6yez

Plant PSI-ferredoxin-plastocyanin supercomplex

Method: ELECTRON MICROSCOPY
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

Photosystem I P700 chlorophyll a apoprotein A1

物种未注明

UniProt A0A0F6NFW5

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 18 Photosystem I P700 chlorophyll a apoprotein A2 × 1 (A0A0F6NGI2) Photosystem I iron-sulfur center × 1 (P10793) PsaD × 1 PsaE × 1 PsaF × 1 PsaG × 1 PsaH × 1 Photosystem I reaction center subunit VIII × 1 (P17227) PsaJ × 1 Photosystem I reaction center subunit X psaK × 1 (E1C9L3) PsaL × 1 Lhca1 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q41038) Chlorophyll a-b binding protein 3, chloroplastic × 1 (Q32904) Chlorophyll a-b binding protein P4, chloroplastic × 1 (Q9SQL2) Ferredoxin-1, chloroplastic × 1 (P09911) Plastocyanin, chloroplastic × 1 (P16002) CHLOROPHYLL A ISOMER × 1 CHLOROPHYLL A × 141 PHYLLOQUINONE × 2 BETA-CAROTENE × 27 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 8 DODECYL-BETA-D-MALTOSIDE × 6 IRON/SULFUR CLUSTER × 3 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 19 CALCIUM ION × 2 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 7 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 7 CHLOROPHYLL B × 15 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 2 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE × 1 ;(1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol ; × 1 FE2/S2 (INORGANIC) CLUSTER × 1 COPPER (II) ION × 1 water × 1 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 A0A0F6NFW5_PEA
Isoform —
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–743; UniProt 16–758

Photosystem I P700 chlorophyll a apoprotein A2

物种未注明

UniProt A0A0F6NGI2

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 18 Photosystem I P700 chlorophyll a apoprotein A1 × 1 (A0A0F6NFW5) Photosystem I iron-sulfur center × 1 (P10793) PsaD × 1 PsaE × 1 PsaF × 1 PsaG × 1 PsaH × 1 Photosystem I reaction center subunit VIII × 1 (P17227) PsaJ × 1 Photosystem I reaction center subunit X psaK × 1 (E1C9L3) PsaL × 1 Lhca1 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q41038) Chlorophyll a-b binding protein 3, chloroplastic × 1 (Q32904) Chlorophyll a-b binding protein P4, chloroplastic × 1 (Q9SQL2) Ferredoxin-1, chloroplastic × 1 (P09911) Plastocyanin, chloroplastic × 1 (P16002) CHLOROPHYLL A ISOMER × 1 CHLOROPHYLL A × 141 PHYLLOQUINONE × 2 BETA-CAROTENE × 27 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 8 DODECYL-BETA-D-MALTOSIDE × 6 IRON/SULFUR CLUSTER × 3 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 19 CALCIUM ION × 2 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 7 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 7 CHLOROPHYLL B × 15 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 2 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE × 1 ;(1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol ; × 1 FE2/S2 (INORGANIC) CLUSTER × 1 COPPER (II) ION × 1 water × 1 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 A0A0F6NGI2_PEA
Isoform —
PDB实体 2
链与序列区间 作者链 B; PDB构建体 1–733; UniProt 2–734

Photosystem I iron-sulfur center

物种未注明

UniProt P10793

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 18 Photosystem I P700 chlorophyll a apoprotein A1 × 1 (A0A0F6NFW5) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (A0A0F6NGI2) PsaD × 1 PsaE × 1 PsaF × 1 PsaG × 1 PsaH × 1 Photosystem I reaction center subunit VIII × 1 (P17227) PsaJ × 1 Photosystem I reaction center subunit X psaK × 1 (E1C9L3) PsaL × 1 Lhca1 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q41038) Chlorophyll a-b binding protein 3, chloroplastic × 1 (Q32904) Chlorophyll a-b binding protein P4, chloroplastic × 1 (Q9SQL2) Ferredoxin-1, chloroplastic × 1 (P09911) Plastocyanin, chloroplastic × 1 (P16002) CHLOROPHYLL A ISOMER × 1 CHLOROPHYLL A × 141 PHYLLOQUINONE × 2 BETA-CAROTENE × 27 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 8 DODECYL-BETA-D-MALTOSIDE × 6 IRON/SULFUR CLUSTER × 3 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 19 CALCIUM ION × 2 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 7 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 7 CHLOROPHYLL B × 15 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 2 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE × 1 ;(1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol ; × 1 FE2/S2 (INORGANIC) CLUSTER × 1 COPPER (II) ION × 1 water × 1 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 PSAC_PEA
Isoform —
PDB实体 3
链与序列区间 作者链 C; PDB构建体 1–80; UniProt 2–81

Photosystem I reaction center subunit VIII

物种未注明

UniProt P17227

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 18 Photosystem I P700 chlorophyll a apoprotein A1 × 1 (A0A0F6NFW5) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (A0A0F6NGI2) Photosystem I iron-sulfur center × 1 (P10793) PsaD × 1 PsaE × 1 PsaF × 1 PsaG × 1 PsaH × 1 PsaJ × 1 Photosystem I reaction center subunit X psaK × 1 (E1C9L3) PsaL × 1 Lhca1 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q41038) Chlorophyll a-b binding protein 3, chloroplastic × 1 (Q32904) Chlorophyll a-b binding protein P4, chloroplastic × 1 (Q9SQL2) Ferredoxin-1, chloroplastic × 1 (P09911) Plastocyanin, chloroplastic × 1 (P16002) CHLOROPHYLL A ISOMER × 1 CHLOROPHYLL A × 141 PHYLLOQUINONE × 2 BETA-CAROTENE × 27 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 8 DODECYL-BETA-D-MALTOSIDE × 6 IRON/SULFUR CLUSTER × 3 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 19 CALCIUM ION × 2 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 7 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 7 CHLOROPHYLL B × 15 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 2 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE × 1 ;(1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol ; × 1 FE2/S2 (INORGANIC) CLUSTER × 1 COPPER (II) ION × 1 water × 1 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 PSAI_PEA
Isoform —
PDB实体 9
链与序列区间 作者链 I; PDB构建体 1–31; UniProt 2–32

Photosystem I reaction center subunit X psaK

物种未注明

UniProt E1C9L3

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 18 Photosystem I P700 chlorophyll a apoprotein A1 × 1 (A0A0F6NFW5) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (A0A0F6NGI2) Photosystem I iron-sulfur center × 1 (P10793) PsaD × 1 PsaE × 1 PsaF × 1 PsaG × 1 PsaH × 1 Photosystem I reaction center subunit VIII × 1 (P17227) PsaJ × 1 PsaL × 1 Lhca1 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q41038) Chlorophyll a-b binding protein 3, chloroplastic × 1 (Q32904) Chlorophyll a-b binding protein P4, chloroplastic × 1 (Q9SQL2) Ferredoxin-1, chloroplastic × 1 (P09911) Plastocyanin, chloroplastic × 1 (P16002) CHLOROPHYLL A ISOMER × 1 CHLOROPHYLL A × 141 PHYLLOQUINONE × 2 BETA-CAROTENE × 27 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 8 DODECYL-BETA-D-MALTOSIDE × 6 IRON/SULFUR CLUSTER × 3 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 19 CALCIUM ION × 2 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 7 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 7 CHLOROPHYLL B × 15 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 2 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE × 1 ;(1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol ; × 1 FE2/S2 (INORGANIC) CLUSTER × 1 COPPER (II) ION × 1 water × 1 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 E1C9L3_PEA
Isoform —
PDB实体 11
链与序列区间 作者链 K; PDB构建体 1–81; UniProt 2–82

