← Back to search
8xpm

Mature virion portal of phage lambda with DNA

Method: ELECTRON MICROSCOPY Dmax: 374.2 Å Quality: GOOD
▼

1. Protein Identity and Related Structures Protein Identity & Related Structures

Portal protein B

OrganismNot specified

UniProt P03710

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–DNA Heteromer Protein × 66 DNA 2 PDB declaration: 68-meric（68） Consistent with all polymer counts Chain B； UniProt 1–533 Chain B1； UniProt 1–533 Chain B2； UniProt 1–533 Chain B3； UniProt 1–533 Chain B4； UniProt 1–533 Chain B5； UniProt 1–533 Chain b； UniProt 1–533 Chain b1； UniProt 1–533 Chain b2； UniProt 1–533 Chain b3； UniProt 1–533 Chain b4； UniProt 1–533 Chain b5； UniProt 1–533 Not recorded Tail tube protein × 30 （P03733） Tail tube terminator protein × 6 （P03732） Head completion protein × 12 （P68660） DNA (104-MER) × 1 DNA (92-MER) × 1 Head-tail connector protein FII × 6 （P03714） ELECTRON MICROSCOPY cryo-EM buffer：pH 7 cryo-EM vitrification conditions：Cryogen NITROGEN Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8XPM Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8K38 The structure of bacteriophage lambda portal-adaptor Deposited 2023-07-14 Different oligomeric state Different experimental conditions Different structure-quality metrics Assembly 1 Protein heterocomplex Heteromer；Protein × 24 PDB declaration: 24-meric
Chain A 1–533（533 aa）
Chain B 1–533（533 aa）
Chain C 1–533（533 aa）
Chain D 1–533（533 aa）
Chain E 1–533（533 aa）
Chain F 1–533（533 aa）
Chain G 1–533（533 aa）
Chain H 1–533（533 aa）
Chain I 1–533（533 aa）
Chain J 1–533（533 aa）
Chain K 1–533（533 aa）
Chain L 1–533（533 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.20 Å
8K39 Structure of the bacteriophage lambda portal vertex Deposited 2023-07-14 Different oligomeric state Different experimental conditions Different structure-quality metrics Assembly 1 Protein heterocomplex Heteromer；Protein × 42 PDB declaration: 42-meric
Chain U 1–533（533 aa）
Chain V 1–533（533 aa）
Chain W 1–533（533 aa）
Chain X 1–533（533 aa）
Chain Y 1–533（533 aa）
Chain Z 1–533（533 aa）
Chain a 1–533（533 aa）
Chain b 1–533（533 aa）
Chain c 1–533（533 aa）
Chain d 1–533（533 aa）
Chain e 1–533（533 aa）
Chain f 1–533（533 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 4.00 Å
8XOT Prohead portal of bacteriophage lambda Deposited 2024-01-02 Different oligomeric state Different structure-quality metrics Assembly 1 Protein homooligomer Homooligomer；Protein × 12 PDB declaration: 12-meric
Chain B 1–533（533 aa）
Chain B1 1–533（533 aa）
Chain B2 1–533（533 aa）
Chain B3 1–533（533 aa）
Chain B4 1–533（533 aa）
Chain B5 1–533（533 aa）
Chain b 1–533（533 aa）
Chain b1 1–533（533 aa）
Chain b2 1–533（533 aa）
Chain b3 1–533（533 aa）
Chain b4 1–533（533 aa）
Chain b5 1–533（533 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen NITROGEN
Resolution 3.51 Å
8XOU Prohead portal vertex of bacteriophage lambda Deposited 2024-01-02 Different oligomeric state Different structure-quality metrics Assembly 1 Protein heterocomplex Heteromer；Protein × 42 PDB declaration: 42-meric
Chain B 1–533（533 aa）
Chain B1 1–533（533 aa）
Chain B2 1–533（533 aa）
Chain B3 1–533（533 aa）
Chain B4 1–533（533 aa）
Chain B5 1–533（533 aa）
Chain b 1–533（533 aa）
Chain b1 1–533（533 aa）
Chain b2 1–533（533 aa）
Chain b3 1–533（533 aa）
Chain b4 1–533（533 aa）
Chain b5 1–533（533 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen NITROGEN
Resolution 5.58 Å
8XOW Mature virion portal of bacteriophage lambda Deposited 2024-01-02 Different oligomeric state Different structure-quality metrics Assembly 1 Protein heterocomplex Heteromer；Protein × 36 PDB declaration: 36-meric
Chain B 1–533（533 aa）
Chain B1 1–533（533 aa）
Chain B2 1–533（533 aa）
Chain B3 1–533（533 aa）
Chain B4 1–533（533 aa）
Chain B5 1–533（533 aa）
Chain b 1–533（533 aa）
Chain b1 1–533（533 aa）
Chain b2 1–533（533 aa）
Chain b3 1–533（533 aa）
Chain b4 1–533（533 aa）
Chain b5 1–533（533 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen NITROGEN
Resolution 3.32 Å
8XQB Mature virion portal vertex of bacteriophage lambda Deposited 2024-01-05 Different oligomeric state Different structure-quality metrics Assembly 1 Protein heterocomplex Heteromer；Protein × 71 PDB declaration: 71-meric
Chain B 1–533（533 aa）
Chain B1 1–533（533 aa）
Chain B2 1–533（533 aa）
Chain B3 1–533（533 aa）
Chain B4 1–533（533 aa）
Chain B5 1–533（533 aa）
Chain b 1–533（533 aa）
Chain b1 1–533（533 aa）
Chain b2 1–533（533 aa）
Chain b3 1–533（533 aa）
Chain b4 1–533（533 aa）
Chain b5 1–533（533 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen NITROGEN
Resolution 4.07 Å

