1qaw
;Regulatory Features of the TRP Operon and the Crystal Structure of the TRP RNA-Binding Attenuation Protein from Bacillus Stearothermophilus. ;
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 1qaw |
| 沉积日期 deposition_date | 1999-03-31 |
| 结构标题 title | ;Regulatory Features of the TRP Operon and the Crystal Structure of the TRP RNA-Binding Attenuation Protein from Bacillus Stearothermophilus. ; |
| 关键词 keywords | CIRCULAR ASSEMBLY, 11-FOLD SYMMETRY, RNA-BINDING PROTEIN, RNA BINDING PROTEIN; RNA BINDING PROTEIN |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 31.01 Å |
| 回转半径 Rg (电子) rg_electron | 29.89 Å |
| 零角强度 I(0) i0 | 115209000.00 |
| 分子量 molecular_weight | 84724.0 kDa |
| 排除体积 excluded_volume | 106170 ų |
| 包络体积 envelope_volume | 134050 ų |
| 水化壳体积 shell_volume | 35374 ų |
| 包络直径 envelope_diameter | 90.8 Å |
| 壳层 Rg shell_rg | 39.24 Å |
| 包络 Rg envelope_rg | 29.28 Å |
| 形状 Rg shape_rg | 29.86 Å |
| 总 Rg total_rg | 30.88 Å |
| 总原子数 total_atoms | 5992 |
| 残基数 n_residues | 749 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 88.4 Å |
| Rg (实空间) rg_real | 30.83 Å |
| Rg 误差 (实空间) rg_real_error | 0.46 Å |
| I(0) (实空间) i0_real | 1.1520e+08 |
| I(0) 误差 (实空间) i0_real_error | 1.7410e+06 |
| Rg (倒空间) rg_reciprocal | 30.91 Å |
| I(0) (倒空间) i0_reciprocal | 115200000.0000 |
| 解质量估计 total_estimate | 0.9086 |
| 解质量评级 solution_quality | EXCELLENT a EXCELLENT solution |
| P(r) 峰数 n_peaks | 2 |
| 主峰位置 r_peak_primary | 46.8 Å |
| 偏度 Skewness skewness | -0.001 |
| 峰度 Kurtosis kurtosis | -0.829 |
| 角度范围 angular_range | — – 0.2550 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 62780000.0000 |
| 实空间数据点数 n_real_points | 52 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.979; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.870 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (3)
6. 折叠分类 (SCOP + CATH) 22 domains
SCOP 2.08 (11 domains)
| 结构域编号 domain_id | d1qawa_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1qawb_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1qawc_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1qawd_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1qawe_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1qawf_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1qawg_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1qawh_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1qawi_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1qawj_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
| 结构域编号 domain_id | d1qawk_ |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.82 — Double-stranded beta-helix |
| 超家族 Superfamily superfamily | b.82.5 — TRAP-like |
| 家族 Family family | b.82.5.1 — Trp RNA-binding attenuation protein (TRAP) |
CATH v4.4 (11 domains)
| 结构域编号 domain_id | 1qawA00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1qawB00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1qawC00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1qawD00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1qawE00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1qawF00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1qawG00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1qawH00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1qawI00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1qawJ00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |
| 结构域编号 domain_id | 1qawK00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 50 — TRAP-like |