7dkz

Structure of plant photosystem I-light harvesting complex I supercomplex

Method: X-RAY DIFFRACTION
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

Chlorophyll a-b binding protein, chloroplastic

Pisum sativum

UniProt Q41038

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 16 Lhca1 × 1 Chlorophyll a-b binding protein 3, chloroplastic × 1 (Q32904) Chlorophyll a-b binding protein P4, chloroplastic × 1 (Q9SQL2) Photosystem I P700 chlorophyll a apoprotein A1 × 1 (A0A0F6NFW5) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (A0A0F6NGI2) Photosystem I iron-sulfur center × 1 (P10793) PsaD × 1 PsaE × 1 (E1C9K6) PSI-F × 1 (A0A0M3KL12) PsaG × 1 PsaH × 1 Photosystem I reaction center subunit VIII × 1 (P17227) Photosystem I reaction center subunit IX × 1 (D5MAL3) PsaL × 1 PSI-K × 1 (E1C9L3) CHLOROPHYLL A × 140 CHLOROPHYLL B × 12 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 4 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 4 BETA-CAROTENE × 26 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 7 DODECYL-BETA-D-MALTOSIDE × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 5 heptyl 1-thio-beta-D-glucopyranoside × 8 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 water × 11 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 Q41038_PEA
Isoform —
PDB实体 2
链与序列区间 作者链 2; PDB构建体 1–269; UniProt 1–269

Chlorophyll a-b binding protein 3, chloroplastic

Pisum sativum

UniProt Q32904

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 16 Lhca1 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q41038) Chlorophyll a-b binding protein P4, chloroplastic × 1 (Q9SQL2) Photosystem I P700 chlorophyll a apoprotein A1 × 1 (A0A0F6NFW5) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (A0A0F6NGI2) Photosystem I iron-sulfur center × 1 (P10793) PsaD × 1 PsaE × 1 (E1C9K6) PSI-F × 1 (A0A0M3KL12) PsaG × 1 PsaH × 1 Photosystem I reaction center subunit VIII × 1 (P17227) Photosystem I reaction center subunit IX × 1 (D5MAL3) PsaL × 1 PSI-K × 1 (E1C9L3) CHLOROPHYLL A × 140 CHLOROPHYLL B × 12 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 4 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 4 BETA-CAROTENE × 26 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 7 DODECYL-BETA-D-MALTOSIDE × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 5 heptyl 1-thio-beta-D-glucopyranoside × 8 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 water × 11 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 CB23_PEA
Isoform —
PDB实体 3
链与序列区间 作者链 3; PDB构建体 1–275; UniProt 1–275

Chlorophyll a-b binding protein P4, chloroplastic

Pisum sativum

UniProt Q9SQL2

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 16 Lhca1 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q41038) Chlorophyll a-b binding protein 3, chloroplastic × 1 (Q32904) Photosystem I P700 chlorophyll a apoprotein A1 × 1 (A0A0F6NFW5) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (A0A0F6NGI2) Photosystem I iron-sulfur center × 1 (P10793) PsaD × 1 PsaE × 1 (E1C9K6) PSI-F × 1 (A0A0M3KL12) PsaG × 1 PsaH × 1 Photosystem I reaction center subunit VIII × 1 (P17227) Photosystem I reaction center subunit IX × 1 (D5MAL3) PsaL × 1 PSI-K × 1 (E1C9L3) CHLOROPHYLL A × 140 CHLOROPHYLL B × 12 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 4 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 4 BETA-CAROTENE × 26 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 7 DODECYL-BETA-D-MALTOSIDE × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 5 heptyl 1-thio-beta-D-glucopyranoside × 8 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 water × 11 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 CB24_PEA
Isoform —
PDB实体 4
链与序列区间 作者链 4; PDB构建体 1–198; UniProt 52–249

Photosystem I P700 chlorophyll a apoprotein A1

Pisum sativum

UniProt A0A0F6NFW5

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 16 Lhca1 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q41038) Chlorophyll a-b binding protein 3, chloroplastic × 1 (Q32904) Chlorophyll a-b binding protein P4, chloroplastic × 1 (Q9SQL2) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (A0A0F6NGI2) Photosystem I iron-sulfur center × 1 (P10793) PsaD × 1 PsaE × 1 (E1C9K6) PSI-F × 1 (A0A0M3KL12) PsaG × 1 PsaH × 1 Photosystem I reaction center subunit VIII × 1 (P17227) Photosystem I reaction center subunit IX × 1 (D5MAL3) PsaL × 1 PSI-K × 1 (E1C9L3) CHLOROPHYLL A × 140 CHLOROPHYLL B × 12 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 4 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 4 BETA-CAROTENE × 26 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 7 DODECYL-BETA-D-MALTOSIDE × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 5 heptyl 1-thio-beta-D-glucopyranoside × 8 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 water × 11 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 A0A0F6NFW5_PEA
Isoform —
PDB实体 5
链与序列区间 作者链 A; PDB构建体 1–758; UniProt 1–758