6 other PDB entries and 6 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name PORTL_LAMBD
Isoform —
PDB entities 1
Chains and sequence ranges Author chain B； PDBConstruct 1–533； UniProt 1–533 Author chain B1； PDBConstruct 1–533； UniProt 1–533 Author chain B2； PDBConstruct 1–533； UniProt 1–533 Author chain B3； PDBConstruct 1–533； UniProt 1–533 Author chain B4； PDBConstruct 1–533； UniProt 1–533 Author chain B5； PDBConstruct 1–533； UniProt 1–533 Author chain b； PDBConstruct 1–533； UniProt 1–533 Author chain b1； PDBConstruct 1–533； UniProt 1–533 Author chain b2； PDBConstruct 1–533； UniProt 1–533 Author chain b3； PDBConstruct 1–533； UniProt 1–533 Author chain b4； PDBConstruct 1–533； UniProt 1–533 Author chain b5； PDBConstruct 1–533； UniProt 1–533

Tail tube protein

OrganismNot specified

UniProt P03733

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–DNA Heteromer Protein × 66 DNA 2 PDB declaration: 68-meric（68） Consistent with all polymer counts Chain O； UniProt 1–246 Chain O1； UniProt 1–246 Chain O2； UniProt 1–246 Chain P； UniProt 1–246 Chain P1； UniProt 1–246 Chain P2； UniProt 1–246 Chain Q； UniProt 1–246 Chain Q1； UniProt 1–246 Chain Q2； UniProt 1–246 Chain R； UniProt 1–246 Chain R1； UniProt 1–246 Chain R2； UniProt 1–246 Chain V； UniProt 1–246 Chain V1； UniProt 1–246 Chain V2； UniProt 1–246 Chain o； UniProt 1–246 Chain o1； UniProt 1–246 Chain o2； UniProt 1–246 Chain p； UniProt 1–246 Chain p1； UniProt 1–246 Chain p2； UniProt 1–246 Chain q； UniProt 1–246 Chain q1； UniProt 1–246 Chain q2； UniProt 1–246 Chain r； UniProt 1–246 Chain r1； UniProt 1–246 Chain r2； UniProt 1–246 Chain v； UniProt 1–246 Chain v1； UniProt 1–246 Chain v2； UniProt 1–246 Not recorded Portal protein B × 12 （P03710） Tail tube terminator protein × 6 （P03732） Head completion protein × 12 （P68660） DNA (104-MER) × 1 DNA (92-MER) × 1 Head-tail connector protein FII × 6 （P03714） ELECTRON MICROSCOPY cryo-EM buffer：pH 7 cryo-EM vitrification conditions：Cryogen NITROGEN Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8XPM Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
2K4Q The Solution Structure of gpV, the Major Tail Protein from Bacteriophage Lambda Deposited 2008-06-16 Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric
Chain A 1–153（153 aa）
Not recorded No recorded non-water small molecule SOLUTION NMR
NMR measurement conditions pH 6.8；293 K；Ionic strength (raw mmCIF value) 200；Pressure ambient
NMR sample composition 50 mM sodium phosphate, 0.6 mM DSS, 200 mM sodium chloride, 8-10 % D2O, 0.1% % sodium azide, 1 mM [U-100% 13C; U-100% 15N] gpV protein, 90% H2O/10% D2O | 90% H2O/10% D2O
NMR sample composition 1 mM [U-100% 13C; U-100% 15N] gpV protein, 90-99 % D2O, 0.6 mM DSS, 50 mM sodium phosphate, 200 mM sodium chloride, 0.1 % sodium azide, 90% D2O, 10% H2O | 90% D2O, 10% H2O
Resolution not provided
2L04 The Solution Structure of the C-terminal Ig-like Domain of the Bacteriophage Lambda Tail Tube Protein Deposited 2010-06-30 Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric
Chain A 160–246（87 aa） Fragment：C-terminal, UNP residues 160-246
Not recorded No recorded non-water small molecule SOLUTION NMR
