SAXSdb — 8r5a

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1. Protein Identity and Related Structures Protein Identity & Related Structures

Transcription attenuation protein MtrB

Geobacillus stearothermophilus

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein homooligomer	Homooligomer	Protein 264	COBALT (II) ION × 120	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	MTRB_GEOSE
Isoform	—
PDB entities	1
Chains and sequence ranges	Author chain 0； PDBConstruct 1–74； UniProt 1–74 Author chain 0A； PDBConstruct 1–74； UniProt 1–74 Author chain 0B； PDBConstruct 1–74； UniProt 1–74 Author chain 0C； PDBConstruct 1–74； UniProt 1–74 Author chain 1； PDBConstruct 1–74； UniProt 1–74 Author chain 1A； PDBConstruct 1–74； UniProt 1–74 Author chain 1B； PDBConstruct 1–74； UniProt 1–74 Author chain 1C； PDBConstruct 1–74； UniProt 1–74 Author chain 2； PDBConstruct 1–74； UniProt 1–74 Author chain 2A； PDBConstruct 1–74； UniProt 1–74 Author chain 2B； PDBConstruct 1–74； UniProt 1–74 Author chain 2C； PDBConstruct 1–74； UniProt 1–74 Author chain 3； PDBConstruct 1–74； UniProt 1–74 Author chain 3A； PDBConstruct 1–74； UniProt 1–74 Author chain 3B； PDBConstruct 1–74； UniProt 1–74 Author chain 3C； PDBConstruct 1–74； UniProt 1–74 Author chain 4； PDBConstruct 1–74； UniProt 1–74 Author chain 4A； PDBConstruct 1–74； UniProt 1–74 Author chain 4B； PDBConstruct 1–74； UniProt 1–74 Author chain 4C； PDBConstruct 1–74； UniProt 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The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id	8r5a
Deposition date deposition_date	2023-11-16
Structure title title	Structure of the Co(II) triggered TRAP (S33HK35H) protein cage (dextro form)
Keywords keywords	TRAP protein, protein cage, VIRUS LIKE PARTICLE; VIRUS LIKE PARTICLE
Experimental Method method	ELECTRON MICROSCOPY

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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

8r5a__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

8r5a__assembly_1__model_1 | I(q)

100 plotted points; both axes use logarithmic scales.

8r5a__assembly_1__model_1 | P(r) · Pending

P(r) will be calculated and displayed separately for the same assembly/model.

Rg（Guinier）	0.00 Å
Rg (electron density)	107.20 Å
Total Rg	107.40 Å
Atom count	144528
Residues	18480
Excluded volume	2537200 Å³
Maximum q	0.500 Å⁻¹

Assembly	Model	Structure unit	Oligomeric description	Status	CRYSOL	Actions
1	1	`8r5a__assembly_1__model_1`	264-meric （264）	Success	4.1.3-1-20251215 (887e7ef)	View Download

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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

Entity 1 Entity 1 polymer

Description description	Transcription attenuation protein MtrB
Molecular weight formula_weight	8317.4 kDa
Mutation mutation	S33H,K35H
Source method src_method	man
Copy count entity_count	264

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	;A,L,M,N,O,P,Q,R,S,T,U,V,W,Y,Z,a,b,c,d,e,f,g,h,i,B,j,k,l,m,n,o,p,q,r,s,t,u,v,w,x,y,z,0,1,2,3,4,5,C,6,7,8,9,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,D,TA,UA,VA,WA,XA,YA,ZA,aA,bA,cA,dA,eA,fA,gA,hA,iA,jA,kA,lA,mA,nA,oA,pA,E,qA,rA,sA,tA,uA,vA,wA,xA,yA,zA,0A,1A,2A,3A,4A,5A,6A,7A,8A,9A,AB,BB,CB,F,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,G,aB,bB,cB,dB,eB,fB,gB,hB,iB,jB,kB,lB,mB,nB,oB,pB,qB,rB,sB,tB,uB,vB,wB,H,xB,yB,zB,0B,1B,2B,3B,4B,5B,6B,7B,8B,9B,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,I,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,aC,bC,cC,dC,eC,fC,gC,J,hC,iC,jC,kC,lC,mC,nC,oC,pC,qC,rC,sC,tC,uC,vC,wC,xC,yC,zC,0C,1C,2C,3C,K,4C,5C,6C,7C,8C,9C,AD,BD,CD,DD,ED,FD,GD,HD,ID,JD,KD,LD,MD,ND,OD,PD,QD ;
Atom count atom_count	144528

MYTNSDFVVIKALEDGVNVIGLTRGADTRFHHHEHLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGKK

Source Source

Source organism organism	Geobacillus stearothermophilus
NCBI taxonomy ID ncbi_taxonomy_id	1422
Host organism host_organism	Escherichia coli

Entity 2 Entity 2 non-polymer

Description description	COBALT (II) ION
Molecular weight formula_weight	58.9 kDa
Source method src_method	syn
Copy count entity_count	120

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Unit-cell length a length_a	1.000 Å
Unit-cell length b length_b	1.000 Å
Unit-cell length c length_c	1.000 Å
Unit-cell angle α angle_alpha	90.00 °
Unit-cell angle β angle_beta	90.00 °
Unit-cell angle γ angle_gamma	90.00 °
Molecules per unit cell Z z_pdb	—

Space group space_group	P 1
Space-group number int_tables_number	1
Crystal system crystal_system	triclinic

Resolution resolution	2.84 Å
Resolution测定Method resolution_method	—
颗粒数 num_particles	161631

Structure of the Co(II) triggered TRAP (S33HK35H) protein cage (dextro form)

1. Protein Identity and Related Structures Protein Identity & Related Structures

Transcription attenuation protein MtrB

State in the Current Structure

Other States of the Same Protein in the Database

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

8r5a__assembly_1__model_1

8r5a__assembly_1__model_1 | I(q)

8r5a__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

冷冻电镜 EM 3D

5. Entities and Polymers Entities & Polymers (2)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

Entity 2 Entity 2 non-polymer

7. Citations (1)

Structure of the Co(II) triggered TRAP (S33HK35H) protein cage (dextro form)

1. Protein Identity and Related Structures Protein Identity & Related Structures

Transcription attenuation protein MtrB

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

8r5a__assembly_1__model_1

8r5a__assembly_1__model_1 | I(q)

8r5a__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

冷冻电镜 EM 3D

5. Entities and Polymers Entities & Polymers (2)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

Entity 2 Entity 2 non-polymer

7. Citations (1)