7pmk

S. cerevisiae replisome-SCF(Dia2) complex bound to double-stranded DNA (conformation I)

Method: ELECTRON MICROSCOPY
▼

1. Protein Identity and Related Structures Protein Identity & Related Structures

DNA replication licensing factor MCM2

Saccharomyces cerevisiae

UniProt A0A6A5Q1S9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 DNA replication licensing factor MCM3 × 1 (P24279) DNA replication licensing factor MCM4 × 1 (P30665) DNA helicase × 1 (A0A6A5PUY8) DNA replication licensing factor MCM6 × 1 (P53091) DNA replication licensing factor MCM7 × 1 (A0A6A5Q4N0) DNA replication complex GINS protein PSF1 × 1 (A0A6A5Q203) DNA replication complex GINS protein PSF2 × 1 (A0A6A5PX40) DNA replication complex GINS protein PSF3 × 1 (A0A6L1BWJ4) DNA replication complex GINS protein SLD5 × 1 (Q03406) Cell division control protein 45,Cell division control protein 45 × 1 (Q08032) DNA polymerase alpha-binding protein × 3 (A0A6A5Q5Y5) Leading strand template DNA × 1 Lagging strand template DNA × 1 E3 ubiquitin ligase complex SCF subunit × 1 (A0A6A5Q435) Protein DIA2 × 1 (Q08496) DNA polymerase epsilon catalytic subunit A × 1 (P21951) DNA polymerase epsilon subunit B × 1 (P24482) Topoisomerase 1-associated factor 1 × 1 (P53840) Chromosome segregation in meiosis protein 3 × 1 (Q04659) PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 3 MAGNESIUM ION × 3 ZINC ION × 7 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A6A5Q1S9_YEASX
Isoform —
PDB entities 1
Chains and sequence ranges Author chain 2; PDBConstruct 1–868; UniProt 1–868

DNA replication licensing factor MCM3

Saccharomyces cerevisiae

UniProt P24279

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 DNA replication licensing factor MCM2 × 1 (A0A6A5Q1S9) DNA replication licensing factor MCM4 × 1 (P30665) DNA helicase × 1 (A0A6A5PUY8) DNA replication licensing factor MCM6 × 1 (P53091) DNA replication licensing factor MCM7 × 1 (A0A6A5Q4N0) DNA replication complex GINS protein PSF1 × 1 (A0A6A5Q203) DNA replication complex GINS protein PSF2 × 1 (A0A6A5PX40) DNA replication complex GINS protein PSF3 × 1 (A0A6L1BWJ4) DNA replication complex GINS protein SLD5 × 1 (Q03406) Cell division control protein 45,Cell division control protein 45 × 1 (Q08032) DNA polymerase alpha-binding protein × 3 (A0A6A5Q5Y5) Leading strand template DNA × 1 Lagging strand template DNA × 1 E3 ubiquitin ligase complex SCF subunit × 1 (A0A6A5Q435) Protein DIA2 × 1 (Q08496) DNA polymerase epsilon catalytic subunit A × 1 (P21951) DNA polymerase epsilon subunit B × 1 (P24482) Topoisomerase 1-associated factor 1 × 1 (P53840) Chromosome segregation in meiosis protein 3 × 1 (Q04659) PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 3 MAGNESIUM ION × 3 ZINC ION × 7 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name MCM3_YEAST
Isoform —
PDB entities 2
Chains and sequence ranges Author chain 3; PDBConstruct 39–1009; UniProt 1–971

DNA replication licensing factor MCM4

Saccharomyces cerevisiae

UniProt P30665

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 DNA replication licensing factor MCM2 × 1 (A0A6A5Q1S9) DNA replication licensing factor MCM3 × 1 (P24279) DNA helicase × 1 (A0A6A5PUY8) DNA replication licensing factor MCM6 × 1 (P53091) DNA replication licensing factor MCM7 × 1 (A0A6A5Q4N0) DNA replication complex GINS protein PSF1 × 1 (A0A6A5Q203) DNA replication complex GINS protein PSF2 × 1 (A0A6A5PX40) DNA replication complex GINS protein PSF3 × 1 (A0A6L1BWJ4) DNA replication complex GINS protein SLD5 × 1 (Q03406) Cell division control protein 45,Cell division control protein 45 × 1 (Q08032) DNA polymerase alpha-binding protein × 3 (A0A6A5Q5Y5) Leading strand template DNA × 1 Lagging strand template DNA × 1 E3 ubiquitin ligase complex SCF subunit × 1 (A0A6A5Q435) Protein DIA2 × 1 (Q08496) DNA polymerase epsilon catalytic subunit A × 1 (P21951) DNA polymerase epsilon subunit B × 1 (P24482) Topoisomerase 1-associated factor 1 × 1 (P53840) Chromosome segregation in meiosis protein 3 × 1 (Q04659) PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 3 MAGNESIUM ION × 3 ZINC ION × 7 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name MCM4_YEAST
Isoform —
PDB entities 3
Chains and sequence ranges Author chain 4; PDBConstruct 1–933; UniProt 1–933

