8ana

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit

Method: ELECTRON MICROSCOPY Dmax: 226.5 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

50S ribosomal protein L33

OrganismNot specified

UniProt A0A3S5YPG8

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 30 RNA 2 PDB declaration: 32-meric(32) Consistent with all polymer counts Chain 0; UniProt 1–55 Not recorded 50S ribosomal protein L34 × 1 (A0A8X6EVB8) 50S ribosomal protein L35 × 1 (A0A8S0FT45) 50S ribosomal protein L36 × 1 (A0A2X1PTA3) 50S ribosomal protein L31 × 1 (C3SIV2) Drosocin1 × 1 (B4MNS1) 23S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (A0A7L6YWH1) 50S ribosomal protein L3 × 1 (C3SQU2) 50S ribosomal protein L4 × 1 (D8A1N0) 50S ribosomal protein L5 × 1 (D6IEK6) 50S ribosomal protein L6 × 1 (C3SR17) 50S ribosomal protein L9 × 1 (C3SFP2) 50S ribosomal protein L13 × 1 (A0A656YGQ7) 50S ribosomal protein L14 × 1 (C3SQZ2) 50S ribosomal protein L15 × 1 (P02413) 50S ribosomal protein L16 × 1 (A0A0H3EMH6) 50S ribosomal protein L17 × 1 (A0A1X3JBW6) 50S ribosomal protein L18 × 1 (A0A514EKV0) 50S ribosomal protein L19 × 1 (A0A370V6W8) 50S ribosomal protein L20 × 1 (A0A378BCJ4) 50S ribosomal protein L21 × 1 (A0A0E2L2H1) 50S ribosomal protein L22 × 1 (A0A0F6B7N1) 50S ribosomal protein L23 × 1 (D7Y3D8) 50S ribosomal protein L24 × 1 (S1E9P3) 50S ribosomal protein L25 × 1 (P68919) 50S ribosomal protein L27 × 1 (C3SSG7) 50S ribosomal protein L28 × 1 (C3SME2) 50S ribosomal protein L29 × 1 (P0A7M6) 50S ribosomal protein L30 × 1 (C3SR32) 50S ribosomal protein L32 × 1 (A0A657HW13) ZN ZINC ION × 2 A2G 2-acetamido-2-deoxy-alpha-D-galactopyranose × 1 MG MAGNESIUM ION × 216 SPM SPERMINE × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE-PROPANE Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A3S5YPG8_SALER
Isoform
PDB entities 1
Chains and sequence ranges Author chain 0; PDBConstruct 1–55; UniProt 1–55

50S ribosomal protein L34

OrganismNot specified

UniProt A0A8X6EVB8

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 30 RNA 2 PDB declaration: 32-meric(32) Consistent with all polymer counts Chain 1; UniProt 1–46 Not recorded 50S ribosomal protein L33 × 1 (A0A3S5YPG8) 50S ribosomal protein L35 × 1 (A0A8S0FT45) 50S ribosomal protein L36 × 1 (A0A2X1PTA3) 50S ribosomal protein L31 × 1 (C3SIV2) Drosocin1 × 1 (B4MNS1) 23S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (A0A7L6YWH1) 50S ribosomal protein L3 × 1 (C3SQU2) 50S ribosomal protein L4 × 1 (D8A1N0) 50S ribosomal protein L5 × 1 (D6IEK6) 50S ribosomal protein L6 × 1 (C3SR17) 50S ribosomal protein L9 × 1 (C3SFP2) 50S ribosomal protein L13 × 1 (A0A656YGQ7) 50S ribosomal protein L14 × 1 (C3SQZ2) 50S ribosomal protein L15 × 1 (P02413) 50S ribosomal protein L16 × 1 (A0A0H3EMH6) 50S ribosomal protein L17 × 1 (A0A1X3JBW6) 50S ribosomal protein L18 × 1 (A0A514EKV0) 50S ribosomal protein L19 × 1 (A0A370V6W8) 50S ribosomal protein L20 × 1 (A0A378BCJ4) 50S ribosomal protein L21 × 1 (A0A0E2L2H1) 50S ribosomal protein L22 × 1 (A0A0F6B7N1) 50S ribosomal protein L23 × 1 (D7Y3D8) 50S ribosomal protein L24 × 1 (S1E9P3) 50S ribosomal protein L25 × 1 (P68919) 50S ribosomal protein L27 × 1 (C3SSG7) 50S ribosomal protein L28 × 1 (C3SME2) 50S ribosomal protein L29 × 1 (P0A7M6) 50S ribosomal protein L30 × 1 (C3SR32) 50S ribosomal protein L32 × 1 (A0A657HW13) ZN ZINC ION × 2 A2G 2-acetamido-2-deoxy-alpha-D-galactopyranose × 1 MG MAGNESIUM ION × 216 SPM SPERMINE × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE-PROPANE Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A8X6EVB8_SALDU
Isoform
PDB entities 2
Chains and sequence ranges Author chain 1; PDBConstruct 1–46; UniProt 1–46

50S ribosomal protein L35

OrganismNot specified

UniProt A0A8S0FT45

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 30 RNA 2 PDB declaration: 32-meric(32) Consistent with all polymer counts Chain 2; UniProt 6–70 Not recorded 50S ribosomal protein L33 × 1 (A0A3S5YPG8) 50S ribosomal protein L34 × 1 (A0A8X6EVB8) 50S ribosomal protein L36 × 1 (A0A2X1PTA3) 50S ribosomal protein L31 × 1 (C3SIV2) Drosocin1 × 1 (B4MNS1) 23S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (A0A7L6YWH1) 50S ribosomal protein L3 × 1 (C3SQU2) 50S ribosomal protein L4 × 1 (D8A1N0) 50S ribosomal protein L5 × 1 (D6IEK6) 50S ribosomal protein L6 × 1 (C3SR17) 50S ribosomal protein L9 × 1 (C3SFP2) 50S ribosomal protein L13 × 1 (A0A656YGQ7) 50S ribosomal protein L14 × 1 (C3SQZ2) 50S ribosomal protein L15 × 1 (P02413) 50S ribosomal protein L16 × 1 (A0A0H3EMH6) 50S ribosomal protein L17 × 1 (A0A1X3JBW6) 50S ribosomal protein L18 × 1 (A0A514EKV0) 50S ribosomal protein L19 × 1 (A0A370V6W8) 50S ribosomal protein L20 × 1 (A0A378BCJ4) 50S ribosomal protein L21 × 1 (A0A0E2L2H1) 50S ribosomal protein L22 × 1 (A0A0F6B7N1) 50S ribosomal protein L23 × 1 (D7Y3D8) 50S ribosomal protein L24 × 1 (S1E9P3) 50S ribosomal protein L25 × 1 (P68919) 50S ribosomal protein L27 × 1 (C3SSG7) 50S ribosomal protein L28 × 1 (C3SME2) 50S ribosomal protein L29 × 1 (P0A7M6) 50S ribosomal protein L30 × 1 (C3SR32) 50S ribosomal protein L32 × 1 (A0A657HW13) ZN ZINC ION × 2 A2G 2-acetamido-2-deoxy-alpha-D-galactopyranose × 1 MG MAGNESIUM ION × 216 SPM SPERMINE × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE-PROPANE Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A8S0FT45_ECOLX
Isoform
PDB entities 3
Chains and sequence ranges Author chain 2; PDBConstruct 1–65; UniProt 6–70

50S ribosomal protein L36

OrganismNot specified

UniProt A0A2X1PTA3

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 30 RNA 2 PDB declaration: 32-meric(32) Consistent with all polymer counts Chain 3; UniProt 1–38 Not recorded 50S ribosomal protein L33 × 1 (A0A3S5YPG8) 50S ribosomal protein L34 × 1 (A0A8X6EVB8) 50S ribosomal protein L35 × 1 (A0A8S0FT45) 50S ribosomal protein L31 × 1 (C3SIV2) Drosocin1 × 1 (B4MNS1) 23S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (A0A7L6YWH1) 50S ribosomal protein L3 × 1 (C3SQU2) 50S ribosomal protein L4 × 1 (D8A1N0) 50S ribosomal protein L5 × 1 (D6IEK6) 50S ribosomal protein L6 × 1 (C3SR17) 50S ribosomal protein L9 × 1 (C3SFP2) 50S ribosomal protein L13 × 1 (A0A656YGQ7) 50S ribosomal protein L14 × 1 (C3SQZ2) 50S ribosomal protein L15 × 1 (P02413) 50S ribosomal protein L16 × 1 (A0A0H3EMH6) 50S ribosomal protein L17 × 1 (A0A1X3JBW6) 50S ribosomal protein L18 × 1 (A0A514EKV0) 50S ribosomal protein L19 × 1 (A0A370V6W8) 50S ribosomal protein L20 × 1 (A0A378BCJ4) 50S ribosomal protein L21 × 1 (A0A0E2L2H1) 50S ribosomal protein L22 × 1 (A0A0F6B7N1) 50S ribosomal protein L23 × 1 (D7Y3D8) 50S ribosomal protein L24 × 1 (S1E9P3) 50S ribosomal protein L25 × 1 (P68919) 50S ribosomal protein L27 × 1 (C3SSG7) 50S ribosomal protein L28 × 1 (C3SME2) 50S ribosomal protein L29 × 1 (P0A7M6) 50S ribosomal protein L30 × 1 (C3SR32) 50S ribosomal protein L32 × 1 (A0A657HW13) ZN ZINC ION × 2 A2G 2-acetamido-2-deoxy-alpha-D-galactopyranose × 1 MG MAGNESIUM ION × 216 SPM SPERMINE × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE-PROPANE Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

