1gtn
Structure of the trp RNA-binding attenuation protein (TRAP) bound to an RNA molecule containing 11 GAGCC repeats
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 1gtn |
| 沉积日期 deposition_date | 2002-01-16 |
| 结构标题 title | Structure of the trp RNA-binding attenuation protein (TRAP) bound to an RNA molecule containing 11 GAGCC repeats |
| 关键词 keywords | RNA BINDING PROTEIN-RNA COMPLEX, TRANSCRIPTION ATTENUATION, RNA-BINDING PROTEIN, TRP RNA; RNA BINDING PROTEIN/RNA |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 36.19 Å |
| 回转半径 Rg (电子) rg_electron | 34.72 Å |
| 零角强度 I(0) i0 | 604365000.00 |
| 分子量 molecular_weight | 187140.0 kDa |
| 排除体积 excluded_volume | 229200 ų |
| 包络体积 envelope_volume | 293990 ų |
| 水化壳体积 shell_volume | 66102 ų |
| 包络直径 envelope_diameter | 100.1 Å |
| 壳层 Rg shell_rg | 44.87 Å |
| 包络 Rg envelope_rg | 33.76 Å |
| 形状 Rg shape_rg | 34.67 Å |
| 总 Rg total_rg | 35.48 Å |
| 总原子数 total_atoms | 13168 |
| 残基数 n_residues | 1573 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 101.5 Å |
| Rg (实空间) rg_real | 35.84 Å |
| Rg 误差 (实空间) rg_real_error | 0.37 Å |
| I(0) (实空间) i0_real | 6.0440e+08 |
| I(0) 误差 (实空间) i0_real_error | 8.2900e+06 |
| Rg (倒空间) rg_reciprocal | 36.06 Å |
| I(0) (倒空间) i0_reciprocal | 604500000.0000 |
| 解质量估计 total_estimate | 0.9077 |
| 解质量评级 solution_quality | EXCELLENT a EXCELLENT solution |
| P(r) 峰数 n_peaks | 1 |
| 主峰位置 r_peak_primary | 96.8 Å |
| 偏度 Skewness skewness | -0.114 |
| 峰度 Kurtosis kurtosis | -0.650 |
| 角度范围 angular_range | — – 0.2200 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 964000000.0000 |
| 实空间数据点数 n_real_points | 45 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.955; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.965; Smooth: 0.966 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (4)
6. 折叠分类 (SCOP + CATH) 44 domains
SCOP 2.08 (22 domains)
| 结构域编号 domain_id | d1gtna_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtnb_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtnc_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtnd_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtne_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtnf_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtng_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtnh_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtni_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtnj_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtnk_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtnl_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtnm_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtnn_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtno_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtnp_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtnq_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtnr_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtns_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtnt_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtnu_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1gtnv_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
CATH v4.4 (22 domains)
| 结构域编号 domain_id | 1gtnA00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtnB00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtnC00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtnD00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtnE00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtnF00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtnG00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtnH00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtnI00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtnJ00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtnK00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtnL00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtnM00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtnN00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtnO00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtnP00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtnQ00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtnR00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtnS00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtnT00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtnU00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1gtnV00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |