7dkz

Structure of plant photosystem I-light harvesting complex I supercomplex

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Chlorophyll a-b binding protein, chloroplastic

Pisum sativum

UniProt Q41038

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Lhca1 × 1 Chlorophyll a-b binding protein 3, chloroplastic × 1 (Q32904) Chlorophyll a-b binding protein P4, chloroplastic × 1 (Q9SQL2) Photosystem I P700 chlorophyll a apoprotein A1 × 1 (A0A0F6NFW5) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (A0A0F6NGI2) Photosystem I iron-sulfur center × 1 (P10793) PsaD × 1 PsaE × 1 (E1C9K6) PSI-F × 1 (A0A0M3KL12) PsaG × 1 PsaH × 1 Photosystem I reaction center subunit VIII × 1 (P17227) Photosystem I reaction center subunit IX × 1 (D5MAL3) PsaL × 1 PSI-K × 1 (E1C9L3) CHLOROPHYLL A × 140 CHLOROPHYLL B × 12 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 4 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 4 BETA-CAROTENE × 26 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 7 DODECYL-BETA-D-MALTOSIDE × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 5 heptyl 1-thio-beta-D-glucopyranoside × 8 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 water × 11 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q41038_PEA
Isoform —
PDB entities 2
Chains and sequence ranges Author chain 2; PDBConstruct 1–269; UniProt 1–269

Chlorophyll a-b binding protein 3, chloroplastic

Pisum sativum

UniProt Q32904

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Lhca1 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q41038) Chlorophyll a-b binding protein P4, chloroplastic × 1 (Q9SQL2) Photosystem I P700 chlorophyll a apoprotein A1 × 1 (A0A0F6NFW5) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (A0A0F6NGI2) Photosystem I iron-sulfur center × 1 (P10793) PsaD × 1 PsaE × 1 (E1C9K6) PSI-F × 1 (A0A0M3KL12) PsaG × 1 PsaH × 1 Photosystem I reaction center subunit VIII × 1 (P17227) Photosystem I reaction center subunit IX × 1 (D5MAL3) PsaL × 1 PSI-K × 1 (E1C9L3) CHLOROPHYLL A × 140 CHLOROPHYLL B × 12 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 4 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 4 BETA-CAROTENE × 26 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 7 DODECYL-BETA-D-MALTOSIDE × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 5 heptyl 1-thio-beta-D-glucopyranoside × 8 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 water × 11 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CB23_PEA
Isoform —
PDB entities 3
Chains and sequence ranges Author chain 3; PDBConstruct 1–275; UniProt 1–275

Chlorophyll a-b binding protein P4, chloroplastic

Pisum sativum

UniProt Q9SQL2

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Lhca1 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q41038) Chlorophyll a-b binding protein 3, chloroplastic × 1 (Q32904) Photosystem I P700 chlorophyll a apoprotein A1 × 1 (A0A0F6NFW5) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (A0A0F6NGI2) Photosystem I iron-sulfur center × 1 (P10793) PsaD × 1 PsaE × 1 (E1C9K6) PSI-F × 1 (A0A0M3KL12) PsaG × 1 PsaH × 1 Photosystem I reaction center subunit VIII × 1 (P17227) Photosystem I reaction center subunit IX × 1 (D5MAL3) PsaL × 1 PSI-K × 1 (E1C9L3) CHLOROPHYLL A × 140 CHLOROPHYLL B × 12 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 4 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 4 BETA-CAROTENE × 26 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 7 DODECYL-BETA-D-MALTOSIDE × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 5 heptyl 1-thio-beta-D-glucopyranoside × 8 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 water × 11 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CB24_PEA
Isoform —
PDB entities 4
Chains and sequence ranges Author chain 4; PDBConstruct 1–198; UniProt 52–249

Photosystem I P700 chlorophyll a apoprotein A1

Pisum sativum

UniProt A0A0F6NFW5

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Lhca1 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q41038) Chlorophyll a-b binding protein 3, chloroplastic × 1 (Q32904) Chlorophyll a-b binding protein P4, chloroplastic × 1 (Q9SQL2) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (A0A0F6NGI2) Photosystem I iron-sulfur center × 1 (P10793) PsaD × 1 PsaE × 1 (E1C9K6) PSI-F × 1 (A0A0M3KL12) PsaG × 1 PsaH × 1 Photosystem I reaction center subunit VIII × 1 (P17227) Photosystem I reaction center subunit IX × 1 (D5MAL3) PsaL × 1 PSI-K × 1 (E1C9L3) CHLOROPHYLL A × 140 CHLOROPHYLL B × 12 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 4 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 4 BETA-CAROTENE × 26 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 7 DODECYL-BETA-D-MALTOSIDE × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 5 heptyl 1-thio-beta-D-glucopyranoside × 8 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 water × 11 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A0F6NFW5_PEA
Isoform —
PDB entities 5
Chains and sequence ranges Author chain A; PDBConstruct 1–758; UniProt 1–758

Photosystem I P700 chlorophyll a apoprotein A2

Pisum sativum

UniProt A0A0F6NGI2

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Lhca1 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q41038) Chlorophyll a-b binding protein 3, chloroplastic × 1 (Q32904) Chlorophyll a-b binding protein P4, chloroplastic × 1 (Q9SQL2) Photosystem I P700 chlorophyll a apoprotein A1 × 1 (A0A0F6NFW5) Photosystem I iron-sulfur center × 1 (P10793) PsaD × 1 PsaE × 1 (E1C9K6) PSI-F × 1 (A0A0M3KL12) PsaG × 1 PsaH × 1 Photosystem I reaction center subunit VIII × 1 (P17227) Photosystem I reaction center subunit IX × 1 (D5MAL3) PsaL × 1 PSI-K × 1 (E1C9L3) CHLOROPHYLL A × 140 CHLOROPHYLL B × 12 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 4 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 4 BETA-CAROTENE × 26 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 7 DODECYL-BETA-D-MALTOSIDE × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 5 heptyl 1-thio-beta-D-glucopyranoside × 8 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 water × 11 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A0F6NGI2_PEA
Isoform —
PDB entities 6
Chains and sequence ranges Author chain B; PDBConstruct 1–734; UniProt 1–734

Photosystem I iron-sulfur center

Pisum sativum

UniProt P10793

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Lhca1 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q41038) Chlorophyll a-b binding protein 3, chloroplastic × 1 (Q32904) Chlorophyll a-b binding protein P4, chloroplastic × 1 (Q9SQL2) Photosystem I P700 chlorophyll a apoprotein A1 × 1 (A0A0F6NFW5) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (A0A0F6NGI2) PsaD × 1 PsaE × 1 (E1C9K6) PSI-F × 1 (A0A0M3KL12) PsaG × 1 PsaH × 1 Photosystem I reaction center subunit VIII × 1 (P17227) Photosystem I reaction center subunit IX × 1 (D5MAL3) PsaL × 1 PSI-K × 1 (E1C9L3) CHLOROPHYLL A × 140 CHLOROPHYLL B × 12 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 4 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 4 BETA-CAROTENE × 26 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 7 DODECYL-BETA-D-MALTOSIDE × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 5 heptyl 1-thio-beta-D-glucopyranoside × 8 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 water × 11 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAC_PEA
Isoform —
PDB entities 7
Chains and sequence ranges Author chain C; PDBConstruct 1–81; UniProt 1–81

PsaE

Pisum sativum

UniProt E1C9K6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Lhca1 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q41038) Chlorophyll a-b binding protein 3, chloroplastic × 1 (Q32904) Chlorophyll a-b binding protein P4, chloroplastic × 1 (Q9SQL2) Photosystem I P700 chlorophyll a apoprotein A1 × 1 (A0A0F6NFW5) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (A0A0F6NGI2) Photosystem I iron-sulfur center × 1 (P10793) PsaD × 1 PSI-F × 1 (A0A0M3KL12) PsaG × 1 PsaH × 1 Photosystem I reaction center subunit VIII × 1 (P17227) Photosystem I reaction center subunit IX × 1 (D5MAL3) PsaL × 1 PSI-K × 1 (E1C9L3) CHLOROPHYLL A × 140 CHLOROPHYLL B × 12 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 4 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 4 BETA-CAROTENE × 26 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 7 DODECYL-BETA-D-MALTOSIDE × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 5 heptyl 1-thio-beta-D-glucopyranoside × 8 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 water × 11 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name E1C9K6_PEA
Isoform —
PDB entities 9
Chains and sequence ranges Author chain E; PDBConstruct 3–61; UniProt 1–59