DNA helicase

Saccharomyces cerevisiae

UniProt A0A6A5PUY8

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 DNA replication licensing factor MCM2 × 1 (A0A6A5Q1S9) DNA replication licensing factor MCM3 × 1 (P24279) DNA replication licensing factor MCM4 × 1 (P30665) DNA replication licensing factor MCM6 × 1 (P53091) DNA replication licensing factor MCM7 × 1 (A0A6A5Q4N0) DNA replication complex GINS protein PSF1 × 1 (A0A6A5Q203) DNA replication complex GINS protein PSF2 × 1 (A0A6A5PX40) DNA replication complex GINS protein PSF3 × 1 (A0A6L1BWJ4) DNA replication complex GINS protein SLD5 × 1 (Q03406) Cell division control protein 45,Cell division control protein 45 × 1 (Q08032) DNA polymerase alpha-binding protein × 3 (A0A6A5Q5Y5) Leading strand template DNA × 1 Lagging strand template DNA × 1 E3 ubiquitin ligase complex SCF subunit × 1 (A0A6A5Q435) Protein DIA2 × 1 (Q08496) DNA polymerase epsilon catalytic subunit A × 1 (P21951) DNA polymerase epsilon subunit B × 1 (P24482) Topoisomerase 1-associated factor 1 × 1 (P53840) Chromosome segregation in meiosis protein 3 × 1 (Q04659) PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 3 MAGNESIUM ION × 3 ZINC ION × 7 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A6A5PUY8_YEASX
Isoform —
PDB entities 4
Chains and sequence ranges Author chain 5; PDBConstruct 1–775; UniProt 1–775

DNA replication licensing factor MCM6

Saccharomyces cerevisiae

UniProt P53091

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 DNA replication licensing factor MCM2 × 1 (A0A6A5Q1S9) DNA replication licensing factor MCM3 × 1 (P24279) DNA replication licensing factor MCM4 × 1 (P30665) DNA helicase × 1 (A0A6A5PUY8) DNA replication licensing factor MCM7 × 1 (A0A6A5Q4N0) DNA replication complex GINS protein PSF1 × 1 (A0A6A5Q203) DNA replication complex GINS protein PSF2 × 1 (A0A6A5PX40) DNA replication complex GINS protein PSF3 × 1 (A0A6L1BWJ4) DNA replication complex GINS protein SLD5 × 1 (Q03406) Cell division control protein 45,Cell division control protein 45 × 1 (Q08032) DNA polymerase alpha-binding protein × 3 (A0A6A5Q5Y5) Leading strand template DNA × 1 Lagging strand template DNA × 1 E3 ubiquitin ligase complex SCF subunit × 1 (A0A6A5Q435) Protein DIA2 × 1 (Q08496) DNA polymerase epsilon catalytic subunit A × 1 (P21951) DNA polymerase epsilon subunit B × 1 (P24482) Topoisomerase 1-associated factor 1 × 1 (P53840) Chromosome segregation in meiosis protein 3 × 1 (Q04659) PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 3 MAGNESIUM ION × 3 ZINC ION × 7 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name MCM6_YEAST
Isoform —
PDB entities 5
Chains and sequence ranges Author chain 6; PDBConstruct 1–1017; UniProt 1–1017

DNA replication licensing factor MCM7

Saccharomyces cerevisiae

UniProt A0A6A5Q4N0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 DNA replication licensing factor MCM2 × 1 (A0A6A5Q1S9) DNA replication licensing factor MCM3 × 1 (P24279) DNA replication licensing factor MCM4 × 1 (P30665) DNA helicase × 1 (A0A6A5PUY8) DNA replication licensing factor MCM6 × 1 (P53091) DNA replication complex GINS protein PSF1 × 1 (A0A6A5Q203) DNA replication complex GINS protein PSF2 × 1 (A0A6A5PX40) DNA replication complex GINS protein PSF3 × 1 (A0A6L1BWJ4) DNA replication complex GINS protein SLD5 × 1 (Q03406) Cell division control protein 45,Cell division control protein 45 × 1 (Q08032) DNA polymerase alpha-binding protein × 3 (A0A6A5Q5Y5) Leading strand template DNA × 1 Lagging strand template DNA × 1 E3 ubiquitin ligase complex SCF subunit × 1 (A0A6A5Q435) Protein DIA2 × 1 (Q08496) DNA polymerase epsilon catalytic subunit A × 1 (P21951) DNA polymerase epsilon subunit B × 1 (P24482) Topoisomerase 1-associated factor 1 × 1 (P53840) Chromosome segregation in meiosis protein 3 × 1 (Q04659) PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 3 MAGNESIUM ION × 3 ZINC ION × 7 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A6A5Q4N0_YEASX
Isoform —
PDB entities 6
Chains and sequence ranges Author chain 7; PDBConstruct 1–845; UniProt 1–845

DNA replication complex GINS protein PSF1

Saccharomyces cerevisiae

UniProt A0A6A5Q203

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 DNA replication licensing factor MCM2 × 1 (A0A6A5Q1S9) DNA replication licensing factor MCM3 × 1 (P24279) DNA replication licensing factor MCM4 × 1 (P30665) DNA helicase × 1 (A0A6A5PUY8) DNA replication licensing factor MCM6 × 1 (P53091) DNA replication licensing factor MCM7 × 1 (A0A6A5Q4N0) DNA replication complex GINS protein PSF2 × 1 (A0A6A5PX40) DNA replication complex GINS protein PSF3 × 1 (A0A6L1BWJ4) DNA replication complex GINS protein SLD5 × 1 (Q03406) Cell division control protein 45,Cell division control protein 45 × 1 (Q08032) DNA polymerase alpha-binding protein × 3 (A0A6A5Q5Y5) Leading strand template DNA × 1 Lagging strand template DNA × 1 E3 ubiquitin ligase complex SCF subunit × 1 (A0A6A5Q435) Protein DIA2 × 1 (Q08496) DNA polymerase epsilon catalytic subunit A × 1 (P21951) DNA polymerase epsilon subunit B × 1 (P24482) Topoisomerase 1-associated factor 1 × 1 (P53840) Chromosome segregation in meiosis protein 3 × 1 (Q04659) PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 3 MAGNESIUM ION × 3 ZINC ION × 7 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A6A5Q203_YEASX
Isoform —
PDB entities 7
Chains and sequence ranges Author chain A; PDBConstruct 1–208; UniProt 1–208

DNA replication complex GINS protein PSF2

Saccharomyces cerevisiae

UniProt A0A6A5PX40

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 DNA replication licensing factor MCM2 × 1 (A0A6A5Q1S9) DNA replication licensing factor MCM3 × 1 (P24279) DNA replication licensing factor MCM4 × 1 (P30665) DNA helicase × 1 (A0A6A5PUY8) DNA replication licensing factor MCM6 × 1 (P53091) DNA replication licensing factor MCM7 × 1 (A0A6A5Q4N0) DNA replication complex GINS protein PSF1 × 1 (A0A6A5Q203) DNA replication complex GINS protein PSF3 × 1 (A0A6L1BWJ4) DNA replication complex GINS protein SLD5 × 1 (Q03406) Cell division control protein 45,Cell division control protein 45 × 1 (Q08032) DNA polymerase alpha-binding protein × 3 (A0A6A5Q5Y5) Leading strand template DNA × 1 Lagging strand template DNA × 1 E3 ubiquitin ligase complex SCF subunit × 1 (A0A6A5Q435) Protein DIA2 × 1 (Q08496) DNA polymerase epsilon catalytic subunit A × 1 (P21951) DNA polymerase epsilon subunit B × 1 (P24482) Topoisomerase 1-associated factor 1 × 1 (P53840) Chromosome segregation in meiosis protein 3 × 1 (Q04659) PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 3 MAGNESIUM ION × 3 ZINC ION × 7 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A6A5PX40_YEASX
Isoform —
PDB entities 8
Chains and sequence ranges Author chain B; PDBConstruct 1–213; UniProt 1–213

DNA replication complex GINS protein PSF3

Saccharomyces cerevisiae

UniProt A0A6L1BWJ4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 DNA replication licensing factor MCM2 × 1 (A0A6A5Q1S9) DNA replication licensing factor MCM3 × 1 (P24279) DNA replication licensing factor MCM4 × 1 (P30665) DNA helicase × 1 (A0A6A5PUY8) DNA replication licensing factor MCM6 × 1 (P53091) DNA replication licensing factor MCM7 × 1 (A0A6A5Q4N0) DNA replication complex GINS protein PSF1 × 1 (A0A6A5Q203) DNA replication complex GINS protein PSF2 × 1 (A0A6A5PX40) DNA replication complex GINS protein SLD5 × 1 (Q03406) Cell division control protein 45,Cell division control protein 45 × 1 (Q08032) DNA polymerase alpha-binding protein × 3 (A0A6A5Q5Y5) Leading strand template DNA × 1 Lagging strand template DNA × 1 E3 ubiquitin ligase complex SCF subunit × 1 (A0A6A5Q435) Protein DIA2 × 1 (Q08496) DNA polymerase epsilon catalytic subunit A × 1 (P21951) DNA polymerase epsilon subunit B × 1 (P24482) Topoisomerase 1-associated factor 1 × 1 (P53840) Chromosome segregation in meiosis protein 3 × 1 (Q04659) PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 3 MAGNESIUM ION × 3 ZINC ION × 7 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A6L1BWJ4_YEASX
Isoform —
PDB entities 9
Chains and sequence ranges Author chain C; PDBConstruct 1–194; UniProt 23–216

DNA replication complex GINS protein SLD5

Saccharomyces cerevisiae

UniProt Q03406

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 DNA replication licensing factor MCM2 × 1 (A0A6A5Q1S9) DNA replication licensing factor MCM3 × 1 (P24279) DNA replication licensing factor MCM4 × 1 (P30665) DNA helicase × 1 (A0A6A5PUY8) DNA replication licensing factor MCM6 × 1 (P53091) DNA replication licensing factor MCM7 × 1 (A0A6A5Q4N0) DNA replication complex GINS protein PSF1 × 1 (A0A6A5Q203) DNA replication complex GINS protein PSF2 × 1 (A0A6A5PX40) DNA replication complex GINS protein PSF3 × 1 (A0A6L1BWJ4) Cell division control protein 45,Cell division control protein 45 × 1 (Q08032) DNA polymerase alpha-binding protein × 3 (A0A6A5Q5Y5) Leading strand template DNA × 1 Lagging strand template DNA × 1 E3 ubiquitin ligase complex SCF subunit × 1 (A0A6A5Q435) Protein DIA2 × 1 (Q08496) DNA polymerase epsilon catalytic subunit A × 1 (P21951) DNA polymerase epsilon subunit B × 1 (P24482) Topoisomerase 1-associated factor 1 × 1 (P53840) Chromosome segregation in meiosis protein 3 × 1 (Q04659) PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 3 MAGNESIUM ION × 3 ZINC ION × 7 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SLD5_YEAST
Isoform —
PDB entities 10
Chains and sequence ranges Author chain D; PDBConstruct 1–294; UniProt 1–294

Cell division control protein 45,Cell division control protein 45

Saccharomyces cerevisiae

UniProt Q08032

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 DNA replication licensing factor MCM2 × 1 (A0A6A5Q1S9) DNA replication licensing factor MCM3 × 1 (P24279) DNA replication licensing factor MCM4 × 1 (P30665) DNA helicase × 1 (A0A6A5PUY8) DNA replication licensing factor MCM6 × 1 (P53091) DNA replication licensing factor MCM7 × 1 (A0A6A5Q4N0) DNA replication complex GINS protein PSF1 × 1 (A0A6A5Q203) DNA replication complex GINS protein PSF2 × 1 (A0A6A5PX40) DNA replication complex GINS protein PSF3 × 1 (A0A6L1BWJ4) DNA replication complex GINS protein SLD5 × 1 (Q03406) DNA polymerase alpha-binding protein × 3 (A0A6A5Q5Y5) Leading strand template DNA × 1 Lagging strand template DNA × 1 E3 ubiquitin ligase complex SCF subunit × 1 (A0A6A5Q435) Protein DIA2 × 1 (Q08496) DNA polymerase epsilon catalytic subunit A × 1 (P21951) DNA polymerase epsilon subunit B × 1 (P24482) Topoisomerase 1-associated factor 1 × 1 (P53840) Chromosome segregation in meiosis protein 3 × 1 (Q04659) PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 3 MAGNESIUM ION × 3 ZINC ION × 7 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CDC45_YEAST
Isoform —
PDB entities 11
Chains and sequence ranges Author chain E; PDBConstruct 1–197; UniProt 1–197 Author chain E; PDBConstruct 210–657; UniProt 203–650