17 other PDB entries and 17 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A2X1PTA3_ECOLX
Isoform
PDB entities 4
Chains and sequence ranges Author chain 3; PDBConstruct 1–38; UniProt 1–38

50S ribosomal protein L31

OrganismNot specified

UniProt C3SIV2

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 30 RNA 2 PDB declaration: 32-meric(32) Consistent with all polymer counts Chain 4; UniProt 1–70 Not recorded 50S ribosomal protein L33 × 1 (A0A3S5YPG8) 50S ribosomal protein L34 × 1 (A0A8X6EVB8) 50S ribosomal protein L35 × 1 (A0A8S0FT45) 50S ribosomal protein L36 × 1 (A0A2X1PTA3) Drosocin1 × 1 (B4MNS1) 23S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (A0A7L6YWH1) 50S ribosomal protein L3 × 1 (C3SQU2) 50S ribosomal protein L4 × 1 (D8A1N0) 50S ribosomal protein L5 × 1 (D6IEK6) 50S ribosomal protein L6 × 1 (C3SR17) 50S ribosomal protein L9 × 1 (C3SFP2) 50S ribosomal protein L13 × 1 (A0A656YGQ7) 50S ribosomal protein L14 × 1 (C3SQZ2) 50S ribosomal protein L15 × 1 (P02413) 50S ribosomal protein L16 × 1 (A0A0H3EMH6) 50S ribosomal protein L17 × 1 (A0A1X3JBW6) 50S ribosomal protein L18 × 1 (A0A514EKV0) 50S ribosomal protein L19 × 1 (A0A370V6W8) 50S ribosomal protein L20 × 1 (A0A378BCJ4) 50S ribosomal protein L21 × 1 (A0A0E2L2H1) 50S ribosomal protein L22 × 1 (A0A0F6B7N1) 50S ribosomal protein L23 × 1 (D7Y3D8) 50S ribosomal protein L24 × 1 (S1E9P3) 50S ribosomal protein L25 × 1 (P68919) 50S ribosomal protein L27 × 1 (C3SSG7) 50S ribosomal protein L28 × 1 (C3SME2) 50S ribosomal protein L29 × 1 (P0A7M6) 50S ribosomal protein L30 × 1 (C3SR32) 50S ribosomal protein L32 × 1 (A0A657HW13) ZN ZINC ION × 2 A2G 2-acetamido-2-deoxy-alpha-D-galactopyranose × 1 MG MAGNESIUM ION × 216 SPM SPERMINE × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE-PROPANE Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

5 other PDB entries and 5 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name C3SIV2_ECOLX
Isoform
PDB entities 5
Chains and sequence ranges Author chain 4; PDBConstruct 1–70; UniProt 1–70

Drosocin1

OrganismNot specified

UniProt B4MNS1

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 30 RNA 2 PDB declaration: 32-meric(32) Consistent with all polymer counts Chain A; UniProt 23–41 Not recorded 50S ribosomal protein L33 × 1 (A0A3S5YPG8) 50S ribosomal protein L34 × 1 (A0A8X6EVB8) 50S ribosomal protein L35 × 1 (A0A8S0FT45) 50S ribosomal protein L36 × 1 (A0A2X1PTA3) 50S ribosomal protein L31 × 1 (C3SIV2) 23S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (A0A7L6YWH1) 50S ribosomal protein L3 × 1 (C3SQU2) 50S ribosomal protein L4 × 1 (D8A1N0) 50S ribosomal protein L5 × 1 (D6IEK6) 50S ribosomal protein L6 × 1 (C3SR17) 50S ribosomal protein L9 × 1 (C3SFP2) 50S ribosomal protein L13 × 1 (A0A656YGQ7) 50S ribosomal protein L14 × 1 (C3SQZ2) 50S ribosomal protein L15 × 1 (P02413) 50S ribosomal protein L16 × 1 (A0A0H3EMH6) 50S ribosomal protein L17 × 1 (A0A1X3JBW6) 50S ribosomal protein L18 × 1 (A0A514EKV0) 50S ribosomal protein L19 × 1 (A0A370V6W8) 50S ribosomal protein L20 × 1 (A0A378BCJ4) 50S ribosomal protein L21 × 1 (A0A0E2L2H1) 50S ribosomal protein L22 × 1 (A0A0F6B7N1) 50S ribosomal protein L23 × 1 (D7Y3D8) 50S ribosomal protein L24 × 1 (S1E9P3) 50S ribosomal protein L25 × 1 (P68919) 50S ribosomal protein L27 × 1 (C3SSG7) 50S ribosomal protein L28 × 1 (C3SME2) 50S ribosomal protein L29 × 1 (P0A7M6) 50S ribosomal protein L30 × 1 (C3SR32) 50S ribosomal protein L32 × 1 (A0A657HW13) ZN ZINC ION × 2 A2G 2-acetamido-2-deoxy-alpha-D-galactopyranose × 1 MG MAGNESIUM ION × 216 SPM SPERMINE × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE-PROPANE Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name B4MNS1_DROWI
Isoform
PDB entities 6
Chains and sequence ranges Author chain A; PDBConstruct 1–19; UniProt 23–41

50S ribosomal protein L2

OrganismNot specified

UniProt A0A7L6YWH1

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 30 RNA 2 PDB declaration: 32-meric(32) Consistent with all polymer counts Chain c; UniProt 1–273 Not recorded 50S ribosomal protein L33 × 1 (A0A3S5YPG8) 50S ribosomal protein L34 × 1 (A0A8X6EVB8) 50S ribosomal protein L35 × 1 (A0A8S0FT45) 50S ribosomal protein L36 × 1 (A0A2X1PTA3) 50S ribosomal protein L31 × 1 (C3SIV2) Drosocin1 × 1 (B4MNS1) 23S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L3 × 1 (C3SQU2) 50S ribosomal protein L4 × 1 (D8A1N0) 50S ribosomal protein L5 × 1 (D6IEK6) 50S ribosomal protein L6 × 1 (C3SR17) 50S ribosomal protein L9 × 1 (C3SFP2) 50S ribosomal protein L13 × 1 (A0A656YGQ7) 50S ribosomal protein L14 × 1 (C3SQZ2) 50S ribosomal protein L15 × 1 (P02413) 50S ribosomal protein L16 × 1 (A0A0H3EMH6) 50S ribosomal protein L17 × 1 (A0A1X3JBW6) 50S ribosomal protein L18 × 1 (A0A514EKV0) 50S ribosomal protein L19 × 1 (A0A370V6W8) 50S ribosomal protein L20 × 1 (A0A378BCJ4) 50S ribosomal protein L21 × 1 (A0A0E2L2H1) 50S ribosomal protein L22 × 1 (A0A0F6B7N1) 50S ribosomal protein L23 × 1 (D7Y3D8) 50S ribosomal protein L24 × 1 (S1E9P3) 50S ribosomal protein L25 × 1 (P68919) 50S ribosomal protein L27 × 1 (C3SSG7) 50S ribosomal protein L28 × 1 (C3SME2) 50S ribosomal protein L29 × 1 (P0A7M6) 50S ribosomal protein L30 × 1 (C3SR32) 50S ribosomal protein L32 × 1 (A0A657HW13) ZN ZINC ION × 2 A2G 2-acetamido-2-deoxy-alpha-D-galactopyranose × 1 MG MAGNESIUM ION × 216 SPM SPERMINE × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE-PROPANE Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A7L6YWH1_9ENTR
Isoform
PDB entities 9
Chains and sequence ranges Author chain c; PDBConstruct 1–273; UniProt 1–273

50S ribosomal protein L3

OrganismNot specified

UniProt C3SQU2

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 30 RNA 2 PDB declaration: 32-meric(32) Consistent with all polymer counts Chain d; UniProt 1–209 Non-standard monomer:Yes (specific site not provided by mmCIF) 50S ribosomal protein L33 × 1 (A0A3S5YPG8) 50S ribosomal protein L34 × 1 (A0A8X6EVB8) 50S ribosomal protein L35 × 1 (A0A8S0FT45) 50S ribosomal protein L36 × 1 (A0A2X1PTA3) 50S ribosomal protein L31 × 1 (C3SIV2) Drosocin1 × 1 (B4MNS1) 23S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (A0A7L6YWH1) 50S ribosomal protein L4 × 1 (D8A1N0) 50S ribosomal protein L5 × 1 (D6IEK6) 50S ribosomal protein L6 × 1 (C3SR17) 50S ribosomal protein L9 × 1 (C3SFP2) 50S ribosomal protein L13 × 1 (A0A656YGQ7) 50S ribosomal protein L14 × 1 (C3SQZ2) 50S ribosomal protein L15 × 1 (P02413) 50S ribosomal protein L16 × 1 (A0A0H3EMH6) 50S ribosomal protein L17 × 1 (A0A1X3JBW6) 50S ribosomal protein L18 × 1 (A0A514EKV0) 50S ribosomal protein L19 × 1 (A0A370V6W8) 50S ribosomal protein L20 × 1 (A0A378BCJ4) 50S ribosomal protein L21 × 1 (A0A0E2L2H1) 50S ribosomal protein L22 × 1 (A0A0F6B7N1) 50S ribosomal protein L23 × 1 (D7Y3D8) 50S ribosomal protein L24 × 1 (S1E9P3) 50S ribosomal protein L25 × 1 (P68919) 50S ribosomal protein L27 × 1 (C3SSG7) 50S ribosomal protein L28 × 1 (C3SME2) 50S ribosomal protein L29 × 1 (P0A7M6) 50S ribosomal protein L30 × 1 (C3SR32) 50S ribosomal protein L32 × 1 (A0A657HW13) ZN ZINC ION × 2 A2G 2-acetamido-2-deoxy-alpha-D-galactopyranose × 1 MG MAGNESIUM ION × 216 SPM SPERMINE × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE-PROPANE Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