PSI-F

Pisum sativum

UniProt A0A0M3KL12

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Lhca1 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q41038) Chlorophyll a-b binding protein 3, chloroplastic × 1 (Q32904) Chlorophyll a-b binding protein P4, chloroplastic × 1 (Q9SQL2) Photosystem I P700 chlorophyll a apoprotein A1 × 1 (A0A0F6NFW5) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (A0A0F6NGI2) Photosystem I iron-sulfur center × 1 (P10793) PsaD × 1 PsaE × 1 (E1C9K6) PsaG × 1 PsaH × 1 Photosystem I reaction center subunit VIII × 1 (P17227) Photosystem I reaction center subunit IX × 1 (D5MAL3) PsaL × 1 PSI-K × 1 (E1C9L3) CHLOROPHYLL A × 140 CHLOROPHYLL B × 12 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 4 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 4 BETA-CAROTENE × 26 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 7 DODECYL-BETA-D-MALTOSIDE × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 5 heptyl 1-thio-beta-D-glucopyranoside × 8 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 water × 11 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A0M3KL12_PEA
Isoform —
PDB entities 10
Chains and sequence ranges Author chain F; PDBConstruct 1–154; UniProt 1–154

Photosystem I reaction center subunit VIII

Pisum sativum

UniProt P17227

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Lhca1 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q41038) Chlorophyll a-b binding protein 3, chloroplastic × 1 (Q32904) Chlorophyll a-b binding protein P4, chloroplastic × 1 (Q9SQL2) Photosystem I P700 chlorophyll a apoprotein A1 × 1 (A0A0F6NFW5) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (A0A0F6NGI2) Photosystem I iron-sulfur center × 1 (P10793) PsaD × 1 PsaE × 1 (E1C9K6) PSI-F × 1 (A0A0M3KL12) PsaG × 1 PsaH × 1 Photosystem I reaction center subunit IX × 1 (D5MAL3) PsaL × 1 PSI-K × 1 (E1C9L3) CHLOROPHYLL A × 140 CHLOROPHYLL B × 12 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 4 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 4 BETA-CAROTENE × 26 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 7 DODECYL-BETA-D-MALTOSIDE × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 5 heptyl 1-thio-beta-D-glucopyranoside × 8 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 water × 11 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAI_PEA
Isoform —
PDB entities 13
Chains and sequence ranges Author chain I; PDBConstruct 1–40; UniProt 1–40

Photosystem I reaction center subunit IX

Pisum sativum

UniProt D5MAL3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Lhca1 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q41038) Chlorophyll a-b binding protein 3, chloroplastic × 1 (Q32904) Chlorophyll a-b binding protein P4, chloroplastic × 1 (Q9SQL2) Photosystem I P700 chlorophyll a apoprotein A1 × 1 (A0A0F6NFW5) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (A0A0F6NGI2) Photosystem I iron-sulfur center × 1 (P10793) PsaD × 1 PsaE × 1 (E1C9K6) PSI-F × 1 (A0A0M3KL12) PsaG × 1 PsaH × 1 Photosystem I reaction center subunit VIII × 1 (P17227) PsaL × 1 PSI-K × 1 (E1C9L3) CHLOROPHYLL A × 140 CHLOROPHYLL B × 12 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 4 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 4 BETA-CAROTENE × 26 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 7 DODECYL-BETA-D-MALTOSIDE × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 5 heptyl 1-thio-beta-D-glucopyranoside × 8 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 water × 11 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name D5MAL3_PEA
Isoform —
PDB entities 14
Chains and sequence ranges Author chain J; PDBConstruct 1–42; UniProt 1–42

PSI-K

Pisum sativum

UniProt E1C9L3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Lhca1 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q41038) Chlorophyll a-b binding protein 3, chloroplastic × 1 (Q32904) Chlorophyll a-b binding protein P4, chloroplastic × 1 (Q9SQL2) Photosystem I P700 chlorophyll a apoprotein A1 × 1 (A0A0F6NFW5) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (A0A0F6NGI2) Photosystem I iron-sulfur center × 1 (P10793) PsaD × 1 PsaE × 1 (E1C9K6) PSI-F × 1 (A0A0M3KL12) PsaG × 1 PsaH × 1 Photosystem I reaction center subunit VIII × 1 (P17227) Photosystem I reaction center subunit IX × 1 (D5MAL3) PsaL × 1 CHLOROPHYLL A × 140 CHLOROPHYLL B × 12 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 4 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 4 BETA-CAROTENE × 26 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 7 DODECYL-BETA-D-MALTOSIDE × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 5 heptyl 1-thio-beta-D-glucopyranoside × 8 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 water × 11 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name E1C9L3_PEA
Isoform —
PDB entities 16
Chains and sequence ranges Author chain K; PDBConstruct 1–80; UniProt 3–82