Chlorophyll a-b binding protein, chloroplastic

物种未注明

UniProt Q41038

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 18 Photosystem I P700 chlorophyll a apoprotein A1 × 1 (A0A0F6NFW5) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (A0A0F6NGI2) Photosystem I iron-sulfur center × 1 (P10793) PsaD × 1 PsaE × 1 PsaF × 1 PsaG × 1 PsaH × 1 Photosystem I reaction center subunit VIII × 1 (P17227) PsaJ × 1 Photosystem I reaction center subunit X psaK × 1 (E1C9L3) PsaL × 1 Lhca1 × 1 Chlorophyll a-b binding protein 3, chloroplastic × 1 (Q32904) Chlorophyll a-b binding protein P4, chloroplastic × 1 (Q9SQL2) Ferredoxin-1, chloroplastic × 1 (P09911) Plastocyanin, chloroplastic × 1 (P16002) CHLOROPHYLL A ISOMER × 1 CHLOROPHYLL A × 141 PHYLLOQUINONE × 2 BETA-CAROTENE × 27 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 8 DODECYL-BETA-D-MALTOSIDE × 6 IRON/SULFUR CLUSTER × 3 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 19 CALCIUM ION × 2 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 7 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 7 CHLOROPHYLL B × 15 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 2 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE × 1 ;(1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol ; × 1 FE2/S2 (INORGANIC) CLUSTER × 1 COPPER (II) ION × 1 water × 1 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 Q41038_PEA
Isoform —
PDB实体 14
链与序列区间 作者链 2; PDB构建体 1–208; UniProt 58–265

Chlorophyll a-b binding protein 3, chloroplastic

物种未注明

UniProt Q32904

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 18 Photosystem I P700 chlorophyll a apoprotein A1 × 1 (A0A0F6NFW5) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (A0A0F6NGI2) Photosystem I iron-sulfur center × 1 (P10793) PsaD × 1 PsaE × 1 PsaF × 1 PsaG × 1 PsaH × 1 Photosystem I reaction center subunit VIII × 1 (P17227) PsaJ × 1 Photosystem I reaction center subunit X psaK × 1 (E1C9L3) PsaL × 1 Lhca1 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q41038) Chlorophyll a-b binding protein P4, chloroplastic × 1 (Q9SQL2) Ferredoxin-1, chloroplastic × 1 (P09911) Plastocyanin, chloroplastic × 1 (P16002) CHLOROPHYLL A ISOMER × 1 CHLOROPHYLL A × 141 PHYLLOQUINONE × 2 BETA-CAROTENE × 27 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 8 DODECYL-BETA-D-MALTOSIDE × 6 IRON/SULFUR CLUSTER × 3 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 19 CALCIUM ION × 2 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 7 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 7 CHLOROPHYLL B × 15 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 2 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE × 1 ;(1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol ; × 1 FE2/S2 (INORGANIC) CLUSTER × 1 COPPER (II) ION × 1 water × 1 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 CB23_PEA
Isoform —
PDB实体 15
链与序列区间 作者链 3; PDB构建体 1–221; UniProt 55–275

Chlorophyll a-b binding protein P4, chloroplastic

物种未注明

UniProt Q9SQL2

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 18 Photosystem I P700 chlorophyll a apoprotein A1 × 1 (A0A0F6NFW5) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (A0A0F6NGI2) Photosystem I iron-sulfur center × 1 (P10793) PsaD × 1 PsaE × 1 PsaF × 1 PsaG × 1 PsaH × 1 Photosystem I reaction center subunit VIII × 1 (P17227) PsaJ × 1 Photosystem I reaction center subunit X psaK × 1 (E1C9L3) PsaL × 1 Lhca1 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q41038) Chlorophyll a-b binding protein 3, chloroplastic × 1 (Q32904) Ferredoxin-1, chloroplastic × 1 (P09911) Plastocyanin, chloroplastic × 1 (P16002) CHLOROPHYLL A ISOMER × 1 CHLOROPHYLL A × 141 PHYLLOQUINONE × 2 BETA-CAROTENE × 27 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 8 DODECYL-BETA-D-MALTOSIDE × 6 IRON/SULFUR CLUSTER × 3 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 19 CALCIUM ION × 2 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 7 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 7 CHLOROPHYLL B × 15 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 2 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE × 1 ;(1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol ; × 1 FE2/S2 (INORGANIC) CLUSTER × 1 COPPER (II) ION × 1 water × 1 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 CB24_PEA
Isoform —
PDB实体 16
链与序列区间 作者链 4; PDB构建体 1–198; UniProt 52–249

