1gtf
The structure of the trp RNA-binding attenuation protein (TRAP) bound to a 53-nucleotide RNA molecule containing GAGUU repeats
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 1gtf |
| 沉积日期 deposition_date | 2002-01-15 |
| 结构标题 title | The structure of the trp RNA-binding attenuation protein (TRAP) bound to a 53-nucleotide RNA molecule containing GAGUU repeats |
| 关键词 keywords | RNA BINDING PROTEIN-RNA COMPLEX, TRANSCRIPTION ATTENUATION, RNA-BINDING PROTEIN, TRP RNA; RNA BINDING PROTEIN/RNA |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 36.13 Å |
| 回转半径 Rg (电子) rg_electron | 34.65 Å |
| 零角强度 I(0) i0 | 601405000.00 |
| 分子量 molecular_weight | 186780.0 kDa |
| 排除体积 excluded_volume | 228770 ų |
| 包络体积 envelope_volume | 291020 ų |
| 水化壳体积 shell_volume | 65724 ų |
| 包络直径 envelope_diameter | 100.0 Å |
| 壳层 Rg shell_rg | 44.75 Å |
| 包络 Rg envelope_rg | 33.62 Å |
| 形状 Rg shape_rg | 34.60 Å |
| 总 Rg total_rg | 35.41 Å |
| 总原子数 total_atoms | 13141 |
| 残基数 n_residues | 1571 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 99.7 Å |
| Rg (实空间) rg_real | 35.77 Å |
| Rg 误差 (实空间) rg_real_error | 0.41 Å |
| I(0) (实空间) i0_real | 6.0140e+08 |
| I(0) 误差 (实空间) i0_real_error | 8.1600e+06 |
| Rg (倒空间) rg_reciprocal | 35.99 Å |
| I(0) (倒空间) i0_reciprocal | 601500000.0000 |
| 解质量估计 total_estimate | 0.9039 |
| 解质量评级 solution_quality | EXCELLENT a EXCELLENT solution |
| P(r) 峰数 n_peaks | 2 |
| 主峰位置 r_peak_primary | 52.1 Å |
| 偏度 Skewness skewness | -0.118 |
| 峰度 Kurtosis kurtosis | -0.651 |
| 角度范围 angular_range | — – 0.2200 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 695000000.0000 |
| 实空间数据点数 n_real_points | 45 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.966; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.971; Smooth: 0.878 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (4)
6. 折叠分类 (SCOP + CATH) 44 domains
SCOP 2.08 (22 domains)
| 结构域编号 domain_id | d1gtfa_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtfb_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtfc_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtfd_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtfe_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtff_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtfg_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtfh_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtfi_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtfj_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtfk_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtfl_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtfm_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtfn_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtfo_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtfp_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtfq_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtfr_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtfs_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtft_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtfu_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtfv_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
CATH v4.4 (22 domains)
| 结构域编号 domain_id | 1gtfA00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtfB00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtfC00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtfD00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtfE00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtfF00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtfG00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtfH00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtfI00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtfJ00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtfK00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtfL00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtfM00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtfN00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtfO00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtfP00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtfQ00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtfR00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtfS00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtfT00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtfU00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtfV00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |