1M Citric acid pH 4.5, 20% (w/v) PEG 6000
|
Resolution 1.80 Å R-free 0.222 |
| 8JL6 Crystal structure of the Green fluorescent protein SEA227D variant at pH 5.5 Deposited 2023-06-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T,A227D Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.1M Citric acid pH 5.5-6.0, 20% (w/v) PEG 6000
|
Resolution 2.88 Å R-free 0.275 |
| 8JL6 Crystal structure of the Green fluorescent protein SEA227D variant at pH 5.5 Deposited 2023-06-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T,A227D Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.1M Citric acid pH 5.5-6.0, 20% (w/v) PEG 6000
|
Resolution 2.88 Å R-free 0.275 |
| 8JL6 Crystal structure of the Green fluorescent protein SEA227D variant at pH 5.5 Deposited 2023-06-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T,A227D Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.1M Citric acid pH 5.5-6.0, 20% (w/v) PEG 6000
|
Resolution 2.88 Å R-free 0.275 |
| 8JL6 Crystal structure of the Green fluorescent protein SEA227D variant at pH 5.5 Deposited 2023-06-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 4 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain D
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T,A227D Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.1M Citric acid pH 5.5-6.0, 20% (w/v) PEG 6000
|
Resolution 2.88 Å R-free 0.275 |
| 8JL7 Crystal structure of the Green fluorescent protein SEA227D variant at pH 8.0 Deposited 2023-06-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T,A227D Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.1M Tris pH 8.0, 0.2M lithium chloride, 20% PEG 6000
|
Resolution 1.76 Å R-free 0.249 |
| 8JL7 Crystal structure of the Green fluorescent protein SEA227D variant at pH 8.0 Deposited 2023-06-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T,A227D Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.1M Tris pH 8.0, 0.2M lithium chloride, 20% PEG 6000
|
Resolution 1.76 Å R-free 0.249 |
| 8JLL Crystal structure of the Green fluorescent protein SEA227D variant at pH 9.5 Deposited 2023-06-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T,A227D Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.1M CHES pH 9.5, 0.2M sodium chloride, 1.26M ammonium sulfate
|
Resolution 2.69 Å R-free 0.282 |
| 8JLL Crystal structure of the Green fluorescent protein SEA227D variant at pH 9.5 Deposited 2023-06-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T,A227D Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.1M CHES pH 9.5, 0.2M sodium chloride, 1.26M ammonium sulfate
|
Resolution 2.69 Å R-free 0.282 |
| 8JLL Crystal structure of the Green fluorescent protein SEA227D variant at pH 9.5 Deposited 2023-06-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T,A227D Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.1M CHES pH 9.5, 0.2M sodium chloride, 1.26M ammonium sulfate
|
Resolution 2.69 Å R-free 0.282 |
| 8JLL Crystal structure of the Green fluorescent protein SEA227D variant at pH 9.5 Deposited 2023-06-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 4 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain D
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204T,A206T,A227D Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.1M CHES pH 9.5, 0.2M sodium chloride, 1.26M ammonium sulfate
|
Resolution 2.69 Å R-free 0.282 |
| 8JLM Crystal structure of the Green fluorescent protein SET203EF223DA227 variant at pH 4.5 Deposited 2023-06-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204E,A206T,F223D Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.1M acetate pH 4.5, 25% (w/v) PEG 1500, 30% (w/v) MPD
|
Resolution 1.85 Å R-free 0.241 |
| 8JLS Crystal structure of the Green fluorescent protein SET203EF223DA227 variant at pH 6.0 Deposited 2023-06-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204E,A206T,F223D Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.1M acetate pH 6.0, 25% (w/v) PEG 1500, 30% (w/v) MPD
|
Resolution 1.45 Å R-free 0.203 |
| 8JLT Crystal structure of the Green fluorescent protein SET203EF223DA227 variant at pH 7.0 Deposited 2023-06-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204E,A206T,F223D Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.1M Imidazole pH 7.0, 40% (w/v) Isopropanol, 15% (w/v) PEG 8000
|
Resolution 1.94 Å R-free 0.229 |
| 8JLT Crystal structure of the Green fluorescent protein SET203EF223DA227 variant at pH 7.0 Deposited 2023-06-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204E,A206T,F223D Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.1M Imidazole pH 7.0, 40% (w/v) Isopropanol, 15% (w/v) PEG 8000
|
Resolution 1.94 Å R-free 0.229 |
| 8JLU Crystal structure of the Green fluorescent protein SET203EF223DA227 variant at pH 8.5 Deposited 2023-06-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204E,A206T,F223D Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.1M Tris pH 8.5, 0.1M Magnesium chloride, 25% (w/v) PEG 33
|
Resolution 2.09 Å R-free 0.245 |
| 8JLU Crystal structure of the Green fluorescent protein SET203EF223DA227 variant at pH 8.5 Deposited 2023-06-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204E,A206T,F223D Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.1M Tris pH 8.5, 0.1M Magnesium chloride, 25% (w/v) PEG 33
|
Resolution 2.09 Å R-free 0.245 |
| 8JLU Crystal structure of the Green fluorescent protein SET203EF223DA227 variant at pH 8.5 Deposited 2023-06-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204E,A206T,F223D Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.1M Tris pH 8.5, 0.1M Magnesium chloride, 25% (w/v) PEG 33
|
Resolution 2.09 Å R-free 0.245 |
| 8JLU Crystal structure of the Green fluorescent protein SET203EF223DA227 variant at pH 8.5 Deposited 2023-06-02 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 4 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain D
1–238（238 aa）
|
Mutation：F64L,Q80R,S147D,N149Q,V163A,S175G,S202F,Q204E,A206T,F223D Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；0.1M Tris pH 8.5, 0.1M Magnesium chloride, 25% (w/v) PEG 33
|
Resolution 2.09 Å R-free 0.245 |
| 8JZU SLC15A4_TASL complex Deposited 2023-07-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
1–238（238 aa）
|
Mutation：M21V,F64L,S65T,A206K,H231L | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.05 Å |
| 8K4S CryoEM structure of Gq coupled MRGPRX4 with agonist DCA-3P Deposited 2023-07-20 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 5 PDB declaration: pentameric |
Chain E
2–235（234 aa）
|
Not recorded | JW0 (4~{R})-4-[(3~{R},5~{R},8~{R},9~{S},10~{S},12~{S},13~{R},14~{S},17~{R})-10,13-dimethyl-12-oxidanyl-3-phosphonooxy-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1~{H}-cyclopenta[a]phenanthren-17-yl]pentanoic acid × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.90 Å |
| 8KEX CryoEM structure of Gq coupled MRGPRX4 with agonist DCA-3P, local Deposited 2023-08-14 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain E
2–235（234 aa）
|
Not recorded | JW0 (4~{R})-4-[(3~{R},5~{R},8~{R},9~{S},10~{S},12~{S},13~{R},14~{S},17~{R})-10,13-dimethyl-12-oxidanyl-3-phosphonooxy-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1~{H}-cyclopenta[a]phenanthren-17-yl]pentanoic acid × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.20 Å |
| 8OTS OCT4 and MYC-MAX co-bound to a nucleosome Deposited 2023-04-21 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 11 PDB declaration: tridecameric |
Chain K
2–238（237 aa）
|
Not recorded | PTD PENTANEDIAL × 8 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.30 Å |
| 8OVN X-ray structure of the SF-iGluSnFR-S72A Deposited 2023-04-26 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
147–238（92 aa）
Chain A
1–148（148 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | CIT CITRIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；293 K；1.5 M tri-sodium citrate pH 6.5
|
Resolution 2.60 Å R-free 0.253 |
| 8OVO X-ray structure of the SF-iGluSnFR-S72A in complex with L-aspartate Deposited 2023-04-26 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
147–238（92 aa）
Chain A
1–148（148 aa）
Chain B
147–238（92 aa）
Chain B