Photosystem I P700 chlorophyll a apoprotein A2

Pisum sativum

UniProt A0A0F6NGI2

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 16 Lhca1 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q41038) Chlorophyll a-b binding protein 3, chloroplastic × 1 (Q32904) Chlorophyll a-b binding protein P4, chloroplastic × 1 (Q9SQL2) Photosystem I P700 chlorophyll a apoprotein A1 × 1 (A0A0F6NFW5) Photosystem I iron-sulfur center × 1 (P10793) PsaD × 1 PsaE × 1 (E1C9K6) PSI-F × 1 (A0A0M3KL12) PsaG × 1 PsaH × 1 Photosystem I reaction center subunit VIII × 1 (P17227) Photosystem I reaction center subunit IX × 1 (D5MAL3) PsaL × 1 PSI-K × 1 (E1C9L3) CHLOROPHYLL A × 140 CHLOROPHYLL B × 12 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 4 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 4 BETA-CAROTENE × 26 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 7 DODECYL-BETA-D-MALTOSIDE × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 5 heptyl 1-thio-beta-D-glucopyranoside × 8 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 water × 11 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 A0A0F6NGI2_PEA
Isoform —
PDB实体 6
链与序列区间 作者链 B; PDB构建体 1–734; UniProt 1–734

Photosystem I iron-sulfur center

Pisum sativum

UniProt P10793

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 16 Lhca1 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q41038) Chlorophyll a-b binding protein 3, chloroplastic × 1 (Q32904) Chlorophyll a-b binding protein P4, chloroplastic × 1 (Q9SQL2) Photosystem I P700 chlorophyll a apoprotein A1 × 1 (A0A0F6NFW5) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (A0A0F6NGI2) PsaD × 1 PsaE × 1 (E1C9K6) PSI-F × 1 (A0A0M3KL12) PsaG × 1 PsaH × 1 Photosystem I reaction center subunit VIII × 1 (P17227) Photosystem I reaction center subunit IX × 1 (D5MAL3) PsaL × 1 PSI-K × 1 (E1C9L3) CHLOROPHYLL A × 140 CHLOROPHYLL B × 12 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 4 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 4 BETA-CAROTENE × 26 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 7 DODECYL-BETA-D-MALTOSIDE × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 5 heptyl 1-thio-beta-D-glucopyranoside × 8 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 water × 11 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 PSAC_PEA
Isoform —
PDB实体 7
链与序列区间 作者链 C; PDB构建体 1–81; UniProt 1–81

PsaE

Pisum sativum

UniProt E1C9K6

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 16 Lhca1 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q41038) Chlorophyll a-b binding protein 3, chloroplastic × 1 (Q32904) Chlorophyll a-b binding protein P4, chloroplastic × 1 (Q9SQL2) Photosystem I P700 chlorophyll a apoprotein A1 × 1 (A0A0F6NFW5) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (A0A0F6NGI2) Photosystem I iron-sulfur center × 1 (P10793) PsaD × 1 PSI-F × 1 (A0A0M3KL12) PsaG × 1 PsaH × 1 Photosystem I reaction center subunit VIII × 1 (P17227) Photosystem I reaction center subunit IX × 1 (D5MAL3) PsaL × 1 PSI-K × 1 (E1C9L3) CHLOROPHYLL A × 140 CHLOROPHYLL B × 12 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 4 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 4 BETA-CAROTENE × 26 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 7 DODECYL-BETA-D-MALTOSIDE × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 5 heptyl 1-thio-beta-D-glucopyranoside × 8 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 water × 11 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 E1C9K6_PEA
Isoform —
PDB实体 9
链与序列区间 作者链 E; PDB构建体 3–61; UniProt 1–59