NMR measurement conditions pH 6.8；298 K；Ionic strength (raw mmCIF value) .2；Pressure ambient
NMR sample composition 50 mM sodium phosphate-1, 200 mM sodium chloride-2, 90% H2O/10% D2O | 90% H2O/10% D2O
NMR sample composition 50 mM sodium phosphate-3, 200 mM sodium chloride-4, 100% D2O | 100% D2O
Resolution not provided
6P3E Mobile loops and electrostatic interactions maintain the flexible lambda tail tube Deposited 2019-05-23 Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics Assembly 1 Protein homooligomer Homooligomer；Protein × 18 PDB declaration: octadecameric
Chain A 1–246（246 aa）
Chain B 1–246（246 aa）
Chain C 1–246（246 aa）
Chain D 1–246（246 aa）
Chain E 1–246（246 aa）
Chain F 1–246（246 aa）
Chain G 1–246（246 aa）
Chain H 1–246（246 aa）
Chain I 1–246（246 aa）
Chain J 1–246（246 aa）
Chain K 1–246（246 aa）
Chain L 1–246（246 aa）
Chain M 1–246（246 aa）
Chain N 1–246（246 aa）
Chain O 1–246（246 aa）
Chain P 1–246（246 aa）
Chain Q 1–246（246 aa）
Chain R 1–246（246 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE-PROPANE
Resolution 5.40 Å
7T2E Structure of bacteriophage lambda tube protein V in C6 Deposited 2021-12-03 Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric
Chain A 2–157（156 aa）
Chain B 2–157（156 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.70 Å
7T4F Structure of bacteriophage lambda tube protein V in C3 Deposited 2021-12-09 Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics Assembly 1 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric
Chain A 2–246（245 aa）
Chain B 2–246（245 aa）
Chain C 2–246（245 aa）
Chain D 2–246（245 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.70 Å
8IYD Tail cap of phage lambda tail Deposited 2023-04-04 Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics Assembly 1 Protein heterocomplex Heteromer；Protein × 30 PDB declaration: 30-meric
Chain A 1–246（246 aa）
Chain B 1–246（246 aa）
Chain C 1–246（246 aa）
Chain D 1–246（246 aa）
Chain E 1–246（246 aa）
Chain F 1–246（246 aa）
Chain H 1–246（246 aa）
Chain I 1–246（246 aa）
Chain J 1–246（246 aa）
Chain L 1–246（246 aa）
Chain M 1–246（246 aa）
Chain N 1–246（246 aa）
Chain O 1–246（246 aa）
Chain P 1–246（246 aa）
Chain R 1–246（246 aa）
Chain S 1–246（246 aa）
Chain T 1–246（246 aa）
Chain V 1–246（246 aa）
Chain X 1–246（246 aa）
Chain Y 1–246（246 aa）
Chain a 1–246（246 aa）
Chain b 1–246（246 aa）
Chain c 1–246（246 aa）
Chain v 1–246（246 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen NITROGEN
Resolution 3.10 Å
8IYK Tail tip conformation 1 of phage lambda tail Deposited 2023-04-05 Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein heterocomplex Heteromer；Protein × 42 PDB declaration: 42-meric
Chain A 1–246（246 aa）
Chain B 1–246（246 aa）
Chain C 1–246（246 aa）
Chain D 1–246（246 aa）
Chain G 1–246（246 aa）
Chain Q 1–246（246 aa）
Chain R 1–246（246 aa）
Chain S 1–246（246 aa）
Chain T 1–246（246 aa）
Chain U 1–246（246 aa）
Chain V 1–246（246 aa）
Chain W 1–246（246 aa）
Chain X 1–246（246 aa）
Chain a 1–246（246 aa）
Chain b 1–246（246 aa）
Chain c 1–246（246 aa）
Chain d 1–246（246 aa）
Chain i 1–246（246 aa）
Chain j 1–246（246 aa）
Chain k 1–246（246 aa）
Chain l 1–246（246 aa）
Chain n 1–246（246 aa）
Chain o 1–246（246 aa）
Chain v 1–246（246 aa）
Not recorded SF4 IRON/SULFUR CLUSTER × 3 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen NITROGEN
Resolution 2.95 Å
8IYL Tail tip conformation 2 of phage lambda tail Deposited 2023-04-05 Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein heterocomplex Heteromer；Protein × 42 PDB declaration: 42-meric
Chain A 1–246（246 aa）
Chain B 1–246（246 aa）
Chain C 1–246（246 aa）
Chain O 1–246（246 aa）
Chain P 1–246（246 aa）
Chain Q 1–246（246 aa）
Chain R 1–246（246 aa）
Chain S 1–246（246 aa）
Chain T 1–246（246 aa）
Chain U 1–246（246 aa）
Chain V 1–246（246 aa）
Chain W 1–246（246 aa）
Chain a 1–246（246 aa）
Chain b 1–246（246 aa）
Chain c 1–246（246 aa）
Chain g 1–246（246 aa）
Chain h 1–246（246 aa）
Chain i 1–246（246 aa）
Chain j 1–246（246 aa）
Chain k 1–246（246 aa）
Chain l 1–246（246 aa）
Chain n 1–246（246 aa）
Chain o 1–246（246 aa）
Chain v 1–246（246 aa）
Not recorded SF4 IRON/SULFUR CLUSTER × 3 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen NITROGEN
Resolution 3.00 Å
8K35 Structure of the bacteriophage lambda tail tip complex Deposited 2023-07-14 Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein heterocomplex Heteromer；Protein × 24 PDB declaration: 24-meric
Chain L 1–246（246 aa）
Chain R 1–246（246 aa）
Chain T 1–246（246 aa）
Chain U 1–246（246 aa）
Chain V 1–246（246 aa）
Chain W 1–246（246 aa）
Not recorded SF4 IRON/SULFUR CLUSTER × 3 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.44 Å
8K36 Structure of the bacteriophage lambda tail tube Deposited 2023-07-14 Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics Assembly 1 Protein homooligomer Homooligomer；Protein × 12 PDB declaration: dodecameric
Chain A 1–246（246 aa）
Chain B 1–246（246 aa）
Chain C 1–246（246 aa）
Chain D 1–246（246 aa）
Chain E 1–246（246 aa）
Chain F 1–246（246 aa）
Chain G 1–246（246 aa）
Chain H 1–246（246 aa）
Chain I 1–246（246 aa）
Chain J 1–246（246 aa）
Chain K 1–246（246 aa）
Chain L 1–246（246 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.48 Å
8K37 Structure of the bacteriophage lambda neck Deposited 2023-07-14 Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics Assembly 1 Protein heterocomplex Heteromer；Protein × 18 PDB declaration: octadecameric
Chain G 1–246（246 aa）
Chain H 1–246（246 aa）
Chain I 1–246（246 aa）
Chain J 1–246（246 aa）
Chain K 1–246（246 aa）
Chain L 1–246（246 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.50 Å
8KGE Dimeric tail tube protein gpVs of bacteriophage lambda Deposited 2023-08-18 Different construct Different mutation/modification Different oligomeric state Different structure-quality metrics Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric
Chain V 1–246（246 aa）
Chain v 1–246（246 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen NITROGEN
Resolution 3.80 Å
9E7M In situ cryoEM structure of bacteriophage Ur-lambda tail tip complex Deposited 2024-11-03 Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein heterocomplex Heteromer；Protein × 36 PDB declaration: 36-meric
Chain Va 3–157（155 aa）
Chain Vb 3–157（155 aa）
Chain Vc 3–157（155 aa）
Chain Vd 3–157（155 aa）
Chain Ve 3–157（155 aa）
Chain Vf 3–157（155 aa）
Not recorded SF4 IRON/SULFUR CLUSTER × 3 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.6
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.37 Å