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id7dkz
Deposition date deposition_date2020-11-25
Structure title titleStructure of plant photosystem I-light harvesting complex I supercomplex
Keywords keywordsPSI-LHCI high plants, PHOTOSYNTHESIS; PHOTOSYNTHESIS
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

7dkz__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

7dkz__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

7dkz__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)51.40 Å
Rg (electron density)50.68 Å
Total Rg50.82 Å
Atom count36000
Residues3200
Excluded volume674050 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 7dkz__assembly_1__model_1 hexadecameric (16) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (29)

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6. Fold Classification (SCOP + CATH) 16 domains

SCOP 2.08 (13 domains)

Domain ID domain_idd7dkz1_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.43 — Chlorophyll a-b binding protein
Superfamily Superfamily superfamilyf.43.1 — Chlorophyll a-b binding protein
Family Family familyf.43.1.0 — automated matches
Domain ID domain_idd7dkz2_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.43 — Chlorophyll a-b binding protein
Superfamily Superfamily superfamilyf.43.1 — Chlorophyll a-b binding protein
Family Family familyf.43.1.0 — automated matches
Domain ID domain_idd7dkz3_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.43 — Chlorophyll a-b binding protein
Superfamily Superfamily superfamilyf.43.1 — Chlorophyll a-b binding protein
Family Family familyf.43.1.0 — automated matches
Domain ID domain_idd7dkz4_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.43 — Chlorophyll a-b binding protein
Superfamily Superfamily superfamilyf.43.1 — Chlorophyll a-b binding protein
Family Family familyf.43.1.0 — automated matches
Domain ID domain_idd7dkza_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.29 — Photosystem I subunits PsaA/PsaB
Superfamily Superfamily superfamilyf.29.1 — Photosystem I subunits PsaA/PsaB
Family Family familyf.29.1.1 — Photosystem I subunits PsaA/PsaB
Domain ID domain_idd7dkzb_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.29 — Photosystem I subunits PsaA/PsaB
Superfamily Superfamily superfamilyf.29.1 — Photosystem I subunits PsaA/PsaB
Family Family familyf.29.1.1 — Photosystem I subunits PsaA/PsaB
Domain ID domain_idd7dkzc_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.58 — Ferredoxin-like
Superfamily Superfamily superfamilyd.58.1 — 4Fe-4S ferredoxins
Family Family familyd.58.1.2 — 7-Fe ferredoxin
Domain ID domain_idd7dkzd_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.187 — Photosystem I subunit PsaD
Superfamily Superfamily superfamilyd.187.1 — Photosystem I subunit PsaD
Family Family familyd.187.1.1 — Photosystem I subunit PsaD
Domain ID domain_idd7dkze1
Class classb — All beta proteins
Fold Fold foldb.34 — SH3-like barrel
Superfamily Superfamily superfamilyb.34.4 — Electron transport accessory proteins
Family Family familyb.34.4.0 — automated matches
Domain ID domain_idd7dkze2
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd7dkzf_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.23 — Single transmembrane helix
Superfamily Superfamily superfamilyf.23.16 — Subunit III of photosystem I reaction centre, PsaF
Family Family familyf.23.16.0 — automated matches
Domain ID domain_idd7dkzj_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.23 — Single transmembrane helix
Superfamily Superfamily superfamilyf.23.18 — Subunit IX of photosystem I reaction centre, PsaJ
Family Family familyf.23.18.0 — automated matches
Domain ID domain_idd7dkzl_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.31 — Photosystem I reaction center subunit XI, PsaL
Superfamily Superfamily superfamilyf.31.1 — Photosystem I reaction center subunit XI, PsaL
Family Family familyf.31.1.0 — automated matches

CATH v4.4 (3 domains)

Domain ID domain_id7dkz101
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3460 — Chlorophyll a-b binding protein
Homologous superfamily homologous superfamily10 — Chlorophyll a/b binding protein domain
Domain ID domain_id7dkz401
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3460 — Chlorophyll a-b binding protein
Homologous superfamily homologous superfamily10 — Chlorophyll a/b binding protein domain
Domain ID domain_id7dkzL01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1240 — Photosystem 1 Reaction Centre Subunit Xi; Chain: L;
Homologous superfamily homologous superfamily10 — Photosystem I PsaL, reaction centre subunit XI
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7. Citations (1)