1–148（148 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | ASP ASPARTIC ACID × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；293 K；0.2 M lithium acetate, 21% (m/v) PEG 3350, 20 mM L-aspartate
|
Resolution 1.70 Å R-free 0.220 |
| 8OVP X-ray structure of the iAspSnFR in complex with L-aspartate Deposited 2023-04-26 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
147–238（92 aa）
Chain A
1–148（148 aa）
Chain B
147–238（92 aa）
Chain B
1–148（148 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | ASP ASPARTIC ACID × 2 ACT ACETATE ION × 2 MG MAGNESIUM ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；293 K；0.2 M magnesium acetate, 18% (m/v) PEG 3350, 40 mM L-aspartate
|
Resolution 1.70 Å R-free 0.202 |
| 8OVY Structure of analogue of superfolded GFP Deposited 2023-04-26 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；291 K；PEG 3350/PEG 1K/MPD (1:1:1) 37.5%, Bicine/Trizma 0.1 M pH 8.5, Morpheus III Alkaloids 0.8% w/v, Morpheus Alcohols 0.12 M
|
Resolution 1.54 Å R-free 0.214 |
| 8OVY Structure of analogue of superfolded GFP Deposited 2023-04-26 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；291 K；PEG 3350/PEG 1K/MPD (1:1:1) 37.5%, Bicine/Trizma 0.1 M pH 8.5, Morpheus III Alkaloids 0.8% w/v, Morpheus Alcohols 0.12 M
|
Resolution 1.54 Å R-free 0.214 |
| 8PKO The ERAD misfolded glycoprotein checkpoint complex from Chaetomium thermophilum (EDEM:PDI heterodimer). Deposited 2023-06-27 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
6–238（233 aa）
|
Mutation：N-term truncation and GFP fusion | CA CALCIUM ION × 1 THJ THIOSULFATE × 1 NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 2 MAN alpha-D-mannopyranose × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7；Micro SEC buffer: 150 mM NaCl, 20 mM MES pH 7.0, 1 mM CaCl2
cryo-EM vitrification conditions
Cryogen ETHANE；Blotting time 3 s, waiting time 30 s
Sample volume 3 uL, blot force 10
|
Resolution 2.60 Å |
| 8QWJ Structure of GFP variant Deposited 2023-10-19 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；291 K；Fusion screen from Molecular Dimension, condition E10
30% PEG 20K/PEG 500 MME (1:2), 0.1 M Bicine/Trizma pH 8.5, 1.5% Morpheus III Vitamins , 1.2% (w/v) Morpheus III Cholic acids
|
Resolution 1.50 Å R-free 0.278 |
| 8SFS High Affinity nanobodies against GFP Deposited 2023-04-11 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | NH4 AMMONIUM ION × 6 GOL GLYCEROL × 6 CL CHLORIDE ION × 1 SO4 SULFATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；294 K；0.1 M HEPES pH 7.5, 1.26 M ammonium sulphate
|
Resolution 2.37 Å R-free 0.218 |
| 8SFS High Affinity nanobodies against GFP Deposited 2023-04-11 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | NH4 AMMONIUM ION × 5 GOL GLYCEROL × 4 CL CHLORIDE ION × 3 SO4 SULFATE ION × 4 NA SODIUM ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；294 K；0.1 M HEPES pH 7.5, 1.26 M ammonium sulphate
|
Resolution 2.37 Å R-free 0.218 |
| 8SFV High affinity nanobodies to GFP Deposited 2023-04-11 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | GOL GLYCEROL × 3 SO4 SULFATE ION × 5 NA SODIUM ION × 11 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；294 K；0.2 M lithium sulphate, 0.1 M tris pH 7.0, 1 M potassium sodium tartrate
|
Resolution 1.83 Å R-free 0.206 |
| 8SFX High Affinity nanobodies against GFP Deposited 2023-04-11 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | GOL GLYCEROL × 3 MLT D-MALATE × 1 NA SODIUM ION × 7 PO4 PHOSPHATE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；291 K；1 M bis-tris propane pH 7.0, 1.2 M DL-malic acid pH 7.0
|
Resolution 1.95 Å R-free 0.228 |
| 8SFX High Affinity nanobodies against GFP Deposited 2023-04-11 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | GOL GLYCEROL × 2 MLT D-MALATE × 1 NA SODIUM ION × 12 PO4 PHOSPHATE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；291 K；1 M bis-tris propane pH 7.0, 1.2 M DL-malic acid pH 7.0
|
Resolution 1.95 Å R-free 0.228 |
| 8SFZ High Affinity nanobodies against GFP Deposited 2023-04-11 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain D
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | NA SODIUM ION × 1 K POTASSIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；291 K；0.2 M potassium formate pH 7.3, 20% (w/v) PEG335
|
Resolution 1.90 Å R-free 0.231 |
| 8SFZ High Affinity nanobodies against GFP Deposited 2023-04-11 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain F
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | NA SODIUM ION × 1 K POTASSIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；291 K；0.2 M potassium formate pH 7.3, 20% (w/v) PEG335
|
Resolution 1.90 Å R-free 0.231 |
| 8SFZ High Affinity nanobodies against GFP Deposited 2023-04-11 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain E
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | K POTASSIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；291 K；0.2 M potassium formate pH 7.3, 20% (w/v) PEG335
|
Resolution 1.90 Å R-free 0.231 |
| 8SG3 High Affinity nanobodies against GFP Deposited 2023-04-11 | Different construct Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；294 K；0.2 M sodium potassium phosphate pH 6.2, 2.5 M sodium chloride
|
Resolution 3.11 Å R-free 0.303 |
| 8SLC High Affinity nanobodies against GFP Deposited 2023-04-21 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | GOL GLYCEROL × 2 CL CHLORIDE ION × 3 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；291 K；0.1 M sodium acetate pH 4.6, 2 M sodium formate
|
Resolution 2.97 Å R-free 0.241 |
| 8SLC High Affinity nanobodies against GFP Deposited 2023-04-21 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | GOL GLYCEROL × 2 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；291 K；0.1 M sodium acetate pH 4.6, 2 M sodium formate
|
Resolution 2.97 Å R-free 0.241 |
| 8SMU Integral fusion of the HtaA CR2 domain from Corynebacterium diphtheriae within EGFP Deposited 2023-04-26 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–39（39 aa）
Chain A
40–238（199 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 GOL GLYCEROL × 7 1PE PENTAETHYLENE GLYCOL × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.4；298 K；1.9 M ammonium sulfate, 0.1 M sodium cacodylate trihydrate, 0.2 M sodium chloride
|
Resolution 2.45 Å R-free 0.233 |
| 8SMU Integral fusion of the HtaA CR2 domain from Corynebacterium diphtheriae within EGFP Deposited 2023-04-26 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
1–39（39 aa）
Chain B
40–238（199 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 GOL GLYCEROL × 4 1PE PENTAETHYLENE GLYCOL × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.4；298 K；1.9 M ammonium sulfate, 0.1 M sodium cacodylate trihydrate, 0.2 M sodium chloride
|
Resolution 2.45 Å R-free 0.233 |
| 8SMU Integral fusion of the HtaA CR2 domain from Corynebacterium diphtheriae within EGFP Deposited 2023-04-26 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
1–39（39 aa）
Chain C
40–238（199 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 GOL GLYCEROL × 7 1PE PENTAETHYLENE GLYCOL × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.4；298 K；1.9 M ammonium sulfate, 0.1 M sodium cacodylate trihydrate, 0.2 M sodium chloride
|
Resolution 2.45 Å R-free 0.233 |
| 8SMU Integral fusion of the HtaA CR2 domain from Corynebacterium diphtheriae within EGFP Deposited 2023-04-26 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain D
1–39（39 aa）
Chain D
40–238（199 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 GOL GLYCEROL × 5 1PE PENTAETHYLENE GLYCOL × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6.4；298 K；1.9 M ammonium sulfate, 0.1 M sodium cacodylate trihydrate, 0.2 M sodium chloride
|
Resolution 2.45 Å R-free 0.233 |
| 8SYG Cryo-EM structure of tetradecameric hub domain of CaMKII alpha Deposited 2023-05-25 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 14 PDB declaration: tetradecameric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
Chain D
2–238（237 aa）
Chain E
2–238（237 aa）
Chain F
2–238（237 aa）
Chain G
2–238（237 aa）
Chain H
2–238（237 aa）
Chain I
2–238（237 aa）
Chain J
2–238（237 aa）
Chain K
2–238（237 aa）
Chain L
2–238（237 aa）
Chain M
2–238（237 aa）
Chain N
2–238（237 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.60 Å |