PSI-F

Pisum sativum

UniProt A0A0M3KL12

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 16 Lhca1 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q41038) Chlorophyll a-b binding protein 3, chloroplastic × 1 (Q32904) Chlorophyll a-b binding protein P4, chloroplastic × 1 (Q9SQL2) Photosystem I P700 chlorophyll a apoprotein A1 × 1 (A0A0F6NFW5) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (A0A0F6NGI2) Photosystem I iron-sulfur center × 1 (P10793) PsaD × 1 PsaE × 1 (E1C9K6) PsaG × 1 PsaH × 1 Photosystem I reaction center subunit VIII × 1 (P17227) Photosystem I reaction center subunit IX × 1 (D5MAL3) PsaL × 1 PSI-K × 1 (E1C9L3) CHLOROPHYLL A × 140 CHLOROPHYLL B × 12 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 4 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 4 BETA-CAROTENE × 26 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 7 DODECYL-BETA-D-MALTOSIDE × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 5 heptyl 1-thio-beta-D-glucopyranoside × 8 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 water × 11 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 A0A0M3KL12_PEA
Isoform —
PDB实体 10
链与序列区间 作者链 F; PDB构建体 1–154; UniProt 1–154

Photosystem I reaction center subunit VIII

Pisum sativum

UniProt P17227

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 16 Lhca1 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q41038) Chlorophyll a-b binding protein 3, chloroplastic × 1 (Q32904) Chlorophyll a-b binding protein P4, chloroplastic × 1 (Q9SQL2) Photosystem I P700 chlorophyll a apoprotein A1 × 1 (A0A0F6NFW5) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (A0A0F6NGI2) Photosystem I iron-sulfur center × 1 (P10793) PsaD × 1 PsaE × 1 (E1C9K6) PSI-F × 1 (A0A0M3KL12) PsaG × 1 PsaH × 1 Photosystem I reaction center subunit IX × 1 (D5MAL3) PsaL × 1 PSI-K × 1 (E1C9L3) CHLOROPHYLL A × 140 CHLOROPHYLL B × 12 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 4 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 4 BETA-CAROTENE × 26 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 7 DODECYL-BETA-D-MALTOSIDE × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 5 heptyl 1-thio-beta-D-glucopyranoside × 8 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 water × 11 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 PSAI_PEA
Isoform —
PDB实体 13
链与序列区间 作者链 I; PDB构建体 1–40; UniProt 1–40

Photosystem I reaction center subunit IX

Pisum sativum

UniProt D5MAL3

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 16 Lhca1 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q41038) Chlorophyll a-b binding protein 3, chloroplastic × 1 (Q32904) Chlorophyll a-b binding protein P4, chloroplastic × 1 (Q9SQL2) Photosystem I P700 chlorophyll a apoprotein A1 × 1 (A0A0F6NFW5) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (A0A0F6NGI2) Photosystem I iron-sulfur center × 1 (P10793) PsaD × 1 PsaE × 1 (E1C9K6) PSI-F × 1 (A0A0M3KL12) PsaG × 1 PsaH × 1 Photosystem I reaction center subunit VIII × 1 (P17227) PsaL × 1 PSI-K × 1 (E1C9L3) CHLOROPHYLL A × 140 CHLOROPHYLL B × 12 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 4 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 4 BETA-CAROTENE × 26 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 7 DODECYL-BETA-D-MALTOSIDE × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 5 heptyl 1-thio-beta-D-glucopyranoside × 8 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 water × 11 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 D5MAL3_PEA
Isoform —
PDB实体 14
链与序列区间 作者链 J; PDB构建体 1–42; UniProt 1–42

PSI-K

Pisum sativum

UniProt E1C9L3

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 16 Lhca1 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q41038) Chlorophyll a-b binding protein 3, chloroplastic × 1 (Q32904) Chlorophyll a-b binding protein P4, chloroplastic × 1 (Q9SQL2) Photosystem I P700 chlorophyll a apoprotein A1 × 1 (A0A0F6NFW5) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (A0A0F6NGI2) Photosystem I iron-sulfur center × 1 (P10793) PsaD × 1 PsaE × 1 (E1C9K6) PSI-F × 1 (A0A0M3KL12) PsaG × 1 PsaH × 1 Photosystem I reaction center subunit VIII × 1 (P17227) Photosystem I reaction center subunit IX × 1 (D5MAL3) PsaL × 1 CHLOROPHYLL A × 140 CHLOROPHYLL B × 12 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 4 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 4 BETA-CAROTENE × 26 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 7 DODECYL-BETA-D-MALTOSIDE × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 5 heptyl 1-thio-beta-D-glucopyranoside × 8 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 water × 11 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 E1C9L3_PEA
Isoform —
PDB实体 16
链与序列区间 作者链 K; PDB构建体 1–80; UniProt 3–82