24 other PDB entries and 24 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name C3SQU2_ECOLX
Isoform
PDB entities 10
Chains and sequence ranges Author chain d; PDBConstruct 1–209; UniProt 1–209

50S ribosomal protein L4

OrganismNot specified

UniProt D8A1N0

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 30 RNA 2 PDB declaration: 32-meric(32) Consistent with all polymer counts Chain e; UniProt 1–201 Not recorded 50S ribosomal protein L33 × 1 (A0A3S5YPG8) 50S ribosomal protein L34 × 1 (A0A8X6EVB8) 50S ribosomal protein L35 × 1 (A0A8S0FT45) 50S ribosomal protein L36 × 1 (A0A2X1PTA3) 50S ribosomal protein L31 × 1 (C3SIV2) Drosocin1 × 1 (B4MNS1) 23S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (A0A7L6YWH1) 50S ribosomal protein L3 × 1 (C3SQU2) 50S ribosomal protein L5 × 1 (D6IEK6) 50S ribosomal protein L6 × 1 (C3SR17) 50S ribosomal protein L9 × 1 (C3SFP2) 50S ribosomal protein L13 × 1 (A0A656YGQ7) 50S ribosomal protein L14 × 1 (C3SQZ2) 50S ribosomal protein L15 × 1 (P02413) 50S ribosomal protein L16 × 1 (A0A0H3EMH6) 50S ribosomal protein L17 × 1 (A0A1X3JBW6) 50S ribosomal protein L18 × 1 (A0A514EKV0) 50S ribosomal protein L19 × 1 (A0A370V6W8) 50S ribosomal protein L20 × 1 (A0A378BCJ4) 50S ribosomal protein L21 × 1 (A0A0E2L2H1) 50S ribosomal protein L22 × 1 (A0A0F6B7N1) 50S ribosomal protein L23 × 1 (D7Y3D8) 50S ribosomal protein L24 × 1 (S1E9P3) 50S ribosomal protein L25 × 1 (P68919) 50S ribosomal protein L27 × 1 (C3SSG7) 50S ribosomal protein L28 × 1 (C3SME2) 50S ribosomal protein L29 × 1 (P0A7M6) 50S ribosomal protein L30 × 1 (C3SR32) 50S ribosomal protein L32 × 1 (A0A657HW13) ZN ZINC ION × 2 A2G 2-acetamido-2-deoxy-alpha-D-galactopyranose × 1 MG MAGNESIUM ION × 216 SPM SPERMINE × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE-PROPANE Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name D8A1N0_ECOMS
Isoform
PDB entities 11
Chains and sequence ranges Author chain e; PDBConstruct 1–201; UniProt 1–201

50S ribosomal protein L5

OrganismNot specified

UniProt D6IEK6

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 30 RNA 2 PDB declaration: 32-meric(32) Consistent with all polymer counts Chain f; UniProt 1–179 Not recorded 50S ribosomal protein L33 × 1 (A0A3S5YPG8) 50S ribosomal protein L34 × 1 (A0A8X6EVB8) 50S ribosomal protein L35 × 1 (A0A8S0FT45) 50S ribosomal protein L36 × 1 (A0A2X1PTA3) 50S ribosomal protein L31 × 1 (C3SIV2) Drosocin1 × 1 (B4MNS1) 23S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (A0A7L6YWH1) 50S ribosomal protein L3 × 1 (C3SQU2) 50S ribosomal protein L4 × 1 (D8A1N0) 50S ribosomal protein L6 × 1 (C3SR17) 50S ribosomal protein L9 × 1 (C3SFP2) 50S ribosomal protein L13 × 1 (A0A656YGQ7) 50S ribosomal protein L14 × 1 (C3SQZ2) 50S ribosomal protein L15 × 1 (P02413) 50S ribosomal protein L16 × 1 (A0A0H3EMH6) 50S ribosomal protein L17 × 1 (A0A1X3JBW6) 50S ribosomal protein L18 × 1 (A0A514EKV0) 50S ribosomal protein L19 × 1 (A0A370V6W8) 50S ribosomal protein L20 × 1 (A0A378BCJ4) 50S ribosomal protein L21 × 1 (A0A0E2L2H1) 50S ribosomal protein L22 × 1 (A0A0F6B7N1) 50S ribosomal protein L23 × 1 (D7Y3D8) 50S ribosomal protein L24 × 1 (S1E9P3) 50S ribosomal protein L25 × 1 (P68919) 50S ribosomal protein L27 × 1 (C3SSG7) 50S ribosomal protein L28 × 1 (C3SME2) 50S ribosomal protein L29 × 1 (P0A7M6) 50S ribosomal protein L30 × 1 (C3SR32) 50S ribosomal protein L32 × 1 (A0A657HW13) ZN ZINC ION × 2 A2G 2-acetamido-2-deoxy-alpha-D-galactopyranose × 1 MG MAGNESIUM ION × 216 SPM SPERMINE × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE-PROPANE Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

8 other PDB entries and 8 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name D6IEK6_ECOLX
Isoform
PDB entities 12
Chains and sequence ranges Author chain f; PDBConstruct 1–179; UniProt 1–179

50S ribosomal protein L6

OrganismNot specified

UniProt C3SR17

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 30 RNA 2 PDB declaration: 32-meric(32) Consistent with all polymer counts Chain g; UniProt 1–177 Not recorded 50S ribosomal protein L33 × 1 (A0A3S5YPG8) 50S ribosomal protein L34 × 1 (A0A8X6EVB8) 50S ribosomal protein L35 × 1 (A0A8S0FT45) 50S ribosomal protein L36 × 1 (A0A2X1PTA3) 50S ribosomal protein L31 × 1 (C3SIV2) Drosocin1 × 1 (B4MNS1) 23S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (A0A7L6YWH1) 50S ribosomal protein L3 × 1 (C3SQU2) 50S ribosomal protein L4 × 1 (D8A1N0) 50S ribosomal protein L5 × 1 (D6IEK6) 50S ribosomal protein L9 × 1 (C3SFP2) 50S ribosomal protein L13 × 1 (A0A656YGQ7) 50S ribosomal protein L14 × 1 (C3SQZ2) 50S ribosomal protein L15 × 1 (P02413) 50S ribosomal protein L16 × 1 (A0A0H3EMH6) 50S ribosomal protein L17 × 1 (A0A1X3JBW6) 50S ribosomal protein L18 × 1 (A0A514EKV0) 50S ribosomal protein L19 × 1 (A0A370V6W8) 50S ribosomal protein L20 × 1 (A0A378BCJ4) 50S ribosomal protein L21 × 1 (A0A0E2L2H1) 50S ribosomal protein L22 × 1 (A0A0F6B7N1) 50S ribosomal protein L23 × 1 (D7Y3D8) 50S ribosomal protein L24 × 1 (S1E9P3) 50S ribosomal protein L25 × 1 (P68919) 50S ribosomal protein L27 × 1 (C3SSG7) 50S ribosomal protein L28 × 1 (C3SME2) 50S ribosomal protein L29 × 1 (P0A7M6) 50S ribosomal protein L30 × 1 (C3SR32) 50S ribosomal protein L32 × 1 (A0A657HW13) ZN ZINC ION × 2 A2G 2-acetamido-2-deoxy-alpha-D-galactopyranose × 1 MG MAGNESIUM ION × 216 SPM SPERMINE × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE-PROPANE Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

68 other PDB entries and 68 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name C3SR17_ECOLX
Isoform
PDB entities 13
Chains and sequence ranges Author chain g; PDBConstruct 1–177; UniProt 1–177

50S ribosomal protein L9

OrganismNot specified

UniProt C3SFP2

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 30 RNA 2 PDB declaration: 32-meric(32) Consistent with all polymer counts Chain h; UniProt 1–149 Not recorded 50S ribosomal protein L33 × 1 (A0A3S5YPG8) 50S ribosomal protein L34 × 1 (A0A8X6EVB8) 50S ribosomal protein L35 × 1 (A0A8S0FT45) 50S ribosomal protein L36 × 1 (A0A2X1PTA3) 50S ribosomal protein L31 × 1 (C3SIV2) Drosocin1 × 1 (B4MNS1) 23S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (A0A7L6YWH1) 50S ribosomal protein L3 × 1 (C3SQU2) 50S ribosomal protein L4 × 1 (D8A1N0) 50S ribosomal protein L5 × 1 (D6IEK6) 50S ribosomal protein L6 × 1 (C3SR17) 50S ribosomal protein L13 × 1 (A0A656YGQ7) 50S ribosomal protein L14 × 1 (C3SQZ2) 50S ribosomal protein L15 × 1 (P02413) 50S ribosomal protein L16 × 1 (A0A0H3EMH6) 50S ribosomal protein L17 × 1 (A0A1X3JBW6) 50S ribosomal protein L18 × 1 (A0A514EKV0) 50S ribosomal protein L19 × 1 (A0A370V6W8) 50S ribosomal protein L20 × 1 (A0A378BCJ4) 50S ribosomal protein L21 × 1 (A0A0E2L2H1) 50S ribosomal protein L22 × 1 (A0A0F6B7N1) 50S ribosomal protein L23 × 1 (D7Y3D8) 50S ribosomal protein L24 × 1 (S1E9P3) 50S ribosomal protein L25 × 1 (P68919) 50S ribosomal protein L27 × 1 (C3SSG7) 50S ribosomal protein L28 × 1 (C3SME2) 50S ribosomal protein L29 × 1 (P0A7M6) 50S ribosomal protein L30 × 1 (C3SR32) 50S ribosomal protein L32 × 1 (A0A657HW13) ZN ZINC ION × 2 A2G 2-acetamido-2-deoxy-alpha-D-galactopyranose × 1 MG MAGNESIUM ION × 216 SPM SPERMINE × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE-PROPANE Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

20 other PDB entries and 20 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name C3SFP2_ECOLX
Isoform
PDB entities 14
Chains and sequence ranges Author chain h; PDBConstruct 1–149; UniProt 1–149

50S ribosomal protein L13

OrganismNot specified

UniProt A0A656YGQ7

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 30 RNA 2 PDB declaration: 32-meric(32) Consistent with all polymer counts Chain i; UniProt 1–142 Not recorded 50S ribosomal protein L33 × 1 (A0A3S5YPG8) 50S ribosomal protein L34 × 1 (A0A8X6EVB8) 50S ribosomal protein L35 × 1 (A0A8S0FT45) 50S ribosomal protein L36 × 1 (A0A2X1PTA3) 50S ribosomal protein L31 × 1 (C3SIV2) Drosocin1 × 1 (B4MNS1) 23S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (A0A7L6YWH1) 50S ribosomal protein L3 × 1 (C3SQU2) 50S ribosomal protein L4 × 1 (D8A1N0) 50S ribosomal protein L5 × 1 (D6IEK6) 50S ribosomal protein L6 × 1 (C3SR17) 50S ribosomal protein L9 × 1 (C3SFP2) 50S ribosomal protein L14 × 1 (C3SQZ2) 50S ribosomal protein L15 × 1 (P02413) 50S ribosomal protein L16 × 1 (A0A0H3EMH6) 50S ribosomal protein L17 × 1 (A0A1X3JBW6) 50S ribosomal protein L18 × 1 (A0A514EKV0) 50S ribosomal protein L19 × 1 (A0A370V6W8) 50S ribosomal protein L20 × 1 (A0A378BCJ4) 50S ribosomal protein L21 × 1 (A0A0E2L2H1) 50S ribosomal protein L22 × 1 (A0A0F6B7N1) 50S ribosomal protein L23 × 1 (D7Y3D8) 50S ribosomal protein L24 × 1 (S1E9P3) 50S ribosomal protein L25 × 1 (P68919) 50S ribosomal protein L27 × 1 (C3SSG7) 50S ribosomal protein L28 × 1 (C3SME2) 50S ribosomal protein L29 × 1 (P0A7M6) 50S ribosomal protein L30 × 1 (C3SR32) 50S ribosomal protein L32 × 1 (A0A657HW13) ZN ZINC ION × 2 A2G 2-acetamido-2-deoxy-alpha-D-galactopyranose × 1 MG MAGNESIUM ION × 216 SPM SPERMINE × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE-PROPANE Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A656YGQ7_SALNE
Isoform
PDB entities 15
Chains and sequence ranges Author chain i; PDBConstruct 1–142; UniProt 1–142

50S ribosomal protein L14

OrganismNot specified

UniProt C3SQZ2

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 30 RNA 2 PDB declaration: 32-meric(32) Consistent with all polymer counts Chain j; UniProt 1–123 Not recorded 50S ribosomal protein L33 × 1 (A0A3S5YPG8) 50S ribosomal protein L34 × 1 (A0A8X6EVB8) 50S ribosomal protein L35 × 1 (A0A8S0FT45) 50S ribosomal protein L36 × 1 (A0A2X1PTA3) 50S ribosomal protein L31 × 1 (C3SIV2) Drosocin1 × 1 (B4MNS1) 23S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (A0A7L6YWH1) 50S ribosomal protein L3 × 1 (C3SQU2) 50S ribosomal protein L4 × 1 (D8A1N0) 50S ribosomal protein L5 × 1 (D6IEK6) 50S ribosomal protein L6 × 1 (C3SR17) 50S ribosomal protein L9 × 1 (C3SFP2) 50S ribosomal protein L13 × 1 (A0A656YGQ7) 50S ribosomal protein L15 × 1 (P02413) 50S ribosomal protein L16 × 1 (A0A0H3EMH6) 50S ribosomal protein L17 × 1 (A0A1X3JBW6) 50S ribosomal protein L18 × 1 (A0A514EKV0) 50S ribosomal protein L19 × 1 (A0A370V6W8) 50S ribosomal protein L20 × 1 (A0A378BCJ4) 50S ribosomal protein L21 × 1 (A0A0E2L2H1) 50S ribosomal protein L22 × 1 (A0A0F6B7N1) 50S ribosomal protein L23 × 1 (D7Y3D8) 50S ribosomal protein L24 × 1 (S1E9P3) 50S ribosomal protein L25 × 1 (P68919) 50S ribosomal protein L27 × 1 (C3SSG7) 50S ribosomal protein L28 × 1 (C3SME2) 50S ribosomal protein L29 × 1 (P0A7M6) 50S ribosomal protein L30 × 1 (C3SR32) 50S ribosomal protein L32 × 1 (A0A657HW13) ZN ZINC ION × 2 A2G 2-acetamido-2-deoxy-alpha-D-galactopyranose × 1 MG MAGNESIUM ION × 216 SPM SPERMINE × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE-PROPANE Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

10 other PDB entries and 10 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name C3SQZ2_ECOLX
Isoform
PDB entities 16
Chains and sequence ranges Author chain j; PDBConstruct 1–123; UniProt 1–123

50S ribosomal protein L15

OrganismNot specified

UniProt P02413

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 30 RNA 2 PDB declaration: 32-meric(32) Consistent with all polymer counts Chain k; UniProt 1–144 Not recorded 50S ribosomal protein L33 × 1 (A0A3S5YPG8) 50S ribosomal protein L34 × 1 (A0A8X6EVB8) 50S ribosomal protein L35 × 1 (A0A8S0FT45) 50S ribosomal protein L36 × 1 (A0A2X1PTA3) 50S ribosomal protein L31 × 1 (C3SIV2) Drosocin1 × 1 (B4MNS1) 23S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (A0A7L6YWH1) 50S ribosomal protein L3 × 1 (C3SQU2) 50S ribosomal protein L4 × 1 (D8A1N0) 50S ribosomal protein L5 × 1 (D6IEK6) 50S ribosomal protein L6 × 1 (C3SR17) 50S ribosomal protein L9 × 1 (C3SFP2) 50S ribosomal protein L13 × 1 (A0A656YGQ7) 50S ribosomal protein L14 × 1 (C3SQZ2) 50S ribosomal protein L16 × 1 (A0A0H3EMH6) 50S ribosomal protein L17 × 1 (A0A1X3JBW6) 50S ribosomal protein L18 × 1 (A0A514EKV0) 50S ribosomal protein L19 × 1 (A0A370V6W8) 50S ribosomal protein L20 × 1 (A0A378BCJ4) 50S ribosomal protein L21 × 1 (A0A0E2L2H1) 50S ribosomal protein L22 × 1 (A0A0F6B7N1) 50S ribosomal protein L23 × 1 (D7Y3D8) 50S ribosomal protein L24 × 1 (S1E9P3) 50S ribosomal protein L25 × 1 (P68919) 50S ribosomal protein L27 × 1 (C3SSG7) 50S ribosomal protein L28 × 1 (C3SME2) 50S ribosomal protein L29 × 1 (P0A7M6) 50S ribosomal protein L30 × 1 (C3SR32) 50S ribosomal protein L32 × 1 (A0A657HW13) ZN ZINC ION × 2 A2G 2-acetamido-2-deoxy-alpha-D-galactopyranose × 1 MG MAGNESIUM ION × 216 SPM SPERMINE × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE-PROPANE Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

522 other PDB entries and 568 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL15_ECOLI
Isoform
PDB entities 17
Chains and sequence ranges Author chain k; PDBConstruct 1–144; UniProt 1–144

50S ribosomal protein L16

OrganismNot specified

UniProt A0A0H3EMH6

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 30 RNA 2 PDB declaration: 32-meric(32) Consistent with all polymer counts Chain l; UniProt 1–136 Not recorded 50S ribosomal protein L33 × 1 (A0A3S5YPG8) 50S ribosomal protein L34 × 1 (A0A8X6EVB8) 50S ribosomal protein L35 × 1 (A0A8S0FT45) 50S ribosomal protein L36 × 1 (A0A2X1PTA3) 50S ribosomal protein L31 × 1 (C3SIV2) Drosocin1 × 1 (B4MNS1) 23S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (A0A7L6YWH1) 50S ribosomal protein L3 × 1 (C3SQU2) 50S ribosomal protein L4 × 1 (D8A1N0) 50S ribosomal protein L5 × 1 (D6IEK6) 50S ribosomal protein L6 × 1 (C3SR17) 50S ribosomal protein L9 × 1 (C3SFP2) 50S ribosomal protein L13 × 1 (A0A656YGQ7) 50S ribosomal protein L14 × 1 (C3SQZ2) 50S ribosomal protein L15 × 1 (P02413) 50S ribosomal protein L17 × 1 (A0A1X3JBW6) 50S ribosomal protein L18 × 1 (A0A514EKV0) 50S ribosomal protein L19 × 1 (A0A370V6W8) 50S ribosomal protein L20 × 1 (A0A378BCJ4) 50S ribosomal protein L21 × 1 (A0A0E2L2H1) 50S ribosomal protein L22 × 1 (A0A0F6B7N1) 50S ribosomal protein L23 × 1 (D7Y3D8) 50S ribosomal protein L24 × 1 (S1E9P3) 50S ribosomal protein L25 × 1 (P68919) 50S ribosomal protein L27 × 1 (C3SSG7) 50S ribosomal protein L28 × 1 (C3SME2) 50S ribosomal protein L29 × 1 (P0A7M6) 50S ribosomal protein L30 × 1 (C3SR32) 50S ribosomal protein L32 × 1 (A0A657HW13) ZN ZINC ION × 2 A2G 2-acetamido-2-deoxy-alpha-D-galactopyranose × 1 MG MAGNESIUM ION × 216 SPM SPERMINE × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE-PROPANE Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