| 8T15 Cryo-EM structure of dodecameric hub domain of CaMKII alpha Deposited 2023-06-01 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 12 PDB declaration: dodecameric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
Chain D
2–238（237 aa）
Chain E
2–238（237 aa）
Chain F
2–238（237 aa）
Chain G
2–238（237 aa）
Chain H
2–238（237 aa）
Chain I
2–238（237 aa）
Chain J
2–238（237 aa）
Chain K
2–238（237 aa）
Chain L
2–238（237 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.70 Å |
| 8T17 Cryo-EM structure of tetradecameric hub domain of CaMKII beta Deposited 2023-06-02 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 14 PDB declaration: tetradecameric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
Chain D
2–238（237 aa）
Chain E
2–238（237 aa）
Chain F
2–238（237 aa）
Chain G
2–238（237 aa）
Chain H
2–238（237 aa）
Chain I
2–238（237 aa）
Chain J
2–238（237 aa）
Chain K
2–238（237 aa）
Chain L
2–238（237 aa）
Chain M
2–238（237 aa）
Chain N
2–238（237 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.60 Å |
| 8T18 Cryo-EM structure of dodecameric hub domain of CaMKII beta Deposited 2023-06-02 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 12 PDB declaration: dodecameric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
Chain D
2–238（237 aa）
Chain E
2–238（237 aa）
Chain F
2–238（237 aa）
Chain G
2–238（237 aa）
Chain H
2–238（237 aa）
Chain I
2–238（237 aa）
Chain J
2–238（237 aa）
Chain K
2–238（237 aa）
Chain L
2–238（237 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.60 Å |
| 8T6K Cryo-EM structure of tetradecameric CaMKII beta holoenzyme T287A T306A T307A Deposited 2023-06-16 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 14 PDB declaration: tetradecameric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
Chain D
2–238（237 aa）
Chain E
2–238（237 aa）
Chain F
2–238（237 aa）
Chain G
2–238（237 aa）
Chain H
2–238（237 aa）
Chain I
2–238（237 aa）
Chain J
2–238（237 aa）
Chain K
2–238（237 aa）
Chain L
2–238（237 aa）
Chain M
2–238（237 aa）
Chain N
2–238（237 aa）
|
Mutation：T287A T306A T307A Mutation：T287A T306A T307A Mutation：T287A T306A T307A Mutation：T287A T306A T307A Mutation：T287A T306A T307A Mutation：T287A T306A T307A Mutation：T287A T306A T307A Mutation：T287A T306A T307A Mutation：T287A T306A T307A Mutation：T287A T306A T307A Mutation：T287A T306A T307A Mutation：T287A T306A T307A Mutation：T287A T306A T307A Mutation：T287A T306A T307A | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å |
| 8T6L Cryo-EM structure of rat cardiac sodium channel NaV1.5 with batrachotoxin analog BTX-B Deposited 2023-06-16 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：A33T,G214D | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 3 LBN 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine × 10 Y01 CHOLESTEROL HEMISUCCINATE × 11 9Z9 (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en × 2 YIJ (1R)-1-[(5aR,7aR,9R,11aS,11bS,12R,13aR)-9,12-dihydroxy-2,11a-dimethyl-1,2,3,4,7a,8,9,10,11,11a,12,13-dodecahydro-7H-9,11b-epoxy-13a,5a-prop[1]enophenanthro[2,1-f][1,4]oxazepin-14-yl]ethyl benzoate × 2 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.30 Å |
| 8T6Q Cryo-EM structure of dodecameric CaMKII beta holoenzyme T287A T306A T307A Deposited 2023-06-16 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 12 PDB declaration: dodecameric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
Chain D
2–238（237 aa）
Chain F
2–238（237 aa）
Chain G
2–238（237 aa）
Chain H
2–238（237 aa）
Chain I
2–238（237 aa）
Chain J
2–238（237 aa）
Chain K
2–238（237 aa）
Chain L
2–238（237 aa）
Chain N
2–238（237 aa）
|
Mutation：T287A,T306A,T307A Mutation：T287A,T306A,T307A Mutation：T287A,T306A,T307A Mutation：T287A,T306A,T307A Mutation：T287A,T306A,T307A Mutation：T287A,T306A,T307A Mutation：T287A,T306A,T307A Mutation：T287A,T306A,T307A Mutation：T287A,T306A,T307A Mutation：T287A,T306A,T307A Mutation：T287A,T306A,T307A Mutation：T287A,T306A,T307A | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.50 Å |
| 8TLM Structure of a class A GPCR/Fab complex Deposited 2023-07-27 | Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
2–238（237 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.90 Å |
| 8VDP Cryogenic electron microscopy model of full-length talin without FABD Deposited 2023-12-17 | Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å |
| 8VDQ Cryogenic electron microscopy model of full-length talin Deposited 2023-12-17 | Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 5.50 Å |
| 8W2L TRPM7 structure in complex with anticancer agent CCT128930 in closed state Deposited 2024-02-20 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 4 PDB declaration: tetrameric |
Chain A
2–238（237 aa）
Fragment：residues 3-1280 of the TRPM7 channel
Chain B
2–238（237 aa）
Fragment：residues 3-1280 of the TRPM7 channel
Chain C
2–238（237 aa）
Fragment：residues 3-1280 of the TRPM7 channel
Chain D
2–238（237 aa）
Fragment：residues 3-1280 of the TRPM7 channel
|
Not recorded | POV (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate × 52 CLR CHOLESTEROL × 4 M05 4-(4-chlorobenzyl)-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-4-aminium × 4 DU0 2-[2-[(1~{S},2~{S},4~{S},5'~{R},6~{R},7~{S},8~{R},9~{S},12~{S},13~{R},16~{S})-5',7,9,13-tetramethylspiro[5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icos-18-ene-6,2'-oxane]-16-yl]oxyethyl]propane-1,3-diol × 4 CA CALCIUM ION × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.45 Å |
| 8WG3 mouse TMEM63b in LMNG-CHS micelle Deposited 2023-09-20 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：F64L,S65T,A206K,H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | Y01 CHOLESTEROL HEMISUCCINATE × 3 LBN 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å |
| 8WG4 mouse TMEM63b in DDM-CHS micelle with YN9303-24 Fab Deposited 2023-09-20 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Mutation：F64L,S65T,A206K,H231L Non-standard monomer：Yes (specific site not provided by mmCIF) | LBN 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine × 1 Y01 CHOLESTEROL HEMISUCCINATE × 7 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.50 Å |
| 8X9P HURP (428-534)-alpha-tubulin-beta-tubulin complex Deposited 2023-11-30 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 3 PDB declaration: trimeric |
Chain C
2–217（216 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.54 Å |
| 8XTW Structure of human VAChT in complex with acetylcholine Deposited 2024-01-12 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–229（228 aa）
|
Mutation：S30R,Y39N,F64L,S65T,Q80R,F99S,N105T,Y145F,M153T,V163A,I171V,A206V | ACH ACETYLCHOLINE × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.30 Å |
| 8XTX Structure of human VAChT in an apo conformation Deposited 2024-01-12 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–229（228 aa）
|
Mutation：S30R,Y39N,F64L,S65T,Q80R,F99S,N105T,Y145F,M153T,V163A,I171V,A206V | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å |
| 8XTY Structure of human VAChT in complex with vesamicol Deposited 2024-01-12 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–229（228 aa）
|
Mutation：S30R,Y39N,F64L,S65T,Q80R,F99S,N105T,Y145F,M153T,V163A,I171V,A206V | A1LWL vesamicol × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.70 Å |
| 8Y8V Cryo-EM structure of AQP7 in POPC nanodisc Deposited 2024-02-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 4 PDB declaration: tetrameric |
Chain A
1–238（238 aa）
|
Not recorded | P5S O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine × 4 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.49 Å |
| 8Y8V Cryo-EM structure of AQP7 in POPC nanodisc Deposited 2024-02-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 2 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Not recorded | P5S O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.49 Å |
| 8Y8V Cryo-EM structure of AQP7 in POPC nanodisc Deposited 2024-02-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 3 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Not recorded | P5S O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.49 Å |
| 8YA0 Structure of the SecA-SecY complex with the substrate FtsQ-LacY(+7C) Deposited 2024-02-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 7 PDB declaration: heptameric |