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id7dkz
沉积日期 deposition_date2020-11-25
结构标题 titleStructure of plant photosystem I-light harvesting complex I supercomplex
关键词 keywordsPSI-LHCI high plants, PHOTOSYNTHESIS; PHOTOSYNTHESIS
实验方法 methodX-RAY DIFFRACTION
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

7dkz__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

7dkz__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

7dkz__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)51.40 Å
Rg(电子密度)50.68 Å
总 Rg50.82 Å
原子数36000
残基数3200
排除体积674050 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 7dkz__assembly_1__model_1 hexadecameric (16) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (29)

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6. 折叠分类 (SCOP + CATH) 16 domains

SCOP 2.08 (13 domains)

结构域编号 domain_idd7dkz1_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.43 — Chlorophyll a-b binding protein
超家族 Superfamily superfamilyf.43.1 — Chlorophyll a-b binding protein
家族 Family familyf.43.1.0 — automated matches
结构域编号 domain_idd7dkz2_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.43 — Chlorophyll a-b binding protein
超家族 Superfamily superfamilyf.43.1 — Chlorophyll a-b binding protein
家族 Family familyf.43.1.0 — automated matches
结构域编号 domain_idd7dkz3_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.43 — Chlorophyll a-b binding protein
超家族 Superfamily superfamilyf.43.1 — Chlorophyll a-b binding protein
家族 Family familyf.43.1.0 — automated matches
结构域编号 domain_idd7dkz4_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.43 — Chlorophyll a-b binding protein
超家族 Superfamily superfamilyf.43.1 — Chlorophyll a-b binding protein
家族 Family familyf.43.1.0 — automated matches
结构域编号 domain_idd7dkza_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.29 — Photosystem I subunits PsaA/PsaB
超家族 Superfamily superfamilyf.29.1 — Photosystem I subunits PsaA/PsaB
家族 Family familyf.29.1.1 — Photosystem I subunits PsaA/PsaB
结构域编号 domain_idd7dkzb_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.29 — Photosystem I subunits PsaA/PsaB
超家族 Superfamily superfamilyf.29.1 — Photosystem I subunits PsaA/PsaB
家族 Family familyf.29.1.1 — Photosystem I subunits PsaA/PsaB
结构域编号 domain_idd7dkzc_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.58 — Ferredoxin-like
超家族 Superfamily superfamilyd.58.1 — 4Fe-4S ferredoxins
家族 Family familyd.58.1.2 — 7-Fe ferredoxin
结构域编号 domain_idd7dkzd_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.187 — Photosystem I subunit PsaD
超家族 Superfamily superfamilyd.187.1 — Photosystem I subunit PsaD
家族 Family familyd.187.1.1 — Photosystem I subunit PsaD
结构域编号 domain_idd7dkze1
类 Class classb — All beta proteins
折叠类型 Fold foldb.34 — SH3-like barrel
超家族 Superfamily superfamilyb.34.4 — Electron transport accessory proteins
家族 Family familyb.34.4.0 — automated matches
结构域编号 domain_idd7dkze2
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags
结构域编号 domain_idd7dkzf_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.23 — Single transmembrane helix
超家族 Superfamily superfamilyf.23.16 — Subunit III of photosystem I reaction centre, PsaF
家族 Family familyf.23.16.0 — automated matches
结构域编号 domain_idd7dkzj_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.23 — Single transmembrane helix
超家族 Superfamily superfamilyf.23.18 — Subunit IX of photosystem I reaction centre, PsaJ
家族 Family familyf.23.18.0 — automated matches
结构域编号 domain_idd7dkzl_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.31 — Photosystem I reaction center subunit XI, PsaL
超家族 Superfamily superfamilyf.31.1 — Photosystem I reaction center subunit XI, PsaL
家族 Family familyf.31.1.0 — automated matches

CATH v4.4 (3 domains)

结构域编号 domain_id7dkz101
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3460 — Chlorophyll a-b binding protein
同源超家族 H-superfamily homologous superfamily10 — Chlorophyll a/b binding protein domain
结构域编号 domain_id7dkz401
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3460 — Chlorophyll a-b binding protein
同源超家族 H-superfamily homologous superfamily10 — Chlorophyll a/b binding protein domain
结构域编号 domain_id7dkzL01
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology1240 — Photosystem 1 Reaction Centre Subunit Xi; Chain: L;
同源超家族 H-superfamily homologous superfamily10 — Photosystem I PsaL, reaction centre subunit XI
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7. 引用文献 (1)