4 other PDB entries and 4 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A0H3EMH6_ECO8N
Isoform
PDB entities 18
Chains and sequence ranges Author chain l; PDBConstruct 1–136; UniProt 1–136

50S ribosomal protein L17

OrganismNot specified

UniProt A0A1X3JBW6

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 30 RNA 2 PDB declaration: 32-meric(32) Consistent with all polymer counts Chain m; UniProt 1–127 Not recorded 50S ribosomal protein L33 × 1 (A0A3S5YPG8) 50S ribosomal protein L34 × 1 (A0A8X6EVB8) 50S ribosomal protein L35 × 1 (A0A8S0FT45) 50S ribosomal protein L36 × 1 (A0A2X1PTA3) 50S ribosomal protein L31 × 1 (C3SIV2) Drosocin1 × 1 (B4MNS1) 23S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (A0A7L6YWH1) 50S ribosomal protein L3 × 1 (C3SQU2) 50S ribosomal protein L4 × 1 (D8A1N0) 50S ribosomal protein L5 × 1 (D6IEK6) 50S ribosomal protein L6 × 1 (C3SR17) 50S ribosomal protein L9 × 1 (C3SFP2) 50S ribosomal protein L13 × 1 (A0A656YGQ7) 50S ribosomal protein L14 × 1 (C3SQZ2) 50S ribosomal protein L15 × 1 (P02413) 50S ribosomal protein L16 × 1 (A0A0H3EMH6) 50S ribosomal protein L18 × 1 (A0A514EKV0) 50S ribosomal protein L19 × 1 (A0A370V6W8) 50S ribosomal protein L20 × 1 (A0A378BCJ4) 50S ribosomal protein L21 × 1 (A0A0E2L2H1) 50S ribosomal protein L22 × 1 (A0A0F6B7N1) 50S ribosomal protein L23 × 1 (D7Y3D8) 50S ribosomal protein L24 × 1 (S1E9P3) 50S ribosomal protein L25 × 1 (P68919) 50S ribosomal protein L27 × 1 (C3SSG7) 50S ribosomal protein L28 × 1 (C3SME2) 50S ribosomal protein L29 × 1 (P0A7M6) 50S ribosomal protein L30 × 1 (C3SR32) 50S ribosomal protein L32 × 1 (A0A657HW13) ZN ZINC ION × 2 A2G 2-acetamido-2-deoxy-alpha-D-galactopyranose × 1 MG MAGNESIUM ION × 216 SPM SPERMINE × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE-PROPANE Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A1X3JBW6_ECOLX
Isoform
PDB entities 19
Chains and sequence ranges Author chain m; PDBConstruct 1–127; UniProt 1–127

50S ribosomal protein L18

OrganismNot specified

UniProt A0A514EKV0

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 30 RNA 2 PDB declaration: 32-meric(32) Consistent with all polymer counts Chain n; UniProt 1–117 Not recorded 50S ribosomal protein L33 × 1 (A0A3S5YPG8) 50S ribosomal protein L34 × 1 (A0A8X6EVB8) 50S ribosomal protein L35 × 1 (A0A8S0FT45) 50S ribosomal protein L36 × 1 (A0A2X1PTA3) 50S ribosomal protein L31 × 1 (C3SIV2) Drosocin1 × 1 (B4MNS1) 23S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (A0A7L6YWH1) 50S ribosomal protein L3 × 1 (C3SQU2) 50S ribosomal protein L4 × 1 (D8A1N0) 50S ribosomal protein L5 × 1 (D6IEK6) 50S ribosomal protein L6 × 1 (C3SR17) 50S ribosomal protein L9 × 1 (C3SFP2) 50S ribosomal protein L13 × 1 (A0A656YGQ7) 50S ribosomal protein L14 × 1 (C3SQZ2) 50S ribosomal protein L15 × 1 (P02413) 50S ribosomal protein L16 × 1 (A0A0H3EMH6) 50S ribosomal protein L17 × 1 (A0A1X3JBW6) 50S ribosomal protein L19 × 1 (A0A370V6W8) 50S ribosomal protein L20 × 1 (A0A378BCJ4) 50S ribosomal protein L21 × 1 (A0A0E2L2H1) 50S ribosomal protein L22 × 1 (A0A0F6B7N1) 50S ribosomal protein L23 × 1 (D7Y3D8) 50S ribosomal protein L24 × 1 (S1E9P3) 50S ribosomal protein L25 × 1 (P68919) 50S ribosomal protein L27 × 1 (C3SSG7) 50S ribosomal protein L28 × 1 (C3SME2) 50S ribosomal protein L29 × 1 (P0A7M6) 50S ribosomal protein L30 × 1 (C3SR32) 50S ribosomal protein L32 × 1 (A0A657HW13) ZN ZINC ION × 2 A2G 2-acetamido-2-deoxy-alpha-D-galactopyranose × 1 MG MAGNESIUM ION × 216 SPM SPERMINE × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE-PROPANE Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A514EKV0_9ENTR
Isoform
PDB entities 20
Chains and sequence ranges Author chain n; PDBConstruct 1–117; UniProt 1–117

50S ribosomal protein L19

OrganismNot specified

UniProt A0A370V6W8

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 30 RNA 2 PDB declaration: 32-meric(32) Consistent with all polymer counts Chain o; UniProt 1–115 Not recorded 50S ribosomal protein L33 × 1 (A0A3S5YPG8) 50S ribosomal protein L34 × 1 (A0A8X6EVB8) 50S ribosomal protein L35 × 1 (A0A8S0FT45) 50S ribosomal protein L36 × 1 (A0A2X1PTA3) 50S ribosomal protein L31 × 1 (C3SIV2) Drosocin1 × 1 (B4MNS1) 23S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (A0A7L6YWH1) 50S ribosomal protein L3 × 1 (C3SQU2) 50S ribosomal protein L4 × 1 (D8A1N0) 50S ribosomal protein L5 × 1 (D6IEK6) 50S ribosomal protein L6 × 1 (C3SR17) 50S ribosomal protein L9 × 1 (C3SFP2) 50S ribosomal protein L13 × 1 (A0A656YGQ7) 50S ribosomal protein L14 × 1 (C3SQZ2) 50S ribosomal protein L15 × 1 (P02413) 50S ribosomal protein L16 × 1 (A0A0H3EMH6) 50S ribosomal protein L17 × 1 (A0A1X3JBW6) 50S ribosomal protein L18 × 1 (A0A514EKV0) 50S ribosomal protein L20 × 1 (A0A378BCJ4) 50S ribosomal protein L21 × 1 (A0A0E2L2H1) 50S ribosomal protein L22 × 1 (A0A0F6B7N1) 50S ribosomal protein L23 × 1 (D7Y3D8) 50S ribosomal protein L24 × 1 (S1E9P3) 50S ribosomal protein L25 × 1 (P68919) 50S ribosomal protein L27 × 1 (C3SSG7) 50S ribosomal protein L28 × 1 (C3SME2) 50S ribosomal protein L29 × 1 (P0A7M6) 50S ribosomal protein L30 × 1 (C3SR32) 50S ribosomal protein L32 × 1 (A0A657HW13) ZN ZINC ION × 2 A2G 2-acetamido-2-deoxy-alpha-D-galactopyranose × 1 MG MAGNESIUM ION × 216 SPM SPERMINE × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE-PROPANE Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A370V6W8_9ESCH
Isoform
PDB entities 21
Chains and sequence ranges Author chain o; PDBConstruct 1–115; UniProt 1–115