DNA polymerase alpha-binding protein

Saccharomyces cerevisiae

UniProt A0A6A5Q5Y5

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 DNA replication licensing factor MCM2 × 1 (A0A6A5Q1S9) DNA replication licensing factor MCM3 × 1 (P24279) DNA replication licensing factor MCM4 × 1 (P30665) DNA helicase × 1 (A0A6A5PUY8) DNA replication licensing factor MCM6 × 1 (P53091) DNA replication licensing factor MCM7 × 1 (A0A6A5Q4N0) DNA replication complex GINS protein PSF1 × 1 (A0A6A5Q203) DNA replication complex GINS protein PSF2 × 1 (A0A6A5PX40) DNA replication complex GINS protein PSF3 × 1 (A0A6L1BWJ4) DNA replication complex GINS protein SLD5 × 1 (Q03406) Cell division control protein 45,Cell division control protein 45 × 1 (Q08032) Leading strand template DNA × 1 Lagging strand template DNA × 1 E3 ubiquitin ligase complex SCF subunit × 1 (A0A6A5Q435) Protein DIA2 × 1 (Q08496) DNA polymerase epsilon catalytic subunit A × 1 (P21951) DNA polymerase epsilon subunit B × 1 (P24482) Topoisomerase 1-associated factor 1 × 1 (P53840) Chromosome segregation in meiosis protein 3 × 1 (Q04659) PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 3 MAGNESIUM ION × 3 ZINC ION × 7 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A6A5Q5Y5_YEASX
Isoform —
PDB entities 12
Chains and sequence ranges Author chain F; PDBConstruct 36–962; UniProt 1–927 Author chain G; PDBConstruct 36–962; UniProt 1–927 Author chain H; PDBConstruct 36–962; UniProt 1–927

E3 ubiquitin ligase complex SCF subunit

Saccharomyces cerevisiae

UniProt A0A6A5Q435

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 DNA replication licensing factor MCM2 × 1 (A0A6A5Q1S9) DNA replication licensing factor MCM3 × 1 (P24279) DNA replication licensing factor MCM4 × 1 (P30665) DNA helicase × 1 (A0A6A5PUY8) DNA replication licensing factor MCM6 × 1 (P53091) DNA replication licensing factor MCM7 × 1 (A0A6A5Q4N0) DNA replication complex GINS protein PSF1 × 1 (A0A6A5Q203) DNA replication complex GINS protein PSF2 × 1 (A0A6A5PX40) DNA replication complex GINS protein PSF3 × 1 (A0A6L1BWJ4) DNA replication complex GINS protein SLD5 × 1 (Q03406) Cell division control protein 45,Cell division control protein 45 × 1 (Q08032) DNA polymerase alpha-binding protein × 3 (A0A6A5Q5Y5) Leading strand template DNA × 1 Lagging strand template DNA × 1 Protein DIA2 × 1 (Q08496) DNA polymerase epsilon catalytic subunit A × 1 (P21951) DNA polymerase epsilon subunit B × 1 (P24482) Topoisomerase 1-associated factor 1 × 1 (P53840) Chromosome segregation in meiosis protein 3 × 1 (Q04659) PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 3 MAGNESIUM ION × 3 ZINC ION × 7 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A6A5Q435_YEASX
Isoform —
PDB entities 15
Chains and sequence ranges Author chain K; PDBConstruct 1–194; UniProt 1–194

