9fq0

Human NatA-NAC-MAP1 80S ribosome complex

Method: ELECTRON MICROSCOPY
▼

1. Protein Identity and Related Structures Protein Identity & Related Structures

Methionine aminopeptidase 1

Homo sapiens

UniProt P53582

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 14 RNA 2 5.8S rRNA × 1 Transcription factor BTF3 × 1 (P20290) 28S rRNA × 1 Large ribosomal subunit protein uL24 × 1 (Q6IBH6) 60S ribosomal protein L35 × 1 (P42766) 60S ribosomal protein L23a × 1 (P62750) Nascent polypeptide-associated complex subunit alpha × 1 (Q13765) 60S ribosomal protein L22 × 1 (P35268) 60S ribosomal protein L19 × 1 (P84098) 60S ribosomal protein L38 × 1 (P63173) N-alpha-acetyltransferase 10 × 1 (P41227) N-alpha-acetyltransferase 15, NatA auxiliary subunit × 1 (Q9BXJ9) 60S ribosomal protein L4 × 1 (P36578) Large ribosomal subunit protein eL6 × 1 (Q02878) 60S ribosomal protein L28 × 1 (P46779) INOSITOL HEXAKISPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name MAP11_HUMAN
Isoform —
PDB entities 2
Chains and sequence ranges Author chain E; PDBConstruct 7–392; UniProt 1–386

Transcription factor BTF3

Homo sapiens

UniProt P20290

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 14 RNA 2 5.8S rRNA × 1 Methionine aminopeptidase 1 × 1 (P53582) 28S rRNA × 1 Large ribosomal subunit protein uL24 × 1 (Q6IBH6) 60S ribosomal protein L35 × 1 (P42766) 60S ribosomal protein L23a × 1 (P62750) Nascent polypeptide-associated complex subunit alpha × 1 (Q13765) 60S ribosomal protein L22 × 1 (P35268) 60S ribosomal protein L19 × 1 (P84098) 60S ribosomal protein L38 × 1 (P63173) N-alpha-acetyltransferase 10 × 1 (P41227) N-alpha-acetyltransferase 15, NatA auxiliary subunit × 1 (Q9BXJ9) 60S ribosomal protein L4 × 1 (P36578) Large ribosomal subunit protein eL6 × 1 (Q02878) 60S ribosomal protein L28 × 1 (P46779) INOSITOL HEXAKISPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name BTF3_HUMAN
Isoform —
PDB entities 3
Chains and sequence ranges Author chain D; PDBConstruct 1–206; UniProt 1–206

Large ribosomal subunit protein uL24

OrganismNot specified

UniProt Q6IBH6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 14 RNA 2 5.8S rRNA × 1 Methionine aminopeptidase 1 × 1 (P53582) Transcription factor BTF3 × 1 (P20290) 28S rRNA × 1 60S ribosomal protein L35 × 1 (P42766) 60S ribosomal protein L23a × 1 (P62750) Nascent polypeptide-associated complex subunit alpha × 1 (Q13765) 60S ribosomal protein L22 × 1 (P35268) 60S ribosomal protein L19 × 1 (P84098) 60S ribosomal protein L38 × 1 (P63173) N-alpha-acetyltransferase 10 × 1 (P41227) N-alpha-acetyltransferase 15, NatA auxiliary subunit × 1 (Q9BXJ9) 60S ribosomal protein L4 × 1 (P36578) Large ribosomal subunit protein eL6 × 1 (Q02878) 60S ribosomal protein L28 × 1 (P46779) INOSITOL HEXAKISPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q6IBH6_HUMAN
Isoform —
PDB entities 5
Chains and sequence ranges Author chain LY; PDBConstruct 1–145; UniProt 1–145

60S ribosomal protein L35

OrganismNot specified

UniProt P42766

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 14 RNA 2 5.8S rRNA × 1 Methionine aminopeptidase 1 × 1 (P53582) Transcription factor BTF3 × 1 (P20290) 28S rRNA × 1 Large ribosomal subunit protein uL24 × 1 (Q6IBH6) 60S ribosomal protein L23a × 1 (P62750) Nascent polypeptide-associated complex subunit alpha × 1 (Q13765) 60S ribosomal protein L22 × 1 (P35268) 60S ribosomal protein L19 × 1 (P84098) 60S ribosomal protein L38 × 1 (P63173) N-alpha-acetyltransferase 10 × 1 (P41227) N-alpha-acetyltransferase 15, NatA auxiliary subunit × 1 (Q9BXJ9) 60S ribosomal protein L4 × 1 (P36578) Large ribosomal subunit protein eL6 × 1 (Q02878) 60S ribosomal protein L28 × 1 (P46779) INOSITOL HEXAKISPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL35_HUMAN
Isoform —
PDB entities 6
Chains and sequence ranges Author chain Lh; PDBConstruct 1–123; UniProt 1–123

60S ribosomal protein L23a

OrganismNot specified

UniProt P62750

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 14 RNA 2 5.8S rRNA × 1 Methionine aminopeptidase 1 × 1 (P53582) Transcription factor BTF3 × 1 (P20290) 28S rRNA × 1 Large ribosomal subunit protein uL24 × 1 (Q6IBH6) 60S ribosomal protein L35 × 1 (P42766) Nascent polypeptide-associated complex subunit alpha × 1 (Q13765) 60S ribosomal protein L22 × 1 (P35268) 60S ribosomal protein L19 × 1 (P84098) 60S ribosomal protein L38 × 1 (P63173) N-alpha-acetyltransferase 10 × 1 (P41227) N-alpha-acetyltransferase 15, NatA auxiliary subunit × 1 (Q9BXJ9) 60S ribosomal protein L4 × 1 (P36578) Large ribosomal subunit protein eL6 × 1 (Q02878) 60S ribosomal protein L28 × 1 (P46779) INOSITOL HEXAKISPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL23A_HUMAN
Isoform —
PDB entities 7
Chains and sequence ranges Author chain LX; PDBConstruct 1–156; UniProt 1–156

Nascent polypeptide-associated complex subunit alpha

Homo sapiens

UniProt Q13765

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 14 RNA 2 5.8S rRNA × 1 Methionine aminopeptidase 1 × 1 (P53582) Transcription factor BTF3 × 1 (P20290) 28S rRNA × 1 Large ribosomal subunit protein uL24 × 1 (Q6IBH6) 60S ribosomal protein L35 × 1 (P42766) 60S ribosomal protein L23a × 1 (P62750) 60S ribosomal protein L22 × 1 (P35268) 60S ribosomal protein L19 × 1 (P84098) 60S ribosomal protein L38 × 1 (P63173) N-alpha-acetyltransferase 10 × 1 (P41227) N-alpha-acetyltransferase 15, NatA auxiliary subunit × 1 (Q9BXJ9) 60S ribosomal protein L4 × 1 (P36578) Large ribosomal subunit protein eL6 × 1 (Q02878) 60S ribosomal protein L28 × 1 (P46779) INOSITOL HEXAKISPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NACA_HUMAN
Isoform —
PDB entities 8
Chains and sequence ranges Author chain A; PDBConstruct 7–221; UniProt 1–215

60S ribosomal protein L22

OrganismNot specified

UniProt P35268

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 14 RNA 2 5.8S rRNA × 1 Methionine aminopeptidase 1 × 1 (P53582) Transcription factor BTF3 × 1 (P20290) 28S rRNA × 1 Large ribosomal subunit protein uL24 × 1 (Q6IBH6) 60S ribosomal protein L35 × 1 (P42766) 60S ribosomal protein L23a × 1 (P62750) Nascent polypeptide-associated complex subunit alpha × 1 (Q13765) 60S ribosomal protein L19 × 1 (P84098) 60S ribosomal protein L38 × 1 (P63173) N-alpha-acetyltransferase 10 × 1 (P41227) N-alpha-acetyltransferase 15, NatA auxiliary subunit × 1 (Q9BXJ9) 60S ribosomal protein L4 × 1 (P36578) Large ribosomal subunit protein eL6 × 1 (Q02878) 60S ribosomal protein L28 × 1 (P46779) INOSITOL HEXAKISPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL22_HUMAN
Isoform —
PDB entities 9
Chains and sequence ranges Author chain LU; PDBConstruct 1–128; UniProt 1–128