50S ribosomal protein L20

OrganismNot specified

UniProt A0A378BCJ4

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 30 RNA 2 PDB declaration: 32-meric(32) Consistent with all polymer counts Chain p; UniProt 1–118 Not recorded 50S ribosomal protein L33 × 1 (A0A3S5YPG8) 50S ribosomal protein L34 × 1 (A0A8X6EVB8) 50S ribosomal protein L35 × 1 (A0A8S0FT45) 50S ribosomal protein L36 × 1 (A0A2X1PTA3) 50S ribosomal protein L31 × 1 (C3SIV2) Drosocin1 × 1 (B4MNS1) 23S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (A0A7L6YWH1) 50S ribosomal protein L3 × 1 (C3SQU2) 50S ribosomal protein L4 × 1 (D8A1N0) 50S ribosomal protein L5 × 1 (D6IEK6) 50S ribosomal protein L6 × 1 (C3SR17) 50S ribosomal protein L9 × 1 (C3SFP2) 50S ribosomal protein L13 × 1 (A0A656YGQ7) 50S ribosomal protein L14 × 1 (C3SQZ2) 50S ribosomal protein L15 × 1 (P02413) 50S ribosomal protein L16 × 1 (A0A0H3EMH6) 50S ribosomal protein L17 × 1 (A0A1X3JBW6) 50S ribosomal protein L18 × 1 (A0A514EKV0) 50S ribosomal protein L19 × 1 (A0A370V6W8) 50S ribosomal protein L21 × 1 (A0A0E2L2H1) 50S ribosomal protein L22 × 1 (A0A0F6B7N1) 50S ribosomal protein L23 × 1 (D7Y3D8) 50S ribosomal protein L24 × 1 (S1E9P3) 50S ribosomal protein L25 × 1 (P68919) 50S ribosomal protein L27 × 1 (C3SSG7) 50S ribosomal protein L28 × 1 (C3SME2) 50S ribosomal protein L29 × 1 (P0A7M6) 50S ribosomal protein L30 × 1 (C3SR32) 50S ribosomal protein L32 × 1 (A0A657HW13) ZN ZINC ION × 2 A2G 2-acetamido-2-deoxy-alpha-D-galactopyranose × 1 MG MAGNESIUM ION × 216 SPM SPERMINE × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE-PROPANE Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A378BCJ4_KLEPO
Isoform
PDB entities 22
Chains and sequence ranges Author chain p; PDBConstruct 1–118; UniProt 1–118

50S ribosomal protein L21

OrganismNot specified

UniProt A0A0E2L2H1

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 30 RNA 2 PDB declaration: 32-meric(32) Consistent with all polymer counts Chain q; UniProt 1–103 Not recorded 50S ribosomal protein L33 × 1 (A0A3S5YPG8) 50S ribosomal protein L34 × 1 (A0A8X6EVB8) 50S ribosomal protein L35 × 1 (A0A8S0FT45) 50S ribosomal protein L36 × 1 (A0A2X1PTA3) 50S ribosomal protein L31 × 1 (C3SIV2) Drosocin1 × 1 (B4MNS1) 23S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (A0A7L6YWH1) 50S ribosomal protein L3 × 1 (C3SQU2) 50S ribosomal protein L4 × 1 (D8A1N0) 50S ribosomal protein L5 × 1 (D6IEK6) 50S ribosomal protein L6 × 1 (C3SR17) 50S ribosomal protein L9 × 1 (C3SFP2) 50S ribosomal protein L13 × 1 (A0A656YGQ7) 50S ribosomal protein L14 × 1 (C3SQZ2) 50S ribosomal protein L15 × 1 (P02413) 50S ribosomal protein L16 × 1 (A0A0H3EMH6) 50S ribosomal protein L17 × 1 (A0A1X3JBW6) 50S ribosomal protein L18 × 1 (A0A514EKV0) 50S ribosomal protein L19 × 1 (A0A370V6W8) 50S ribosomal protein L20 × 1 (A0A378BCJ4) 50S ribosomal protein L22 × 1 (A0A0F6B7N1) 50S ribosomal protein L23 × 1 (D7Y3D8) 50S ribosomal protein L24 × 1 (S1E9P3) 50S ribosomal protein L25 × 1 (P68919) 50S ribosomal protein L27 × 1 (C3SSG7) 50S ribosomal protein L28 × 1 (C3SME2) 50S ribosomal protein L29 × 1 (P0A7M6) 50S ribosomal protein L30 × 1 (C3SR32) 50S ribosomal protein L32 × 1 (A0A657HW13) ZN ZINC ION × 2 A2G 2-acetamido-2-deoxy-alpha-D-galactopyranose × 1 MG MAGNESIUM ION × 216 SPM SPERMINE × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE-PROPANE Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A0E2L2H1_ECOU3
Isoform
PDB entities 23
Chains and sequence ranges Author chain q; PDBConstruct 1–103; UniProt 1–103

50S ribosomal protein L22

OrganismNot specified

UniProt A0A0F6B7N1

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 30 RNA 2 PDB declaration: 32-meric(32) Consistent with all polymer counts Chain r; UniProt 1–110 Not recorded 50S ribosomal protein L33 × 1 (A0A3S5YPG8) 50S ribosomal protein L34 × 1 (A0A8X6EVB8) 50S ribosomal protein L35 × 1 (A0A8S0FT45) 50S ribosomal protein L36 × 1 (A0A2X1PTA3) 50S ribosomal protein L31 × 1 (C3SIV2) Drosocin1 × 1 (B4MNS1) 23S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (A0A7L6YWH1) 50S ribosomal protein L3 × 1 (C3SQU2) 50S ribosomal protein L4 × 1 (D8A1N0) 50S ribosomal protein L5 × 1 (D6IEK6) 50S ribosomal protein L6 × 1 (C3SR17) 50S ribosomal protein L9 × 1 (C3SFP2) 50S ribosomal protein L13 × 1 (A0A656YGQ7) 50S ribosomal protein L14 × 1 (C3SQZ2) 50S ribosomal protein L15 × 1 (P02413) 50S ribosomal protein L16 × 1 (A0A0H3EMH6) 50S ribosomal protein L17 × 1 (A0A1X3JBW6) 50S ribosomal protein L18 × 1 (A0A514EKV0) 50S ribosomal protein L19 × 1 (A0A370V6W8) 50S ribosomal protein L20 × 1 (A0A378BCJ4) 50S ribosomal protein L21 × 1 (A0A0E2L2H1) 50S ribosomal protein L23 × 1 (D7Y3D8) 50S ribosomal protein L24 × 1 (S1E9P3) 50S ribosomal protein L25 × 1 (P68919) 50S ribosomal protein L27 × 1 (C3SSG7) 50S ribosomal protein L28 × 1 (C3SME2) 50S ribosomal protein L29 × 1 (P0A7M6) 50S ribosomal protein L30 × 1 (C3SR32) 50S ribosomal protein L32 × 1 (A0A657HW13) ZN ZINC ION × 2 A2G 2-acetamido-2-deoxy-alpha-D-galactopyranose × 1 MG MAGNESIUM ION × 216 SPM SPERMINE × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE-PROPANE Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A0F6B7N1_SALT1
Isoform
PDB entities 24
Chains and sequence ranges Author chain r; PDBConstruct 1–110; UniProt 1–110

50S ribosomal protein L23

OrganismNot specified

UniProt D7Y3D8

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 30 RNA 2 PDB declaration: 32-meric(32) Consistent with all polymer counts Chain s; UniProt 1–100 Not recorded 50S ribosomal protein L33 × 1 (A0A3S5YPG8) 50S ribosomal protein L34 × 1 (A0A8X6EVB8) 50S ribosomal protein L35 × 1 (A0A8S0FT45) 50S ribosomal protein L36 × 1 (A0A2X1PTA3) 50S ribosomal protein L31 × 1 (C3SIV2) Drosocin1 × 1 (B4MNS1) 23S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (A0A7L6YWH1) 50S ribosomal protein L3 × 1 (C3SQU2) 50S ribosomal protein L4 × 1 (D8A1N0) 50S ribosomal protein L5 × 1 (D6IEK6) 50S ribosomal protein L6 × 1 (C3SR17) 50S ribosomal protein L9 × 1 (C3SFP2) 50S ribosomal protein L13 × 1 (A0A656YGQ7) 50S ribosomal protein L14 × 1 (C3SQZ2) 50S ribosomal protein L15 × 1 (P02413) 50S ribosomal protein L16 × 1 (A0A0H3EMH6) 50S ribosomal protein L17 × 1 (A0A1X3JBW6) 50S ribosomal protein L18 × 1 (A0A514EKV0) 50S ribosomal protein L19 × 1 (A0A370V6W8) 50S ribosomal protein L20 × 1 (A0A378BCJ4) 50S ribosomal protein L21 × 1 (A0A0E2L2H1) 50S ribosomal protein L22 × 1 (A0A0F6B7N1) 50S ribosomal protein L24 × 1 (S1E9P3) 50S ribosomal protein L25 × 1 (P68919) 50S ribosomal protein L27 × 1 (C3SSG7) 50S ribosomal protein L28 × 1 (C3SME2) 50S ribosomal protein L29 × 1 (P0A7M6) 50S ribosomal protein L30 × 1 (C3SR32) 50S ribosomal protein L32 × 1 (A0A657HW13) ZN ZINC ION × 2 A2G 2-acetamido-2-deoxy-alpha-D-galactopyranose × 1 MG MAGNESIUM ION × 216 SPM SPERMINE × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE-PROPANE Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name D7Y3D8_ECOM1
Isoform
PDB entities 25
Chains and sequence ranges Author chain s; PDBConstruct 1–100; UniProt 1–100