Chain G
3–229（227 aa）
|
Mutation：Q80R, F99S, M153T, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) | MG MAGNESIUM ION × 1 BEF BERYLLIUM TRIFLUORIDE ION × 1 ADP ADENOSINE-5'-DIPHOSPHATE × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.97 Å |
| 8YA2 Structure of the SecA-SecY complex with the substrate FtsQ-LacY(+20C) Deposited 2024-02-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 6 PDB declaration: hexameric |
Chain G
3–229（227 aa）
|
Mutation：Q80R, F99S, M153T, V163A Non-standard monomer：Yes (specific site not provided by mmCIF) | MG MAGNESIUM ION × 1 BEF BERYLLIUM TRIFLUORIDE ION × 1 ADP ADENOSINE-5'-DIPHOSPHATE × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.84 Å |
| 8ZUP Crystal structure of the F99S/M153T/V163A/T203V/E222Q variant of GFP at pH 8.5 Deposited 2024-06-10 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–231（230 aa）
|
Mutation：F99S,M153T,V163A,T203V,E222Q Non-standard monomer：Yes (specific site not provided by mmCIF) | MG MAGNESIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 5；308 K；PEG 4000, magnesium chloride, MES-NaOH buffer (pH 5.0)
|
Resolution 1.20 Å R-free 0.173 |
| 8ZUQ Crystal structure of the F99S/M153T/V163A/T203I/E222Q variant of GFP at pH 8.5 Deposited 2024-06-10 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–231（230 aa）
|
Mutation：F99S,M153T,V163A,T203I,E222Q Non-standard monomer：Yes (specific site not provided by mmCIF) | MG MAGNESIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；308 K；PEG 4000, magnesium chloride, MES-NaOH buffer (pH 5.0)
|
Resolution 1.48 Å R-free 0.193 |
| 8ZUR Crystal structure of the F99S/M153T/V163A/T203V/E222Q variant of GFP at pH 5.0 Deposited 2024-06-10 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–231（230 aa）
|
Mutation：F99S,M153T,V163A,T203V,E222Q Non-standard monomer：Yes (specific site not provided by mmCIF) | CL CHLORIDE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；308 K；PEG 4000, magnesium chloride, MES-NaOH buffer (pH 5.0)
|
Resolution 1.20 Å R-free 0.166 |
| 8ZUS Crystal structure of the F99S/M153T/V163A/T203V variant of GFP at pH 7.5 Deposited 2024-06-10 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–231（230 aa）
|
Mutation：F99S,M153T,V163A,T203V Non-standard monomer：Yes (specific site not provided by mmCIF) | MG MAGNESIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；308 K；PEG 4000, magnesium chloride, MES-NaOH buffer (pH 5.0)
|
Resolution 1.20 Å R-free 0.165 |
| 8ZUT Crystal structure of the F99S/M153T/V163A variant of GFP at pH 8.5 Deposited 2024-06-10 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–231（230 aa）
|
Mutation：F99S,M153T,V163A Non-standard monomer：Yes (specific site not provided by mmCIF) | MG MAGNESIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8；308 K；PEG 4000, magnesium chloride, Tris-HCl buffer (pH 8.5)
|
Resolution 1.48 Å R-free 0.197 |
| 9BOI Cryo-EM structure of human Spns1 in complex with LPC (18:1) Deposited 2024-05-03 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Not recorded | 42H (4R,7R,18Z)-4,7-dihydroxy-N,N,N-trimethyl-10-oxo-3,5,9-trioxa-4-phosphaheptacos-18-en-1-aminium 4-oxide × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 5.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.22 Å |
| 9C7C Diheteromeric GluN1/GluN2A (delM653) in nanodisc complexed with glycine, glutamate, and GNE-4123, open conformation Deposited 2024-06-10 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
5–238（234 aa）
Chain B
2–238（237 aa）
Chain C
5–238（234 aa）
Chain D
2–238（237 aa）
|
Not recorded | A1AUV 4-cyclohexyl-N-[(8R)-2-cyclopropyl-7-hydroxy-5-methyl[1,2,4]triazolo[1,5-a]pyrimidin-6-yl]benzene-1-sulfonamide × 2 NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 24 HP6 HEPTANE × 1 Y01 CHOLESTEROL HEMISUCCINATE × 8 GLY GLYCINE × 2 D12 DODECANE × 2 GLU GLUTAMIC ACID × 2 D10 DECANE × 2 HEX HEXANE × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å |
| 9C7E Diheteromeric GluN1/GluN2A (delM653) in nanodisc complex with glycine, glutamate, and GNE-4123, open conformation, C2 symmetry Deposited 2024-06-10 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
5–238（234 aa）
Chain B
2–238（237 aa）
Chain C
5–238（234 aa）
Chain D
2–238（237 aa）
|
Not recorded | A1AUV 4-cyclohexyl-N-[(8R)-2-cyclopropyl-7-hydroxy-5-methyl[1,2,4]triazolo[1,5-a]pyrimidin-6-yl]benzene-1-sulfonamide × 2 Y01 CHOLESTEROL HEMISUCCINATE × 6 D12 DODECANE × 2 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.22 Å |
| 9C7P Diheteromeric GluN1/GluN2A (delM653) in digitonin complexed with glycine, glutamate, and GNE-4123 Deposited 2024-06-10 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
Chain D
2–238（237 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.61 Å |
| 9C7Q Diheteromeric NMDA receptor GluN1/GluN2A, in complex with glycine and glutamate Deposited 2024-06-11 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
Chain D
2–238（237 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.05 Å |
| 9C7R Diheteromeric GluN1/GluN2A (M817V) in digitonin complexed with glycine, glutamate, and GNE-4123 Deposited 2024-06-11 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
Chain D
2–238（237 aa）
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 15 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.99 Å |
| 9CLA Human Kv1.3 mutant-H451V Deposited 2024-07-10 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 4 PDB declaration: tetrameric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
Chain D
2–238（237 aa）
|
Not recorded | K POTASSIUM ION × 4 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.97 Å |
| 9CLV Human Kv1.3 mutant-P424G Deposited 2024-07-12 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 4 PDB declaration: tetrameric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
Chain D
2–238（237 aa）
|
Not recorded | K POTASSIUM ION × 2 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.18 Å |
| 9CON Human Kv1.3-H451V with A0194009G09 nanobodies conformation 1 Deposited 2024-07-17 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 8 PDB declaration: octameric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
Chain D
2–238（237 aa）
|
Not recorded | K POTASSIUM ION × 4 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.06 Å |
| 9CTY Human Kv1.3-H451V with A0194009G09 nanobodies conformation 2 Deposited 2024-07-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 8 PDB declaration: octameric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
Chain D
2–238（237 aa）
|
Not recorded | K POTASSIUM ION × 4 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.03 Å |
| 9CXT Hemagglutinin A/Hong Kong/1/68 produced in GnTI- cells Deposited 2024-07-31 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 6 PDB declaration: hexameric |
Chain B
1–233（233 aa）
Chain D
1–233（233 aa）
Chain F
1–233（233 aa）
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 18 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4；TBS
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å |
| 9CXU Endo H-treated hemagglutinin A/Hong Kong/1/68 Deposited 2024-07-31 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 6 PDB declaration: hexameric |
Chain B
1–233（233 aa）
Chain D
1–233（233 aa）
Chain F
1–233（233 aa）
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 12 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4；TBS
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.30 Å |
| 9D0Y Map of endoH-treated hemagglutinin A/Sing/INFIMH/16 Deposited 2024-08-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 6 PDB declaration: hexameric |
Chain D
1–233（233 aa）
Chain E
1–233（233 aa）
Chain F
1–233（233 aa）
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 30 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4；TBS
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å |
| 9EBW Chimeric fluorescence biosensor formed from a lactate-binding protein and GFP, bound to lactate Deposited 2024-11-13 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
2–146（145 aa）
Chain A
149–238（90 aa）
Chain B
2–146（145 aa）
Chain B
149–238（90 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | GOL GLYCEROL × 2 LAC LACTIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；296 K；citric acid, PEG 6000, 1,3-propanediol