Protein DIA2

Saccharomyces cerevisiae

UniProt Q08496

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 DNA replication licensing factor MCM2 × 1 (A0A6A5Q1S9) DNA replication licensing factor MCM3 × 1 (P24279) DNA replication licensing factor MCM4 × 1 (P30665) DNA helicase × 1 (A0A6A5PUY8) DNA replication licensing factor MCM6 × 1 (P53091) DNA replication licensing factor MCM7 × 1 (A0A6A5Q4N0) DNA replication complex GINS protein PSF1 × 1 (A0A6A5Q203) DNA replication complex GINS protein PSF2 × 1 (A0A6A5PX40) DNA replication complex GINS protein PSF3 × 1 (A0A6L1BWJ4) DNA replication complex GINS protein SLD5 × 1 (Q03406) Cell division control protein 45,Cell division control protein 45 × 1 (Q08032) DNA polymerase alpha-binding protein × 3 (A0A6A5Q5Y5) Leading strand template DNA × 1 Lagging strand template DNA × 1 E3 ubiquitin ligase complex SCF subunit × 1 (A0A6A5Q435) DNA polymerase epsilon catalytic subunit A × 1 (P21951) DNA polymerase epsilon subunit B × 1 (P24482) Topoisomerase 1-associated factor 1 × 1 (P53840) Chromosome segregation in meiosis protein 3 × 1 (Q04659) PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 3 MAGNESIUM ION × 3 ZINC ION × 7 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name DIA2_YEAST
Isoform —
PDB entities 16
Chains and sequence ranges Author chain L; PDBConstruct 4–735; UniProt 1–732

DNA polymerase epsilon catalytic subunit A

Saccharomyces cerevisiae

UniProt P21951

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 DNA replication licensing factor MCM2 × 1 (A0A6A5Q1S9) DNA replication licensing factor MCM3 × 1 (P24279) DNA replication licensing factor MCM4 × 1 (P30665) DNA helicase × 1 (A0A6A5PUY8) DNA replication licensing factor MCM6 × 1 (P53091) DNA replication licensing factor MCM7 × 1 (A0A6A5Q4N0) DNA replication complex GINS protein PSF1 × 1 (A0A6A5Q203) DNA replication complex GINS protein PSF2 × 1 (A0A6A5PX40) DNA replication complex GINS protein PSF3 × 1 (A0A6L1BWJ4) DNA replication complex GINS protein SLD5 × 1 (Q03406) Cell division control protein 45,Cell division control protein 45 × 1 (Q08032) DNA polymerase alpha-binding protein × 3 (A0A6A5Q5Y5) Leading strand template DNA × 1 Lagging strand template DNA × 1 E3 ubiquitin ligase complex SCF subunit × 1 (A0A6A5Q435) Protein DIA2 × 1 (Q08496) DNA polymerase epsilon subunit B × 1 (P24482) Topoisomerase 1-associated factor 1 × 1 (P53840) Chromosome segregation in meiosis protein 3 × 1 (Q04659) PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 3 MAGNESIUM ION × 3 ZINC ION × 7 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name DPOE_YEAST
Isoform —
PDB entities 17
Chains and sequence ranges Author chain Q; PDBConstruct 1–2222; UniProt 1–2222

DNA polymerase epsilon subunit B

Saccharomyces cerevisiae

UniProt P24482

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 DNA replication licensing factor MCM2 × 1 (A0A6A5Q1S9) DNA replication licensing factor MCM3 × 1 (P24279) DNA replication licensing factor MCM4 × 1 (P30665) DNA helicase × 1 (A0A6A5PUY8) DNA replication licensing factor MCM6 × 1 (P53091) DNA replication licensing factor MCM7 × 1 (A0A6A5Q4N0) DNA replication complex GINS protein PSF1 × 1 (A0A6A5Q203) DNA replication complex GINS protein PSF2 × 1 (A0A6A5PX40) DNA replication complex GINS protein PSF3 × 1 (A0A6L1BWJ4) DNA replication complex GINS protein SLD5 × 1 (Q03406) Cell division control protein 45,Cell division control protein 45 × 1 (Q08032) DNA polymerase alpha-binding protein × 3 (A0A6A5Q5Y5) Leading strand template DNA × 1 Lagging strand template DNA × 1 E3 ubiquitin ligase complex SCF subunit × 1 (A0A6A5Q435) Protein DIA2 × 1 (Q08496) DNA polymerase epsilon catalytic subunit A × 1 (P21951) Topoisomerase 1-associated factor 1 × 1 (P53840) Chromosome segregation in meiosis protein 3 × 1 (Q04659) PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 3 MAGNESIUM ION × 3 ZINC ION × 7 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name DPB2_YEAST
Isoform —
PDB entities 18
Chains and sequence ranges Author chain R; PDBConstruct 1–689; UniProt 1–689