50S ribosomal protein L24

OrganismNot specified

UniProt S1E9P3

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 30 RNA 2 PDB declaration: 32-meric(32) Consistent with all polymer counts Chain t; UniProt 1–104 Not recorded 50S ribosomal protein L33 × 1 (A0A3S5YPG8) 50S ribosomal protein L34 × 1 (A0A8X6EVB8) 50S ribosomal protein L35 × 1 (A0A8S0FT45) 50S ribosomal protein L36 × 1 (A0A2X1PTA3) 50S ribosomal protein L31 × 1 (C3SIV2) Drosocin1 × 1 (B4MNS1) 23S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (A0A7L6YWH1) 50S ribosomal protein L3 × 1 (C3SQU2) 50S ribosomal protein L4 × 1 (D8A1N0) 50S ribosomal protein L5 × 1 (D6IEK6) 50S ribosomal protein L6 × 1 (C3SR17) 50S ribosomal protein L9 × 1 (C3SFP2) 50S ribosomal protein L13 × 1 (A0A656YGQ7) 50S ribosomal protein L14 × 1 (C3SQZ2) 50S ribosomal protein L15 × 1 (P02413) 50S ribosomal protein L16 × 1 (A0A0H3EMH6) 50S ribosomal protein L17 × 1 (A0A1X3JBW6) 50S ribosomal protein L18 × 1 (A0A514EKV0) 50S ribosomal protein L19 × 1 (A0A370V6W8) 50S ribosomal protein L20 × 1 (A0A378BCJ4) 50S ribosomal protein L21 × 1 (A0A0E2L2H1) 50S ribosomal protein L22 × 1 (A0A0F6B7N1) 50S ribosomal protein L23 × 1 (D7Y3D8) 50S ribosomal protein L25 × 1 (P68919) 50S ribosomal protein L27 × 1 (C3SSG7) 50S ribosomal protein L28 × 1 (C3SME2) 50S ribosomal protein L29 × 1 (P0A7M6) 50S ribosomal protein L30 × 1 (C3SR32) 50S ribosomal protein L32 × 1 (A0A657HW13) ZN ZINC ION × 2 A2G 2-acetamido-2-deoxy-alpha-D-galactopyranose × 1 MG MAGNESIUM ION × 216 SPM SPERMINE × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE-PROPANE Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

8 other PDB entries and 8 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name S1E9P3_ECOLX
Isoform
PDB entities 26
Chains and sequence ranges Author chain t; PDBConstruct 1–104; UniProt 1–104

50S ribosomal protein L25

OrganismNot specified

UniProt P68919

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 30 RNA 2 PDB declaration: 32-meric(32) Consistent with all polymer counts Chain u; UniProt 1–94 Not recorded 50S ribosomal protein L33 × 1 (A0A3S5YPG8) 50S ribosomal protein L34 × 1 (A0A8X6EVB8) 50S ribosomal protein L35 × 1 (A0A8S0FT45) 50S ribosomal protein L36 × 1 (A0A2X1PTA3) 50S ribosomal protein L31 × 1 (C3SIV2) Drosocin1 × 1 (B4MNS1) 23S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (A0A7L6YWH1) 50S ribosomal protein L3 × 1 (C3SQU2) 50S ribosomal protein L4 × 1 (D8A1N0) 50S ribosomal protein L5 × 1 (D6IEK6) 50S ribosomal protein L6 × 1 (C3SR17) 50S ribosomal protein L9 × 1 (C3SFP2) 50S ribosomal protein L13 × 1 (A0A656YGQ7) 50S ribosomal protein L14 × 1 (C3SQZ2) 50S ribosomal protein L15 × 1 (P02413) 50S ribosomal protein L16 × 1 (A0A0H3EMH6) 50S ribosomal protein L17 × 1 (A0A1X3JBW6) 50S ribosomal protein L18 × 1 (A0A514EKV0) 50S ribosomal protein L19 × 1 (A0A370V6W8) 50S ribosomal protein L20 × 1 (A0A378BCJ4) 50S ribosomal protein L21 × 1 (A0A0E2L2H1) 50S ribosomal protein L22 × 1 (A0A0F6B7N1) 50S ribosomal protein L23 × 1 (D7Y3D8) 50S ribosomal protein L24 × 1 (S1E9P3) 50S ribosomal protein L27 × 1 (C3SSG7) 50S ribosomal protein L28 × 1 (C3SME2) 50S ribosomal protein L29 × 1 (P0A7M6) 50S ribosomal protein L30 × 1 (C3SR32) 50S ribosomal protein L32 × 1 (A0A657HW13) ZN ZINC ION × 2 A2G 2-acetamido-2-deoxy-alpha-D-galactopyranose × 1 MG MAGNESIUM ION × 216 SPM SPERMINE × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE-PROPANE Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

478 other PDB entries and 523 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL25_ECOLI
Isoform
PDB entities 27
Chains and sequence ranges Author chain u; PDBConstruct 1–94; UniProt 1–94

50S ribosomal protein L27

OrganismNot specified

UniProt C3SSG7

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 30 RNA 2 PDB declaration: 32-meric(32) Consistent with all polymer counts Chain v; UniProt 1–85 Not recorded 50S ribosomal protein L33 × 1 (A0A3S5YPG8) 50S ribosomal protein L34 × 1 (A0A8X6EVB8) 50S ribosomal protein L35 × 1 (A0A8S0FT45) 50S ribosomal protein L36 × 1 (A0A2X1PTA3) 50S ribosomal protein L31 × 1 (C3SIV2) Drosocin1 × 1 (B4MNS1) 23S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (A0A7L6YWH1) 50S ribosomal protein L3 × 1 (C3SQU2) 50S ribosomal protein L4 × 1 (D8A1N0) 50S ribosomal protein L5 × 1 (D6IEK6) 50S ribosomal protein L6 × 1 (C3SR17) 50S ribosomal protein L9 × 1 (C3SFP2) 50S ribosomal protein L13 × 1 (A0A656YGQ7) 50S ribosomal protein L14 × 1 (C3SQZ2) 50S ribosomal protein L15 × 1 (P02413) 50S ribosomal protein L16 × 1 (A0A0H3EMH6) 50S ribosomal protein L17 × 1 (A0A1X3JBW6) 50S ribosomal protein L18 × 1 (A0A514EKV0) 50S ribosomal protein L19 × 1 (A0A370V6W8) 50S ribosomal protein L20 × 1 (A0A378BCJ4) 50S ribosomal protein L21 × 1 (A0A0E2L2H1) 50S ribosomal protein L22 × 1 (A0A0F6B7N1) 50S ribosomal protein L23 × 1 (D7Y3D8) 50S ribosomal protein L24 × 1 (S1E9P3) 50S ribosomal protein L25 × 1 (P68919) 50S ribosomal protein L28 × 1 (C3SME2) 50S ribosomal protein L29 × 1 (P0A7M6) 50S ribosomal protein L30 × 1 (C3SR32) 50S ribosomal protein L32 × 1 (A0A657HW13) ZN ZINC ION × 2 A2G 2-acetamido-2-deoxy-alpha-D-galactopyranose × 1 MG MAGNESIUM ION × 216 SPM SPERMINE × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE-PROPANE Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

20 other PDB entries and 20 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name C3SSG7_ECOLX
Isoform
PDB entities 28
Chains and sequence ranges Author chain v; PDBConstruct 1–85; UniProt 1–85

50S ribosomal protein L28

OrganismNot specified

UniProt C3SME2

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 30 RNA 2 PDB declaration: 32-meric(32) Consistent with all polymer counts Chain w; UniProt 1–78 Not recorded 50S ribosomal protein L33 × 1 (A0A3S5YPG8) 50S ribosomal protein L34 × 1 (A0A8X6EVB8) 50S ribosomal protein L35 × 1 (A0A8S0FT45) 50S ribosomal protein L36 × 1 (A0A2X1PTA3) 50S ribosomal protein L31 × 1 (C3SIV2) Drosocin1 × 1 (B4MNS1) 23S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (A0A7L6YWH1) 50S ribosomal protein L3 × 1 (C3SQU2) 50S ribosomal protein L4 × 1 (D8A1N0) 50S ribosomal protein L5 × 1 (D6IEK6) 50S ribosomal protein L6 × 1 (C3SR17) 50S ribosomal protein L9 × 1 (C3SFP2) 50S ribosomal protein L13 × 1 (A0A656YGQ7) 50S ribosomal protein L14 × 1 (C3SQZ2) 50S ribosomal protein L15 × 1 (P02413) 50S ribosomal protein L16 × 1 (A0A0H3EMH6) 50S ribosomal protein L17 × 1 (A0A1X3JBW6) 50S ribosomal protein L18 × 1 (A0A514EKV0) 50S ribosomal protein L19 × 1 (A0A370V6W8) 50S ribosomal protein L20 × 1 (A0A378BCJ4) 50S ribosomal protein L21 × 1 (A0A0E2L2H1) 50S ribosomal protein L22 × 1 (A0A0F6B7N1) 50S ribosomal protein L23 × 1 (D7Y3D8) 50S ribosomal protein L24 × 1 (S1E9P3) 50S ribosomal protein L25 × 1 (P68919) 50S ribosomal protein L27 × 1 (C3SSG7) 50S ribosomal protein L29 × 1 (P0A7M6) 50S ribosomal protein L30 × 1 (C3SR32) 50S ribosomal protein L32 × 1 (A0A657HW13) ZN ZINC ION × 2 A2G 2-acetamido-2-deoxy-alpha-D-galactopyranose × 1 MG MAGNESIUM ION × 216 SPM SPERMINE × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE-PROPANE Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

4 other PDB entries and 4 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name C3SME2_ECOLX
Isoform
PDB entities 29
Chains and sequence ranges Author chain w; PDBConstruct 1–78; UniProt 1–78