13 other PDB entries and 13 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name TUBE_LAMBD
Isoform —
PDB entities 2
Chains and sequence ranges Author chain O； PDBConstruct 1–246； UniProt 1–246 Author chain O1； PDBConstruct 1–246； UniProt 1–246 Author chain O2； PDBConstruct 1–246； UniProt 1–246 Author chain P； PDBConstruct 1–246； UniProt 1–246 Author chain P1； PDBConstruct 1–246； UniProt 1–246 Author chain P2； PDBConstruct 1–246； UniProt 1–246 Author chain Q； PDBConstruct 1–246； UniProt 1–246 Author chain Q1； PDBConstruct 1–246； UniProt 1–246 Author chain Q2； PDBConstruct 1–246； UniProt 1–246 Author chain R； PDBConstruct 1–246； UniProt 1–246 Author chain R1； PDBConstruct 1–246； UniProt 1–246 Author chain R2； PDBConstruct 1–246； UniProt 1–246 Author chain V； PDBConstruct 1–246； UniProt 1–246 Author chain V1； PDBConstruct 1–246； UniProt 1–246 Author chain V2； PDBConstruct 1–246； UniProt 1–246 Author chain o； PDBConstruct 1–246； UniProt 1–246 Author chain o1； PDBConstruct 1–246； UniProt 1–246 Author chain o2； PDBConstruct 1–246； UniProt 1–246 Author chain p； PDBConstruct 1–246； UniProt 1–246 Author chain p1； PDBConstruct 1–246； UniProt 1–246 Author chain p2； PDBConstruct 1–246； UniProt 1–246 Author chain q； PDBConstruct 1–246； UniProt 1–246 Author chain q1； PDBConstruct 1–246； UniProt 1–246 Author chain q2； PDBConstruct 1–246； UniProt 1–246 Author chain r； PDBConstruct 1–246； UniProt 1–246 Author chain r1； PDBConstruct 1–246； UniProt 1–246 Author chain r2； PDBConstruct 1–246； UniProt 1–246 Author chain v； PDBConstruct 1–246； UniProt 1–246 Author chain v1； PDBConstruct 1–246； UniProt 1–246 Author chain v2； PDBConstruct 1–246； UniProt 1–246