60S ribosomal protein L19

OrganismNot specified

UniProt P84098

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 14 RNA 2 5.8S rRNA × 1 Methionine aminopeptidase 1 × 1 (P53582) Transcription factor BTF3 × 1 (P20290) 28S rRNA × 1 Large ribosomal subunit protein uL24 × 1 (Q6IBH6) 60S ribosomal protein L35 × 1 (P42766) 60S ribosomal protein L23a × 1 (P62750) Nascent polypeptide-associated complex subunit alpha × 1 (Q13765) 60S ribosomal protein L22 × 1 (P35268) 60S ribosomal protein L38 × 1 (P63173) N-alpha-acetyltransferase 10 × 1 (P41227) N-alpha-acetyltransferase 15, NatA auxiliary subunit × 1 (Q9BXJ9) 60S ribosomal protein L4 × 1 (P36578) Large ribosomal subunit protein eL6 × 1 (Q02878) 60S ribosomal protein L28 × 1 (P46779) INOSITOL HEXAKISPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL19_HUMAN
Isoform —
PDB entities 10
Chains and sequence ranges Author chain LR; PDBConstruct 1–196; UniProt 1–196

60S ribosomal protein L38

OrganismNot specified

UniProt P63173

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 14 RNA 2 5.8S rRNA × 1 Methionine aminopeptidase 1 × 1 (P53582) Transcription factor BTF3 × 1 (P20290) 28S rRNA × 1 Large ribosomal subunit protein uL24 × 1 (Q6IBH6) 60S ribosomal protein L35 × 1 (P42766) 60S ribosomal protein L23a × 1 (P62750) Nascent polypeptide-associated complex subunit alpha × 1 (Q13765) 60S ribosomal protein L22 × 1 (P35268) 60S ribosomal protein L19 × 1 (P84098) N-alpha-acetyltransferase 10 × 1 (P41227) N-alpha-acetyltransferase 15, NatA auxiliary subunit × 1 (Q9BXJ9) 60S ribosomal protein L4 × 1 (P36578) Large ribosomal subunit protein eL6 × 1 (Q02878) 60S ribosomal protein L28 × 1 (P46779) INOSITOL HEXAKISPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL38_HUMAN
Isoform —
PDB entities 11
Chains and sequence ranges Author chain Lk; PDBConstruct 1–70; UniProt 1–70

N-alpha-acetyltransferase 10

Homo sapiens

UniProt P41227

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 14 RNA 2 5.8S rRNA × 1 Methionine aminopeptidase 1 × 1 (P53582) Transcription factor BTF3 × 1 (P20290) 28S rRNA × 1 Large ribosomal subunit protein uL24 × 1 (Q6IBH6) 60S ribosomal protein L35 × 1 (P42766) 60S ribosomal protein L23a × 1 (P62750) Nascent polypeptide-associated complex subunit alpha × 1 (Q13765) 60S ribosomal protein L22 × 1 (P35268) 60S ribosomal protein L19 × 1 (P84098) 60S ribosomal protein L38 × 1 (P63173) N-alpha-acetyltransferase 15, NatA auxiliary subunit × 1 (Q9BXJ9) 60S ribosomal protein L4 × 1 (P36578) Large ribosomal subunit protein eL6 × 1 (Q02878) 60S ribosomal protein L28 × 1 (P46779) INOSITOL HEXAKISPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NAA10_HUMAN
Isoform —
PDB entities 12
Chains and sequence ranges Author chain 2; PDBConstruct 3–171; UniProt 2–170

N-alpha-acetyltransferase 15, NatA auxiliary subunit

Homo sapiens

UniProt Q9BXJ9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 14 RNA 2 5.8S rRNA × 1 Methionine aminopeptidase 1 × 1 (P53582) Transcription factor BTF3 × 1 (P20290) 28S rRNA × 1 Large ribosomal subunit protein uL24 × 1 (Q6IBH6) 60S ribosomal protein L35 × 1 (P42766) 60S ribosomal protein L23a × 1 (P62750) Nascent polypeptide-associated complex subunit alpha × 1 (Q13765) 60S ribosomal protein L22 × 1 (P35268) 60S ribosomal protein L19 × 1 (P84098) 60S ribosomal protein L38 × 1 (P63173) N-alpha-acetyltransferase 10 × 1 (P41227) 60S ribosomal protein L4 × 1 (P36578) Large ribosomal subunit protein eL6 × 1 (Q02878) 60S ribosomal protein L28 × 1 (P46779) INOSITOL HEXAKISPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NAA15_HUMAN
Isoform —
PDB entities 13
Chains and sequence ranges Author chain B; PDBConstruct 1–840; UniProt 1–841