50S ribosomal protein L29

OrganismNot specified

UniProt P0A7M6

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 30 RNA 2 PDB declaration: 32-meric(32) Consistent with all polymer counts Chain x; UniProt 1–63 Not recorded 50S ribosomal protein L33 × 1 (A0A3S5YPG8) 50S ribosomal protein L34 × 1 (A0A8X6EVB8) 50S ribosomal protein L35 × 1 (A0A8S0FT45) 50S ribosomal protein L36 × 1 (A0A2X1PTA3) 50S ribosomal protein L31 × 1 (C3SIV2) Drosocin1 × 1 (B4MNS1) 23S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (A0A7L6YWH1) 50S ribosomal protein L3 × 1 (C3SQU2) 50S ribosomal protein L4 × 1 (D8A1N0) 50S ribosomal protein L5 × 1 (D6IEK6) 50S ribosomal protein L6 × 1 (C3SR17) 50S ribosomal protein L9 × 1 (C3SFP2) 50S ribosomal protein L13 × 1 (A0A656YGQ7) 50S ribosomal protein L14 × 1 (C3SQZ2) 50S ribosomal protein L15 × 1 (P02413) 50S ribosomal protein L16 × 1 (A0A0H3EMH6) 50S ribosomal protein L17 × 1 (A0A1X3JBW6) 50S ribosomal protein L18 × 1 (A0A514EKV0) 50S ribosomal protein L19 × 1 (A0A370V6W8) 50S ribosomal protein L20 × 1 (A0A378BCJ4) 50S ribosomal protein L21 × 1 (A0A0E2L2H1) 50S ribosomal protein L22 × 1 (A0A0F6B7N1) 50S ribosomal protein L23 × 1 (D7Y3D8) 50S ribosomal protein L24 × 1 (S1E9P3) 50S ribosomal protein L25 × 1 (P68919) 50S ribosomal protein L27 × 1 (C3SSG7) 50S ribosomal protein L28 × 1 (C3SME2) 50S ribosomal protein L30 × 1 (C3SR32) 50S ribosomal protein L32 × 1 (A0A657HW13) ZN ZINC ION × 2 A2G 2-acetamido-2-deoxy-alpha-D-galactopyranose × 1 MG MAGNESIUM ION × 216 SPM SPERMINE × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE-PROPANE Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

457 other PDB entries and 502 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL29_ECOLI
Isoform
PDB entities 30
Chains and sequence ranges Author chain x; PDBConstruct 1–63; UniProt 1–63

50S ribosomal protein L30

OrganismNot specified

UniProt C3SR32

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 30 RNA 2 PDB declaration: 32-meric(32) Consistent with all polymer counts Chain y; UniProt 1–59 Not recorded 50S ribosomal protein L33 × 1 (A0A3S5YPG8) 50S ribosomal protein L34 × 1 (A0A8X6EVB8) 50S ribosomal protein L35 × 1 (A0A8S0FT45) 50S ribosomal protein L36 × 1 (A0A2X1PTA3) 50S ribosomal protein L31 × 1 (C3SIV2) Drosocin1 × 1 (B4MNS1) 23S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (A0A7L6YWH1) 50S ribosomal protein L3 × 1 (C3SQU2) 50S ribosomal protein L4 × 1 (D8A1N0) 50S ribosomal protein L5 × 1 (D6IEK6) 50S ribosomal protein L6 × 1 (C3SR17) 50S ribosomal protein L9 × 1 (C3SFP2) 50S ribosomal protein L13 × 1 (A0A656YGQ7) 50S ribosomal protein L14 × 1 (C3SQZ2) 50S ribosomal protein L15 × 1 (P02413) 50S ribosomal protein L16 × 1 (A0A0H3EMH6) 50S ribosomal protein L17 × 1 (A0A1X3JBW6) 50S ribosomal protein L18 × 1 (A0A514EKV0) 50S ribosomal protein L19 × 1 (A0A370V6W8) 50S ribosomal protein L20 × 1 (A0A378BCJ4) 50S ribosomal protein L21 × 1 (A0A0E2L2H1) 50S ribosomal protein L22 × 1 (A0A0F6B7N1) 50S ribosomal protein L23 × 1 (D7Y3D8) 50S ribosomal protein L24 × 1 (S1E9P3) 50S ribosomal protein L25 × 1 (P68919) 50S ribosomal protein L27 × 1 (C3SSG7) 50S ribosomal protein L28 × 1 (C3SME2) 50S ribosomal protein L29 × 1 (P0A7M6) 50S ribosomal protein L32 × 1 (A0A657HW13) ZN ZINC ION × 2 A2G 2-acetamido-2-deoxy-alpha-D-galactopyranose × 1 MG MAGNESIUM ION × 216 SPM SPERMINE × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE-PROPANE Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

36 other PDB entries and 36 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name C3SR32_ECOLX
Isoform
PDB entities 31
Chains and sequence ranges Author chain y; PDBConstruct 1–59; UniProt 1–59

50S ribosomal protein L32

OrganismNot specified

UniProt A0A657HW13

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 30 RNA 2 PDB declaration: 32-meric(32) Consistent with all polymer counts Chain z; UniProt 1–57 Not recorded 50S ribosomal protein L33 × 1 (A0A3S5YPG8) 50S ribosomal protein L34 × 1 (A0A8X6EVB8) 50S ribosomal protein L35 × 1 (A0A8S0FT45) 50S ribosomal protein L36 × 1 (A0A2X1PTA3) 50S ribosomal protein L31 × 1 (C3SIV2) Drosocin1 × 1 (B4MNS1) 23S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (A0A7L6YWH1) 50S ribosomal protein L3 × 1 (C3SQU2) 50S ribosomal protein L4 × 1 (D8A1N0) 50S ribosomal protein L5 × 1 (D6IEK6) 50S ribosomal protein L6 × 1 (C3SR17) 50S ribosomal protein L9 × 1 (C3SFP2) 50S ribosomal protein L13 × 1 (A0A656YGQ7) 50S ribosomal protein L14 × 1 (C3SQZ2) 50S ribosomal protein L15 × 1 (P02413) 50S ribosomal protein L16 × 1 (A0A0H3EMH6) 50S ribosomal protein L17 × 1 (A0A1X3JBW6) 50S ribosomal protein L18 × 1 (A0A514EKV0) 50S ribosomal protein L19 × 1 (A0A370V6W8) 50S ribosomal protein L20 × 1 (A0A378BCJ4) 50S ribosomal protein L21 × 1 (A0A0E2L2H1) 50S ribosomal protein L22 × 1 (A0A0F6B7N1) 50S ribosomal protein L23 × 1 (D7Y3D8) 50S ribosomal protein L24 × 1 (S1E9P3) 50S ribosomal protein L25 × 1 (P68919) 50S ribosomal protein L27 × 1 (C3SSG7) 50S ribosomal protein L28 × 1 (C3SME2) 50S ribosomal protein L29 × 1 (P0A7M6) 50S ribosomal protein L30 × 1 (C3SR32) ZN ZINC ION × 2 A2G 2-acetamido-2-deoxy-alpha-D-galactopyranose × 1 MG MAGNESIUM ION × 216 SPM SPERMINE × 1 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE-PROPANE Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A657HW13_SALET
Isoform
PDB entities 32
Chains and sequence ranges Author chain z; PDBConstruct 1–57; UniProt 1–57

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 8ana

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 8ana
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2. Structure Basics 2. Structure Basics

Entry ID entry_id8ana
Deposition date deposition_date2022-08-05
Structure title titleCryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit
Keywords keywordsE.coli, Drosocin, Dro1, antimicrobial peptide, proline-rich, PrAMP, 50S, RIBOSOME; RIBOSOME
Experimental Method methodELECTRON MICROSCOPY

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier67.60
Radius of gyration Rg (electron density) rg_electron68.53
Forward intensity I(0) i055589400000.00
Molecular weight molecular_weight1288400.0 kDa
Excluded volume excluded_volume1315000 ų
Envelope volume envelope_volume2153000 ų
Hydration-shell volume shell_volume238990 ų
Envelope diameter envelope_diameter234.8
Shell Rg shell_rg81.27
Envelope Rg envelope_rg68.69
Shape Rg shape_rg68.59
Total Rg total_rg68.52
Total atoms total_atoms86419
Residues n_residues6028
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax226.5
Rg (real space) rg_real67.42
Rg uncertainty (real space) rg_real_error2.02
I(0) (real space) i0_real5.5590e+10
I(0) uncertainty (real space) i0_real_error1.1360e+09
Rg (reciprocal space) rg_reciprocal68.14
I(0) (reciprocal space) i0_reciprocal55660000000.0000
Solution quality estimate total_estimate0.8564
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary88.7
Skewness Skewness skewness0.239
Kurtosis Kurtosis kurtosis-0.359
Angular range angular_range— – 0.1150 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha8777000000.0000
Real-space data points n_real_points24
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.803; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.966; Smooth: 0.753

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (37)

7. Fold Classification (SCOP + CATH) 4 domains

CATH v4.4 (4 domains)

Domain ID domain_id8anag01
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology930 — Outer Surface Protein A; domain 3
Homologous superfamily homologous superfamily12 — Ribosomal protein L6
Domain ID domain_id8anag02
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology930 — Outer Surface Protein A; domain 3
Homologous superfamily homologous superfamily12 — Ribosomal protein L6
Domain ID domain_id8anak01
Class class3 — Alpha Beta
Architecture architecture100 — Ribosomal Protein L15; Chain: K; domain 2
Topology topology10 — Ribosomal Protein L15; Chain: K; domain 2
Homologous superfamily homologous superfamily10
Domain ID domain_id8anar01
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology470 — Ribosomal Protein L22; Chain A
Homologous superfamily homologous superfamily10 — Ribosomal protein L22/L17

8. Citations (1)

9. Files and Curves (10)