|
Resolution 2.78 Å R-free 0.285 |
| 9EBW Chimeric fluorescence biosensor formed from a lactate-binding protein and GFP, bound to lactate Deposited 2024-11-13 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain C
2–146（145 aa）
Chain C
149–238（90 aa）
Chain D
2–146（145 aa）
Chain D
149–238（90 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | LAC LACTIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；296 K；citric acid, PEG 6000, 1,3-propanediol
|
Resolution 2.78 Å R-free 0.285 |
| 9EBX Chimeric fluorescence biosensor formed from a lactate-binding protein and GFP Deposited 2024-11-13 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–146（145 aa）
Chain A
149–238（90 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；296 K；magnesium chloride hexahydrate, HEPES, PEG 3350
|
Resolution 2.42 Å R-free 0.280 |
| 9EEF Human Kv1.3 mutant - G427H Deposited 2024-11-19 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 4 PDB declaration: tetrameric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
Chain D
2–238（237 aa）
|
Mutation：G427H Mutation：G427H Mutation：G427H Mutation：G427H | K POTASSIUM ION × 4 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.54 Å |
| 9EI0 Human Kv1.3 mutant - G427H with A0194009G09 nanobodies Deposited 2024-11-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 8 PDB declaration: octameric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
Chain D
2–238（237 aa）
|
Not recorded | K POTASSIUM ION × 4 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.91 Å |
| 9F22 DARPin eGFP complex DP1 (3G190.24) Deposited 2024-04-22 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | EDO 1,2-ETHANEDIOL × 2 BR BROMIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；277.15 K；0.1 M Na acetate pH 5.5, 10% e/v PEG 8K, 10% PEG 1K, 0.2 M KBr
|
Resolution 2.20 Å R-free 0.223 |
| 9F23 DARPin eGFP complex DP2 (2G156) Deposited 2024-04-22 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | A1H87 2-[[(2S)-2-oxidanylpropoxy]methyl]-2-[[(2S)-2-[(2S)-2-oxidanylpropoxy]propoxy]methyl]propane-1,3-diol × 1 EDO 1,2-ETHANEDIOL × 7 NA SODIUM ION × 1 TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；277.15 K；50%pentaerythriol propoxylate
0.1 M Tris, pH 8.0
|
Resolution 1.59 Å R-free 0.212 |
| 9F23 DARPin eGFP complex DP2 (2G156) Deposited 2024-04-22 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain C
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | A1H87 2-[[(2S)-2-oxidanylpropoxy]methyl]-2-[[(2S)-2-[(2S)-2-oxidanylpropoxy]propoxy]methyl]propane-1,3-diol × 1 EDO 1,2-ETHANEDIOL × 8 NA SODIUM ION × 1 TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 3 PXN (2S)-1-[3-{[(2R)-2-hydroxypropyl]oxy}-2,2-bis({[(2R)-2-hydroxypropyl]oxy}methyl)propoxy]propan-2-ol × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；277.15 K；50%pentaerythriol propoxylate
0.1 M Tris, pH 8.0
|
Resolution 1.59 Å R-free 0.212 |
| 9F24 DARPin eGFP complex DP4 (2G71) Deposited 2024-04-22 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；277.15 K；0.1 M Tris, pH 8.5, 8% PEG 20000, 8% PEG 550 MME, 0.2 M KBr
|
Resolution 2.06 Å R-free 0.222 |
| 9F33 Cryo-EM structure of Dopamine 3 Receptor:Go complex bound to bitopic FOB02-04A - Conformation A Deposited 2024-04-24 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 5 PDB declaration: pentameric |
Chain R
2–238（237 aa）
|
Mutation：L119W | A1H9N N-[2-[(1R,2S)-2-[[(2S,5S)-2-(6-azanylpyridin-3-yl)-5-methyl-morpholin-4-yl]methyl]cyclopropyl]ethyl]-1H-indole-2-carboxamide × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.05 Å |
| 9F34 Cryo-EM structure of Dopamine 3 receptor:Go complex bound to bitopic FOB02-04A - Conformation B Deposited 2024-04-24 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 5 PDB declaration: pentameric |
Chain R
2–238（237 aa）
|
Mutation：L119W | A1H9N N-[2-[(1R,2S)-2-[[(2S,5S)-2-(6-azanylpyridin-3-yl)-5-methyl-morpholin-4-yl]methyl]cyclopropyl]ethyl]-1H-indole-2-carboxamide × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.09 Å |
| 9F6Y CryoEM structure of Human Mediator subunit MED23 complexed with phosphorylated Elk-1 transcription factor Deposited 2024-05-02 | Different construct Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
1–238（238 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.98 Å |
| 9FBU X-ray structure of the iGluSnFR3 in complex with L-glutamate Deposited 2024-05-14 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
147–238（92 aa）
Chain A
1–148（148 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | GLU GLUTAMIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；293 K；26% (m/v) PEG 1500
|
Resolution 1.70 Å R-free 0.211 |
| 9FQT Cryo-EM structure of MmCAT1 bound with FrMLV-RBD in the apo inward-open state Deposited 2024-06-17 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
2–238（237 aa）
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 Y01 CHOLESTEROL HEMISUCCINATE × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.50 Å |
| 9FQU Cryo-EM structure of MmCAT1 bound with FrMLV-RBD in the arginine-bound inward-occluded state Deposited 2024-06-17 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
2–238（237 aa）
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 Y01 CHOLESTEROL HEMISUCCINATE × 2 ARG ARGININE × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.79 Å |
| 9FQV Cryo-EM structure of MmCAT1 bound with FrMLV-RBD in the lysine-bound inward-occluded state Deposited 2024-06-17 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
2–238（237 aa）
|
Not recorded | LYS LYSINE × 1 Y01 CHOLESTEROL HEMISUCCINATE × 2 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.95 Å |
| 9FQW Cryo-EM structure of MmCAT1 bound with FrMLV-RBD in the ornithine-bound inward-occluded state Deposited 2024-06-17 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
2–238（237 aa）
|
Not recorded | Y01 CHOLESTEROL HEMISUCCINATE × 2 ORN L-ornithine × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.01 Å |
| 9GU0 Human adult muscle nAChR in resting state in detergent with alpha-bungarotoxin Deposited 2024-09-18 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 11 PDB declaration: 11-meric |
Chain E
2–238（237 aa）
|
Mutation：EGFP insertion between residues R344 and A345 in the M3-M4 intracellular loop | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5；20 mM HEPES pH 7.5, 150 mM NaCl, 0.013% DDM, 0.0013% CHS
cryo-EM vitrification conditions
Cryogen ETHANE；blot time 2s, blot force -10
|
Resolution 2.96 Å |
| 9GU1 Human adult muscle nAChR in resting state in nanodisc with alpha-bungarotoxin Deposited 2024-09-18 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 11 PDB declaration: 11-meric |
Chain E
2–238（237 aa）
|
Mutation：EGFP insertion between residues R344 and A345 in the M3-M4 intracellular loop | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 CU COPPER (II) ION × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5；20 mM HEPES pH 7.5, 150 mM NaCl
cryo-EM vitrification conditions
Cryogen ETHANE；2.5 uL of sample was frozen; blot time 4.5 s, blot force -10
|
Resolution 2.48 Å |
| 9GU2 Human adult muscle nAChR in desensitised state in nanodisc with 100 uM acetylcholine Deposited 2024-09-18 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 9 PDB declaration: nonameric |
Chain E
2–238（237 aa）
|
Mutation：EGFP insertion between residues R344 and A345 in the M3-M4 intracellular loop | ACH ACETYLCHOLINE × 2 NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 CU COPPER (II) ION × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5；20 mM HEPES pH 7.5, 150 mM NaCl
cryo-EM vitrification conditions
Cryogen ETHANE；2.5 ul sample, blot time=6 s, blot force=-10
|
Resolution 2.73 Å |
| 9GU3 Human adult muscle nAChR in desensitised state in nanodisc with 1 mM acetylcholine Deposited 2024-09-18 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 9 PDB declaration: nonameric |
Chain E
2–238（237 aa）
|
Mutation：EGFP insertion between residues R344 and A345 in the M3-M4 intracellular loop | ACH ACETYLCHOLINE × 2 NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5；20 mM HEPES pH 7.5, 150 mM NaCl
cryo-EM vitrification conditions
Cryogen ETHANE；2.5 ul sample, blot time=4 s, blot force=-10
|
Resolution 2.64 Å |
| 9HAA a5b3 GABAA Receptor resting state Deposited 2024-11-02 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 5 PDB declaration: pentameric |
Chain A
1–238（238 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
Chain D
1–238（238 aa）
Chain E
2–238（237 aa）
|
Not recorded | BUA butanoic acid × 2 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 ZN ZINC ION × 1 NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5；20 mM HEPES, 100 mM NaCl, 2 mM Fluorinated Fos-choline 8, 0.005% LMNG, 0.0005% CHS
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.14 Å |
| 9HNQ a5b3 GABAA Receptor bound to GABA and Mb25 in desensitized state in detergent micelles Deposited 2024-12-11 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 6 PDB declaration: hexameric |
Chain A
1–238（238 aa）
Chain B
1–238（238 aa）
Chain C
1–238（238 aa）
Chain D
1–238（238 aa）
Chain E
1–238（238 aa）
|
Not recorded | ABU GAMMA-AMINO-BUTANOIC ACID × 2 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5；20 mM HEPES, 100 mM NaCl, 0.005% LMNG, 0.0005% CHS
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.81 Å |
| 9HNR a5b3 GABAA Receptor in 1 a5 to 4 b3 stoichiometry in desensitized state Deposited 2024-12-11 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 8 PDB declaration: octameric |
Chain A
1–238（238 aa）
Chain B
1–238（238 aa）
Chain C
1–238（238 aa）
Chain D
1–238（238 aa）
Chain E
1–238（238 aa）
|
Not recorded | ABU GAMMA-AMINO-BUTANOIC ACID × 1 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 2 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.17 Å |
| 9HNS a5b3 GABAAR bound to GABA and Mb25 in a desensitized state in saposin nanodiscs after long GABA treatment Deposited 2024-12-11 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 6 PDB declaration: hexameric |
Chain A
1–238（238 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
Chain D
1–238（238 aa）
Chain E
2–238（237 aa）
|
Not recorded | ABU GAMMA-AMINO-BUTANOIC ACID × 2 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å |
| 9HNT a5b3 GABAAR bound to Etomidate, GABA, and Mb25 in a desensitized state in saposin nanodiscs Deposited 2024-12-11 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 6 PDB declaration: hexameric |
Chain A
1–238（238 aa）
Chain D
1–238（238 aa）
|
Not recorded | V8D Etomidate × 2 ABU GAMMA-AMINO-BUTANOIC ACID × 2 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.32 Å |
| 9HUM a5b3 GABAAR bound to GABA and Mb25 in a desensitized state in saposin nanodiscs after short GABA treatment Deposited 2024-12-23 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 6 PDB declaration: hexameric |
Chain A
1–238（238 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
Chain D
1–238（238 aa）
Chain E
2–238（237 aa）
|
Not recorded | ABU GAMMA-AMINO-BUTANOIC ACID × 2 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.35 Å |
| 9J97 Closed structure of human XPR1 Deposited 2024-08-22 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
|
Not recorded | 8PE (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate × 2 CLR CHOLESTEROL × 2 PO4 PHOSPHATE ION × 2 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.30 Å |
| 9J98 Open structure of human XPR1 Deposited 2024-08-22 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
|
Not recorded | 8PE (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate × 2 CLR CHOLESTEROL × 2 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.33 Å |
| 9LK2 monomeric ZYG11B-EloB-EloC + substrate peptide GYIND Deposited 2025-01-15 | Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
2–238（237 aa）
|
Mutation：F821L/S822T/Q837R/F856S/M910T/V920A | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.37 Å |
| 9LK6 dimeric ZYG11B-EloB-EloC + substrate peptide GYIND Deposited 2025-01-16 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 8 PDB declaration: octameric |
Chain A
2–238（237 aa）
Chain D
2–238（237 aa）
|
Mutation：F821L/S822T/Q837R/F856S/M910T/V920A Mutation：F821L/S822T/Q837R/F856S/M910T/V920A | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.27 Å |
| 9NA8 Augmin1345 Extended-body Deposited 2025-02-11 | Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain E
2–238（237 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5；50mM HEPES,150mM KCl,1mM EGTA,1mM MgCl2,10mM betamercaptoethanol
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.50 Å |
| 9NA9 Augmin1345-Extended-Tripod Deposited 2025-02-11 | Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain E
2–238（237 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 5.90 Å |
| 9O58 Zymogen ADAM17-iRhom2 complex bound by the MEDI3622 Fab Deposited 2025-04-09 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain B
2–238（237 aa）
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 6 CA CALCIUM ION × 1 ZN ZINC ION × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.53 Å |
| 9OO6 Human PORCN bound to inhibitor C59 Deposited 2025-05-15 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Not recorded | A1CC5 2-[4-(2-methylpyridin-4-yl)phenyl]-N-[4-(pyridin-3-yl)phenyl]acetamide × 1 AV0 Lauryl Maltose Neopentyl Glycol × 1 ZN ZINC ION × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.39 Å |
| 9OO7 Human PORCN bound to inhibitor ETC159 Deposited 2025-05-15 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Not recorded | ZN ZINC ION × 1 A1CC6 2-(1,3-dimethyl-2,6-dioxo-1,2,3,6-tetrahydro-7H-purin-7-yl)-N-(6-phenylpyridazin-3-yl)acetamide × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.61 Å |
| 9OO8 Apo Human PORCN Deposited 2025-05-15 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Not recorded | ZN ZINC ION × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.32 Å |
| 9OSF The intact LBD state of GluK2/K5 with 5-iodowillardiine and kynurenic acid sodium salt Deposited 2025-05-24 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
2–238（237 aa）
Chain C
2–238（237 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8；20 mM Tris, 300 mM NaCl, 0.35 mM DDM, pH 8.0
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.83 Å |
| 9OSI The intact LBD state of GluK2/K5 with alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) Deposited 2025-05-24 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
2–238（237 aa）
Chain C
2–238（237 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8；20 mM Tris, 300 mM NaCl, 0.35 mM DDM, pH 8.0
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.95 Å |
| 9P3N The open state of zebrafish TRPM5 with 1mM EDTA and 0.5mM CBTA Deposited 2025-06-14 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 4 PDB declaration: tetrameric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
Chain D
2–238（237 aa）
|
Not recorded | CA CALCIUM ION × 4 YUY (2R)-2-(hydroxymethyl)-4-{[(25R)-10alpha,14beta,17beta-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside × 4 YUV (25R)-14beta,17beta-spirost-5-en-3beta-ol × 4 A1CGW 5-chloro-N-[(5-chloro-1,3-thiazol-2-yl)methyl]-1,2-benzothiazol-6-amine × 4 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.50 Å |
| 9P3O Zebrafish TRPM5 with 5mM calcium and 0.5mM CBTA Deposited 2025-06-14 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 4 PDB declaration: tetrameric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
Chain D
2–238（237 aa）
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 CA CALCIUM ION × 8 YUV (25R)-14beta,17beta-spirost-5-en-3beta-ol × 4 A1CGW 5-chloro-N-[(5-chloro-1,3-thiazol-2-yl)methyl]-1,2-benzothiazol-6-amine × 4 YUY (2R)-2-(hydroxymethyl)-4-{[(25R)-10alpha,14beta,17beta-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside × 4 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.92 Å |
| 9P3P Zebrafish TRPM5 with 5mM EGTA and 0.5mM CBTA Deposited 2025-06-14 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 4 PDB declaration: tetrameric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
Chain D
2–238（237 aa）
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 YUY (2R)-2-(hydroxymethyl)-4-{[(25R)-10alpha,14beta,17beta-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside × 4 YUV (25R)-14beta,17beta-spirost-5-en-3beta-ol × 4 A1CGW 5-chloro-N-[(5-chloro-1,3-thiazol-2-yl)methyl]-1,2-benzothiazol-6-amine × 4 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å |
| 9P3T Zebrafish TRPM5 with 5mM calcium and 0.5mM TPPO Deposited 2025-06-14 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 4 PDB declaration: tetrameric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
Chain D
2–238（237 aa）
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 CA CALCIUM ION × 8 YUY (2R)-2-(hydroxymethyl)-4-{[(25R)-10alpha,14beta,17beta-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside × 4 YUV (25R)-14beta,17beta-spirost-5-en-3beta-ol × 4 A1CG5 oxotri(phenyl)-lambda~5~-phosphane × 4 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å |
| 9QBF HER2/ErbB2 extracellular domain (ECD) in compact conformation in complex with trastuzumab (TZB) antibody Deposited 2025-03-02 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：Del1-22,Del1030-1255,C789S,C805S,C965S. | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.80 Å |
| 9QBG HER2/ErbB2 extracellular domain (ECD) in extended conformation in complex with trastuzumab (TZB) antibody Deposited 2025-03-02 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：Del1-22,Del1030-1255,C789S,C805S,C965S. | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.60 Å |
| 9QBH HER2/ErbB2 extracellular domain (ECD) from a near full-length construct solubilized in amphipols. Deposited 2025-03-02 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–238（238 aa）
|
Mutation：Del1-22,Del1030-1255,C789S,C805S,C965S. | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.77 Å |
| 9QKS B subtilis Type VIIb Core Unit (T7bCU) + DUF Deposited 2025-03-20 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 5 PDB declaration: pentameric |
Chain G
7–230（224 aa）
Chain H
7–230（224 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.80 Å |
| 9QNF Connexin-32 (Cx32) in MSP2N2 nanodiscs with POPC Deposited 2025-03-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 12 PDB declaration: 12-meric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
Chain D
2–238（237 aa）
Chain E
2–238（237 aa）
Chain F
2–238（237 aa）
Chain G
2–238（237 aa）
Chain H
2–238（237 aa）
Chain I
2–238（237 aa）
Chain J
2–238（237 aa）
Chain K
2–238（237 aa）
Chain L
2–238（237 aa）
|
Not recorded | POV (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate × 12 CLR CHOLESTEROL × 12 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.16 Å |
| 9QNT Connexin-32 (Cx32) in MSP2N2 nanodiscs with liver polar lipids Deposited 2025-03-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 12 PDB declaration: 12-meric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
Chain D
2–238（237 aa）
Chain E
2–238（237 aa）
Chain F
2–238（237 aa）
Chain G
2–238（237 aa）
Chain H
2–238（237 aa）
Chain I
2–238（237 aa）
Chain J
2–238（237 aa）
Chain K
2–238（237 aa）
Chain L
2–238（237 aa）
|
Not recorded | POV (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate × 12 CLR CHOLESTEROL × 12 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.29 Å |
| 9QXL The structure of ADGRL4 in the active-state Deposited 2025-04-15 | Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
2–238（237 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.14 Å |
| 9RGB M.tuberculosis MmpS5L5-acpM complex Deposited 2025-06-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 9 PDB declaration: nonameric |
Chain D
2–238（237 aa）
Chain E
2–238（237 aa）
Chain F
2–238（237 aa）
|
Not recorded | L9Q (1S)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(octadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate × 3 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8；50 mM HEPES pH 8.0, 150 mM NaCl, 0.004% LMNG
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.20 Å |
| 9RL4 Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL-6 Deposited 2025-06-16 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 20 PDB declaration: 22-meric |
Chain V
2–238（237 aa）
|
Not recorded | PTD PENTANEDIAL × 16 ZN ZINC ION × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.50 Å |
| 9RL5 a5b3 GABAAR bound to Topiramate, GABA, and Mb25 in a desensitized state in saposin nanodiscs Deposited 2025-06-16 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 6 PDB declaration: hexameric |
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
Chain E
2–238（237 aa）
|
Not recorded | ABU GAMMA-AMINO-BUTANOIC ACID × 2 TOR [(3aS,5aR,8aR,8bS)-2,2,7,7-tetramethyltetrahydro-3aH-bis[1,3]dioxolo[4,5-b:4',5'-d]pyran-3a-yl]methyl sulfamate × 2 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å |
| 9RMC Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL+6 class 1 Deposited 2025-06-18 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 20 PDB declaration: 22-meric |
Chain V
2–238（237 aa）
|
Not recorded | ZN ZINC ION × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.20 Å |
| 9RN1 Structure of BAF-nucleosome complex with OCT4-SOX2 at SHL+6 in ADP-bound state, BAF47 bound to ATPase lobe 2 Deposited 2025-06-19 | Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 20 PDB declaration: 22-meric |
Chain V
2–238（237 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 5.90 Å |
| 9RN2 Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL+6 class 2 Deposited 2025-06-19 | Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 19 PDB declaration: 21-meric |
Chain V
2–238（237 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.10 Å |
| 9RPB a5b3 GABAAR bound to GABA, and Mb25 in a desensitized state in saposin nanodiscs, topiramate-free Deposited 2025-06-24 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 6 PDB declaration: hexameric |
Chain A
1–238（238 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
Chain D
1–238（238 aa）
Chain E
2–238（237 aa）
|
Not recorded | ABU GAMMA-AMINO-BUTANOIC ACID × 2 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å |
| 9RPD D. melanogaster Augmin TII N-clamp (GST-fusion) bound to a microtubule, well-defined subset of particles Deposited 2025-06-24 | Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 9 PDB declaration: nonameric |
Chain K
2–238（237 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 6.8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.90 Å |
| 9S0T Superfolder green fluorescent protein (sfGFP) exhibiting p-(phenylazo)-L-phenylalanine (Pap) at position 39 in complex with alpha-cyclodextrin Deposited 2025-07-17 | Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.5；293 K；3 M sodium chloride, 0.1 M sodium acetate
|
Resolution 2.05 Å R-free 0.228 |
| 9S0T Superfolder green fluorescent protein (sfGFP) exhibiting p-(phenylazo)-L-phenylalanine (Pap) at position 39 in complex with alpha-cyclodextrin Deposited 2025-07-17 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Other combination Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
2–238（237 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 4.5；293 K；3 M sodium chloride, 0.1 M sodium acetate
|
Resolution 2.05 Å R-free 0.228 |
| 9S2U 1:1 complex of M.tuberculosis MmpL5 and M.smegmatis AcpM Deposited 2025-07-22 | Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 2 PDB declaration: dimeric |
Chain D
2–238（237 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8；50 mM HEPES pH8.0, 150 mM NaCl, 0.004% LMNG, 50 uM Bedaquiline
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.20 Å |
| 9SDL Cryo-EM structure of PfHT1 bound to 2,5-anhydro-D-mannitol Deposited 2025-08-14 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
|
Not recorded | A1IVP 2.5-anhydro-D-mannitol × 2 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.42 Å |
| 9SYR Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD Deposited 2025-10-13 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 80 PDB declaration: 86-meric |
Chain LN
2–230（229 aa）
|
Not recorded | ZN ZINC ION × 10 COA COENZYME A × 1 GTP GUANOSINE-5'-TRIPHOSPHATE × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 3.55 Å |
| 9T9P Adenosine receptor A2a (A2AR)-beta-lactamase fusion bound to beta-lactamase inhibitory protein II (BLIPII) and ZM241385 Deposited 2025-11-24 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 2 PDB declaration: dimeric |
Chain B
2–238（237 aa）
|
Not recorded | ZMA 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å |