60S ribosomal protein L4

OrganismNot specified

UniProt P36578

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 14 RNA 2 5.8S rRNA × 1 Methionine aminopeptidase 1 × 1 (P53582) Transcription factor BTF3 × 1 (P20290) 28S rRNA × 1 Large ribosomal subunit protein uL24 × 1 (Q6IBH6) 60S ribosomal protein L35 × 1 (P42766) 60S ribosomal protein L23a × 1 (P62750) Nascent polypeptide-associated complex subunit alpha × 1 (Q13765) 60S ribosomal protein L22 × 1 (P35268) 60S ribosomal protein L19 × 1 (P84098) 60S ribosomal protein L38 × 1 (P63173) N-alpha-acetyltransferase 10 × 1 (P41227) N-alpha-acetyltransferase 15, NatA auxiliary subunit × 1 (Q9BXJ9) Large ribosomal subunit protein eL6 × 1 (Q02878) 60S ribosomal protein L28 × 1 (P46779) INOSITOL HEXAKISPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL4_HUMAN
Isoform —
PDB entities 14
Chains and sequence ranges Author chain LC; PDBConstruct 1–427; UniProt 1–427

Large ribosomal subunit protein eL6

OrganismNot specified

UniProt Q02878

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 14 RNA 2 5.8S rRNA × 1 Methionine aminopeptidase 1 × 1 (P53582) Transcription factor BTF3 × 1 (P20290) 28S rRNA × 1 Large ribosomal subunit protein uL24 × 1 (Q6IBH6) 60S ribosomal protein L35 × 1 (P42766) 60S ribosomal protein L23a × 1 (P62750) Nascent polypeptide-associated complex subunit alpha × 1 (Q13765) 60S ribosomal protein L22 × 1 (P35268) 60S ribosomal protein L19 × 1 (P84098) 60S ribosomal protein L38 × 1 (P63173) N-alpha-acetyltransferase 10 × 1 (P41227) N-alpha-acetyltransferase 15, NatA auxiliary subunit × 1 (Q9BXJ9) 60S ribosomal protein L4 × 1 (P36578) 60S ribosomal protein L28 × 1 (P46779) INOSITOL HEXAKISPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL6_HUMAN
Isoform —
PDB entities 15
Chains and sequence ranges Author chain LE; PDBConstruct 1–288; UniProt 1–288

60S ribosomal protein L28

OrganismNot specified

UniProt P46779

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 14 RNA 2 5.8S rRNA × 1 Methionine aminopeptidase 1 × 1 (P53582) Transcription factor BTF3 × 1 (P20290) 28S rRNA × 1 Large ribosomal subunit protein uL24 × 1 (Q6IBH6) 60S ribosomal protein L35 × 1 (P42766) 60S ribosomal protein L23a × 1 (P62750) Nascent polypeptide-associated complex subunit alpha × 1 (Q13765) 60S ribosomal protein L22 × 1 (P35268) 60S ribosomal protein L19 × 1 (P84098) 60S ribosomal protein L38 × 1 (P63173) N-alpha-acetyltransferase 10 × 1 (P41227) N-alpha-acetyltransferase 15, NatA auxiliary subunit × 1 (Q9BXJ9) 60S ribosomal protein L4 × 1 (P36578) Large ribosomal subunit protein eL6 × 1 (Q02878) INOSITOL HEXAKISPHOSPHATE × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL28_HUMAN
Isoform —
PDB entities 16
Chains and sequence ranges Author chain Lr; PDBConstruct 1–137; UniProt 1–137

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

▼

2. Structure Basics 2. Structure Basics

Entry ID entry_id9fq0
Deposition date deposition_date2024-06-14
Structure title titleHuman NatA-NAC-MAP1 80S ribosome complex
Keywords keywords;co-translational processing, ribosome associated factor (RAF), methionine aminopeptidase 2 (MAP2), N-terminal methionine excision (NME), N-acetyl-transferase A (NatA), N-termional acetylation (NTA), UBA domain, a-solenoid, protein-protein and protein-RNA interactions, TRANSLATION ;; TRANSLATION
Experimental Method methodELECTRON MICROSCOPY
▼

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9fq0__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9fq0__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9fq0__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)68.88 Å
Rg (electron density)69.49 Å
Total Rg69.49 Å
Atom count31676
Residues3317
Excluded volume538690 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9fq0__assembly_1__model_1 hexadecameric (16) Success 4.1.3-1-20251215 (887e7ef) View Download
▶

4. Crystallography and Experiment 4. Crystallography & Experiment

▶

5. Entities and Polymers Entities & Polymers (17)

▶

7. Citations (1)