6wvf

E.coli DsbB C104S with ubiquinone

Method: X-RAY DIFFRACTION
▼

1. Protein Identity and Related Structures Protein Identity & Related Structures

Green fluorescent protein,Disulfide bond formation protein B,Green fluorescent protein

Aequorea victoria

UniProt P0A6M2

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Insufficient information Monomer Protein 1 UBIQUINONE-1 × 1 water × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name DSBB_ECOLI
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 143–304; UniProt 6–167

Green fluorescent protein,Disulfide bond formation protein B,Green fluorescent protein

Aequorea victoria

UniProt P42212

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Insufficient information Monomer Protein 1 UBIQUINONE-1 × 1 water × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name GFP_AEQVI
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–142; UniProt 1–144 Author chain A; PDBConstruct 305–390; UniProt 146–231

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

▼

2. Structure Basics 2. Structure Basics

Entry ID entry_id6wvf
Deposition date deposition_date2020-05-05
Structure title titleE.coli DsbB C104S with ubiquinone
Keywords keywordsDisulfide bond formation protein B(DsbB), Disulfide bond, Disulfide oxidoreductase, membrane protein; MEMBRANE PROTEIN
Experimental Method methodX-RAY DIFFRACTION
▼

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6wvf__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6wvf__assembly_1__model_1 | I(q)

10-2 10-1 105 106 107 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6wvf__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)29.07 Å
Rg (electron density)28.77 Å
Total Rg29.38 Å
Atom count3106
Residues386
Excluded volume55860 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6wvf__assembly_1__model_1 monomeric (1) Success 4.1.3-1-20251215 (887e7ef) View Download
▶

4. Crystallography and Experiment 4. Crystallography & Experiment

▶

5. Entities and Polymers Entities & Polymers (3)

▼

6. Fold Classification (SCOP + CATH) 1 domains

CATH v4.4 (1 domains)

Domain ID domain_id6wvfA01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1550 — Bromodomain-like
Homologous superfamily homologous superfamily10 — DsbB-like
▶

7. Citations (1)