| 9U9D Bipartite Genetically Encoded Biosensor sG-GECO1 Deposited 2025-03-27 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
149–172（24 aa）
Chain B
170–238（69 aa）
Chain B
2–146（145 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) Non-standard monomer：Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；0.2m sodium malonate dibasic monohydrate, 0.1M Bis-Tris propane pH 8.5, 20% w/v PEG 3350
|
Resolution 1.80 Å R-free 0.227 |
| 9VED The cryo-EM structure of mouse Piezo1-MDFI complex Deposited 2025-06-09 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 6 PDB declaration: hexameric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.63 Å |
| 9VEE The cryo-EM structure of human Piezo2-MDFIC2 complex (composite map) Deposited 2025-06-09 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 6 PDB declaration: hexameric |
Chain A
2–238（237 aa）
Chain B
2–238（237 aa）
Chain C
2–238（237 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.36 Å |
| 9VEF The cryo-EM structure of human Piezo2-MDFIC complex (composite map) Deposited 2025-06-09 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 6 PDB declaration: hexameric |
Chain A
2–238（237 aa）
Chain C
2–238（237 aa）
Chain E
2–238（237 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.75 Å |
| 9VUI Cryo-EM structure of the human measles virus RNA-dependent RNA polymerase complex bound to viral protein C Deposited 2025-07-13 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 7 PDB declaration: heptameric |
Chain X
1–238（238 aa）
Chain Y
1–238（238 aa）
|
Not recorded | ZN ZINC ION × 3 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5；300mM NaCl, 25mM HEPES, 1mM TCEP, 6mM MgCl2
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.72 Å |
| 9W1Y DENV2 non-structural protein 1 (NS1) with C-terminal mVenus Conformation 2 Deposited 2025-07-26 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 4 PDB declaration: tetrameric |
Chain A
1–238（238 aa）
Chain B
1–238（238 aa）
Chain a
1–238（238 aa）
Chain b
1–238（238 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 6.10 Å |
| 9W24 DENV2 non-structural protein 1 (NS1) with C-terminal mVenus fusion Deposited 2025-07-26 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 4 PDB declaration: tetrameric |
Chain A
1–238（238 aa）
Chain B
1–238（238 aa）
Chain a
1–238（238 aa）
Chain b
1–238（238 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.80 Å |
| 9W25 DENV2 non-structural protein 1 (NS1) with C-terminal mVenus Conformation 1 Deposited 2025-07-26 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 4 PDB declaration: tetrameric |
Chain A
1–238（238 aa）
Chain B
1–238（238 aa）
Chain a
1–238（238 aa）
Chain b
1–238（238 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 5.30 Å |
| 9W62 Cryo-EM structure of human ABCD3 in inward-facing conformation in the presence of phytanoyl-CoA Deposited 2025-08-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain B
1–238（238 aa）
|
Not recorded | CLR CHOLESTEROL × 4 LBN 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine × 2 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.28 Å |
| 9W63 Cryo-EM structure of C20:5-CoA bound state human ABCD3 in inward-facing conformation Deposited 2025-08-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–238（238 aa）
|
Not recorded | 3IX S-[2-[3-[[(2R)-4-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenethioate × 2 CLR CHOLESTEROL × 10 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.29 Å |
| 9W64 Cryo-EM structure of CHS bound state human ABCD3 in inward-facing conformation Deposited 2025-08-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–238（238 aa）
|
Not recorded | Y01 CHOLESTEROL HEMISUCCINATE × 2 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.81 Å |
| 9W65 Cryo-EM structure of ATP bound state human ABCD3 in inward-facing conformation Deposited 2025-08-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–238（238 aa）
|
Mutation：E596Q | ATP ADENOSINE-5'-TRIPHOSPHATE × 4 MG MAGNESIUM ION × 4 CLR CHOLESTEROL × 4 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.94 Å |
| 9W66 Cryo-EM structure of ATP bound state human ABCD3 in outward-facing conformation Deposited 2025-08-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–238（238 aa）
|
Mutation：E596Q | ATP ADENOSINE-5'-TRIPHOSPHATE × 2 MG MAGNESIUM ION × 2 CLR CHOLESTEROL × 8 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.30 Å |
| 9YOP Cryo-EM structure of human beta-cardiac myosin in the interacting-heads motif and S2-FH docked state Deposited 2025-10-13 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 6 PDB declaration: hexameric |
Chain A
1–238（238 aa）
Chain B
1–238（238 aa）
|
Not recorded | ADP ADENOSINE-5'-DIPHOSPHATE × 2 PO4 PHOSPHATE ION × 2 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.50 Å |
| 9YP4 Cryo-EM structure of human beta-cardiac myosin bound to omecamtiv mecarbil in the interacting-heads motif and S2-FH docked state Deposited 2025-10-13 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 6 PDB declaration: hexameric |
Chain A
1–238（238 aa）
Chain B
1–238（238 aa）
|
Not recorded | 2OW methyl 4-(2-fluoro-3-{[(6-methylpyridin-3-yl)carbamoyl]amino}benzyl)piperazine-1-carboxylate × 2 ADP ADENOSINE-5'-DIPHOSPHATE × 2 PO4 PHOSPHATE ION × 2 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.50 Å |
| 9YP9 Cryo-EM structure of human beta-cardiac myosin bound to mavacamten in the interacting-heads motif and S2-FH docked state Deposited 2025-10-13 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 6 PDB declaration: hexameric |
Chain A
1–238（238 aa）
Chain B
1–238（238 aa）
|
Not recorded | PO4 PHOSPHATE ION × 2 XB2 Mavacamten × 2 ADP ADENOSINE-5'-DIPHOSPHATE × 2 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å |
| 9YR7 Cryo-EM structure of human beta-cardiac myosin bound to mavacamten in the interacting-heads motif and S2-FH undocked state Deposited 2025-10-16 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 6 PDB declaration: hexameric |
Chain A
1–238（238 aa）
Chain B
1–238（238 aa）
|
Not recorded | XB2 Mavacamten × 2 ADP ADENOSINE-5'-DIPHOSPHATE × 2 PO4 PHOSPHATE ION × 2 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å |
| 9YRG Cryo-EM structure of human beta-cardiac myosin in the interacting-heads motif and S2-FH undocked state Deposited 2025-10-16 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 6 PDB declaration: hexameric |
Chain A
1–238（238 aa）
Chain B
1–238（238 aa）
|
Not recorded | ADP ADENOSINE-5'-DIPHOSPHATE × 2 PO4 PHOSPHATE ION × 2 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.20 Å |
| 9YRH Cryo-EM structure of human beta-cardiac myosin bound to omecamtiv mecarbil in the interacting-heads motif and S2-FH undocked state Deposited 2025-10-16 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 6 PDB declaration: hexameric |
Chain A
1–238（238 aa）
Chain B
1–238（238 aa）
|
Not recorded | 2OW methyl 4-(2-fluoro-3-{[(6-methylpyridin-3-yl)carbamoyl]amino}benzyl)piperazine-1-carboxylate × 2 ADP ADENOSINE-5'-DIPHOSPHATE × 2 PO4 PHOSPHATE ION × 2 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.80 Å |
| 9YZQ Isoreticular co-crystal 1 with asymmetrical expanded duplex (31mer) containing insert sequence TGATGAGCAG and loaded with Engrailed homeodomain enhanced Green fluorescent protein fusion Deposited 2025-10-30 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Heteromer；Protein × 2 PDB declaration: tetrameric |
Chain D
1–238（238 aa）
|
Not recorded | MG MAGNESIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6.5；298 K；40mM Magnesium acetate, 1.4M Lithium sulfate, 50mM MES pH 6.5. The crystal was crosslinked with 45mg/mL EDC overnight, and then looped into a solution of 50mM potassium chloride, 4mM calcium chloride, 10% glycerol, and 10mM Tris hydrochloride for 1 hour. The drop was then supplemented with 22 micromolar engrailed homeodomain-enhanced Green fluorescent protein fusion
|
Resolution 3.75 Å R-free 0.338 |
568 other PDB entries and 744 assemblies. Open the comparison page and filter oligomeric states
View Construct and Data Evidence
| UniProt name | GFP_AEQVI |
| Isoform | — |
| PDB entities | 1 |
| Chains and sequence ranges | Author chain B； PDBConstruct 7–241； UniProt 2–238 |