Ferredoxin-1, chloroplastic

物种未注明

UniProt P09911

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 18 Photosystem I P700 chlorophyll a apoprotein A1 × 1 (A0A0F6NFW5) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (A0A0F6NGI2) Photosystem I iron-sulfur center × 1 (P10793) PsaD × 1 PsaE × 1 PsaF × 1 PsaG × 1 PsaH × 1 Photosystem I reaction center subunit VIII × 1 (P17227) PsaJ × 1 Photosystem I reaction center subunit X psaK × 1 (E1C9L3) PsaL × 1 Lhca1 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q41038) Chlorophyll a-b binding protein 3, chloroplastic × 1 (Q32904) Chlorophyll a-b binding protein P4, chloroplastic × 1 (Q9SQL2) Plastocyanin, chloroplastic × 1 (P16002) CHLOROPHYLL A ISOMER × 1 CHLOROPHYLL A × 141 PHYLLOQUINONE × 2 BETA-CAROTENE × 27 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 8 DODECYL-BETA-D-MALTOSIDE × 6 IRON/SULFUR CLUSTER × 3 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 19 CALCIUM ION × 2 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 7 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 7 CHLOROPHYLL B × 15 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 2 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE × 1 ;(1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol ; × 1 FE2/S2 (INORGANIC) CLUSTER × 1 COPPER (II) ION × 1 water × 1 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 FER1_PEA
Isoform —
PDB实体 17
链与序列区间 作者链 N; PDB构建体 1–97; UniProt 53–149

Plastocyanin, chloroplastic

物种未注明

UniProt P16002

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 18 Photosystem I P700 chlorophyll a apoprotein A1 × 1 (A0A0F6NFW5) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (A0A0F6NGI2) Photosystem I iron-sulfur center × 1 (P10793) PsaD × 1 PsaE × 1 PsaF × 1 PsaG × 1 PsaH × 1 Photosystem I reaction center subunit VIII × 1 (P17227) PsaJ × 1 Photosystem I reaction center subunit X psaK × 1 (E1C9L3) PsaL × 1 Lhca1 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q41038) Chlorophyll a-b binding protein 3, chloroplastic × 1 (Q32904) Chlorophyll a-b binding protein P4, chloroplastic × 1 (Q9SQL2) Ferredoxin-1, chloroplastic × 1 (P09911) CHLOROPHYLL A ISOMER × 1 CHLOROPHYLL A × 141 PHYLLOQUINONE × 2 BETA-CAROTENE × 27 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 8 DODECYL-BETA-D-MALTOSIDE × 6 IRON/SULFUR CLUSTER × 3 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 19 CALCIUM ION × 2 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 7 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 7 CHLOROPHYLL B × 15 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 2 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE × 1 ;(1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol ; × 1 FE2/S2 (INORGANIC) CLUSTER × 1 COPPER (II) ION × 1 water × 1 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 PLAS_PEA
Isoform —
PDB实体 18
链与序列区间 作者链 P; PDB构建体 1–99; UniProt 70–168

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id6yez
沉积日期 deposition_date2020-03-25
结构标题 titlePlant PSI-ferredoxin-plastocyanin supercomplex
关键词 keywordsMembrane complex, photosystem I, ferredoxin, light harvesting, excitation transfer, PHOTOSYNTHESIS; PHOTOSYNTHESIS
实验方法 methodELECTRON MICROSCOPY
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

6yez__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

6yez__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

6yez__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)51.93 Å
Rg(电子密度)51.31 Å
总 Rg51.44 Å
原子数39215
残基数3438
排除体积736140 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 6yez__assembly_1__model_1 octadecameric (18) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (36)

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6. 折叠分类 (SCOP + CATH) 20 domains

SCOP 2.08 (15 domains)