Topoisomerase 1-associated factor 1

Saccharomyces cerevisiae

UniProt P53840

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 DNA replication licensing factor MCM2 × 1 (A0A6A5Q1S9) DNA replication licensing factor MCM3 × 1 (P24279) DNA replication licensing factor MCM4 × 1 (P30665) DNA helicase × 1 (A0A6A5PUY8) DNA replication licensing factor MCM6 × 1 (P53091) DNA replication licensing factor MCM7 × 1 (A0A6A5Q4N0) DNA replication complex GINS protein PSF1 × 1 (A0A6A5Q203) DNA replication complex GINS protein PSF2 × 1 (A0A6A5PX40) DNA replication complex GINS protein PSF3 × 1 (A0A6L1BWJ4) DNA replication complex GINS protein SLD5 × 1 (Q03406) Cell division control protein 45,Cell division control protein 45 × 1 (Q08032) DNA polymerase alpha-binding protein × 3 (A0A6A5Q5Y5) Leading strand template DNA × 1 Lagging strand template DNA × 1 E3 ubiquitin ligase complex SCF subunit × 1 (A0A6A5Q435) Protein DIA2 × 1 (Q08496) DNA polymerase epsilon catalytic subunit A × 1 (P21951) DNA polymerase epsilon subunit B × 1 (P24482) Chromosome segregation in meiosis protein 3 × 1 (Q04659) PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 3 MAGNESIUM ION × 3 ZINC ION × 7 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TOF1_YEAST
Isoform —
PDB entities 19
Chains and sequence ranges Author chain X; PDBConstruct 1–1238; UniProt 1–1238

Chromosome segregation in meiosis protein 3

Saccharomyces cerevisiae

UniProt Q04659

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 20 DNA 2 DNA replication licensing factor MCM2 × 1 (A0A6A5Q1S9) DNA replication licensing factor MCM3 × 1 (P24279) DNA replication licensing factor MCM4 × 1 (P30665) DNA helicase × 1 (A0A6A5PUY8) DNA replication licensing factor MCM6 × 1 (P53091) DNA replication licensing factor MCM7 × 1 (A0A6A5Q4N0) DNA replication complex GINS protein PSF1 × 1 (A0A6A5Q203) DNA replication complex GINS protein PSF2 × 1 (A0A6A5PX40) DNA replication complex GINS protein PSF3 × 1 (A0A6L1BWJ4) DNA replication complex GINS protein SLD5 × 1 (Q03406) Cell division control protein 45,Cell division control protein 45 × 1 (Q08032) DNA polymerase alpha-binding protein × 3 (A0A6A5Q5Y5) Leading strand template DNA × 1 Lagging strand template DNA × 1 E3 ubiquitin ligase complex SCF subunit × 1 (A0A6A5Q435) Protein DIA2 × 1 (Q08496) DNA polymerase epsilon catalytic subunit A × 1 (P21951) DNA polymerase epsilon subunit B × 1 (P24482) Topoisomerase 1-associated factor 1 × 1 (P53840) PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 3 MAGNESIUM ION × 3 ZINC ION × 7 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CSM3_YEAST
Isoform —
PDB entities 20
Chains and sequence ranges Author chain Y; PDBConstruct 3–319; UniProt 1–317

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

▼

2. Structure Basics 2. Structure Basics

Entry ID entry_id7pmk
Deposition date deposition_date2021-09-02
Structure title titleS. cerevisiae replisome-SCF(Dia2) complex bound to double-stranded DNA (conformation I)
Keywords keywordsGenome stability, DNA replication, Ubiquitination, termination, replisome, cryo-EM, CMG, SCF(Dia2), REPLICATION; REPLICATION
Experimental Method methodELECTRON MICROSCOPY
▼

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

7pmk__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

7pmk__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

7pmk__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)74.76 Å
Rg (electron density)75.00 Å
Total Rg74.91 Å
Atom count74697
Residues9198
Excluded volume1333900 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 7pmk__assembly_1__model_1 22-meric (22) Success 4.1.3-1-20251215 (887e7ef) View Download
▶

4. Crystallography and Experiment 4. Crystallography & Experiment

▶

5. Entities and Polymers Entities & Polymers (23)

▶

7. Citations (1)