结构域编号 domain_idd6yez1_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.43 — Chlorophyll a-b binding protein
超家族 Superfamily superfamilyf.43.1 — Chlorophyll a-b binding protein
家族 Family familyf.43.1.0 — automated matches
结构域编号 domain_idd6yez2_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.43 — Chlorophyll a-b binding protein
超家族 Superfamily superfamilyf.43.1 — Chlorophyll a-b binding protein
家族 Family familyf.43.1.0 — automated matches
结构域编号 domain_idd6yez3_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.43 — Chlorophyll a-b binding protein
超家族 Superfamily superfamilyf.43.1 — Chlorophyll a-b binding protein
家族 Family familyf.43.1.0 — automated matches
结构域编号 domain_idd6yez4_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.43 — Chlorophyll a-b binding protein
超家族 Superfamily superfamilyf.43.1 — Chlorophyll a-b binding protein
家族 Family familyf.43.1.0 — automated matches
结构域编号 domain_idd6yeza_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.29 — Photosystem I subunits PsaA/PsaB
超家族 Superfamily superfamilyf.29.1 — Photosystem I subunits PsaA/PsaB
家族 Family familyf.29.1.1 — Photosystem I subunits PsaA/PsaB
结构域编号 domain_idd6yezb_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.29 — Photosystem I subunits PsaA/PsaB
超家族 Superfamily superfamilyf.29.1 — Photosystem I subunits PsaA/PsaB
家族 Family familyf.29.1.1 — Photosystem I subunits PsaA/PsaB
结构域编号 domain_idd6yezc_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.58 — Ferredoxin-like
超家族 Superfamily superfamilyd.58.1 — 4Fe-4S ferredoxins
家族 Family familyd.58.1.2 — 7-Fe ferredoxin
结构域编号 domain_idd6yezd_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.187 — Photosystem I subunit PsaD
超家族 Superfamily superfamilyd.187.1 — Photosystem I subunit PsaD
家族 Family familyd.187.1.1 — Photosystem I subunit PsaD
结构域编号 domain_idd6yeze1
类 Class classb — All beta proteins
折叠类型 Fold foldb.34 — SH3-like barrel
超家族 Superfamily superfamilyb.34.4 — Electron transport accessory proteins
家族 Family familyb.34.4.0 — automated matches
结构域编号 domain_idd6yeze2
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags
结构域编号 domain_idd6yezf_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.23 — Single transmembrane helix
超家族 Superfamily superfamilyf.23.16 — Subunit III of photosystem I reaction centre, PsaF
家族 Family familyf.23.16.0 — automated matches
结构域编号 domain_idd6yezj_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.23 — Single transmembrane helix
超家族 Superfamily superfamilyf.23.18 — Subunit IX of photosystem I reaction centre, PsaJ
家族 Family familyf.23.18.0 — automated matches
结构域编号 domain_idd6yezl_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.31 — Photosystem I reaction center subunit XI, PsaL
超家族 Superfamily superfamilyf.31.1 — Photosystem I reaction center subunit XI, PsaL
家族 Family familyf.31.1.0 — automated matches
结构域编号 domain_idd6yezn_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.15 — beta-Grasp (ubiquitin-like)
超家族 Superfamily superfamilyd.15.4 — 2Fe-2S ferredoxin-like
家族 Family familyd.15.4.1 — 2Fe-2S ferredoxin-related
结构域编号 domain_idd6yezp_
类 Class classb — All beta proteins
折叠类型 Fold foldb.6 — Cupredoxin-like
超家族 Superfamily superfamilyb.6.1 — Cupredoxins
家族 Family familyb.6.1.1 — Plastocyanin/azurin-like

CATH v4.4 (5 domains)

结构域编号 domain_id6yez101
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3460 — Chlorophyll a-b binding protein
同源超家族 H-superfamily homologous superfamily10 — Chlorophyll a/b binding protein domain
结构域编号 domain_id6yez201
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3460 — Chlorophyll a-b binding protein
同源超家族 H-superfamily homologous superfamily10 — Chlorophyll a/b binding protein domain
结构域编号 domain_id6yez301
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3460 — Chlorophyll a-b binding protein
同源超家族 H-superfamily homologous superfamily10 — Chlorophyll a/b binding protein domain
结构域编号 domain_id6yez401
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3460 — Chlorophyll a-b binding protein
同源超家族 H-superfamily homologous superfamily10 — Chlorophyll a/b binding protein domain
结构域编号 domain_id6yezL01
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology1240 — Photosystem 1 Reaction Centre Subunit Xi; Chain: L;
同源超家族 H-superfamily homologous superfamily10 — Photosystem I PsaL, reaction centre subunit XI
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7. 引用文献 (1)