Tail tube terminator protein

OrganismNot specified

UniProt P03732

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–DNA Heteromer Protein × 66 DNA 2 PDB declaration: 68-meric（68） Consistent with all polymer counts Chain U； UniProt 1–131 Chain U1； UniProt 1–131 Chain U2； UniProt 1–131 Chain U3； UniProt 1–131 Chain U4； UniProt 1–131 Chain U5； UniProt 1–131 Not recorded Portal protein B × 12 （P03710） Tail tube protein × 30 （P03733） Head completion protein × 12 （P68660） DNA (104-MER) × 1 DNA (92-MER) × 1 Head-tail connector protein FII × 6 （P03714） ELECTRON MICROSCOPY cryo-EM buffer：pH 7 cryo-EM vitrification conditions：Cryogen NITROGEN Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8XPM Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
1Z1Z NMR structure of the gpu tail protein from lambda bacteriophage Deposited 2005-03-07 Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric
Chain A 1–131（131 aa）
Not recorded No recorded non-water small molecule SOLUTION NMR
NMR measurement conditions pH 7.8；293 K；Ionic strength (raw mmCIF value) 50 mM KCl；Pressure 1
NMR sample composition 0.9 mM gpU, U-15N,13C, 10 mM Tris-d11, pH 7.8, 50 mM potassium chloride, 0.02% sodium azide, 10% D2O, 90% H2O | 10% D2O, 90% H2O
Resolution not provided
3FZ2 Crystal structure of the tail terminator protein from phage lambda (gpU-D74A) Deposited 2009-01-23 Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics Assembly 1 Protein homooligomer Homooligomer；Protein × 6 PDB declaration: hexameric
Chain A 1–131（131 aa）
Chain B 1–131（131 aa）
Chain E 1–131（131 aa）
Chain F 1–131（131 aa）
Chain I 1–131（131 aa）
Chain K 1–131（131 aa）
Mutation：D74A Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：D74A Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：D74A Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：D74A Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：D74A Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：D74A Non-standard monomer：Yes (specific site not provided by mmCIF) SO4 SULFATE ION × 7 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；298 K；0.2M Di-ammonium tartrate, 2.2M Ammonium sulfate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Resolution 2.70 Å R-free 0.283
3FZ2 Crystal structure of the tail terminator protein from phage lambda (gpU-D74A) Deposited 2009-01-23 Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics Assembly 2 Protein homooligomer Homooligomer；Protein × 6 PDB declaration: hexameric
Chain C 1–131（131 aa）
Chain D 1–131（131 aa）
Chain G 1–131（131 aa）
Chain H 1–131（131 aa）
Chain J 1–131（131 aa）
Chain L 1–131（131 aa）
Mutation：D74A Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：D74A Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：D74A Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：D74A Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：D74A Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：D74A Non-standard monomer：Yes (specific site not provided by mmCIF) SO4 SULFATE ION × 6 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；298 K；0.2M Di-ammonium tartrate, 2.2M Ammonium sulfate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Resolution 2.70 Å R-free 0.283
3FZ2 Crystal structure of the tail terminator protein from phage lambda (gpU-D74A) Deposited 2009-01-23 Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics Assembly 3 Protein homooligomer Homooligomer；Protein × 12 PDB declaration: dodecameric
Chain A 1–131（131 aa）
Chain B 1–131（131 aa）
Chain C 1–131（131 aa）
Chain D 1–131（131 aa）
Chain E 1–131（131 aa）
Chain F 1–131（131 aa）
Chain G 1–131（131 aa）
Chain H 1–131（131 aa）
Chain I 1–131（131 aa）
Chain J 1–131（131 aa）
Chain K 1–131（131 aa）
Chain L 1–131（131 aa）
Mutation：D74A Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：D74A Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：D74A Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：D74A Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：D74A Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：D74A Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：D74A Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：D74A Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：D74A Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：D74A Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：D74A Non-standard monomer：Yes (specific site not provided by mmCIF) Mutation：D74A Non-standard monomer：Yes (specific site not provided by mmCIF) SO4 SULFATE ION × 13 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；298 K；0.2M Di-ammonium tartrate, 2.2M Ammonium sulfate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Resolution 2.70 Å R-free 0.283
3FZB Crystal structure of the tail terminator protein from phage lambda (gpU-WT) Deposited 2009-01-24 Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics Assembly 1 Protein homooligomer Homooligomer；Protein × 5 PDB declaration: pentameric
Chain A 1–131（131 aa）
Chain B 1–131（131 aa）
Chain F 1–131（131 aa）
Chain H 1–131（131 aa）
Chain I 1–131（131 aa）
Not recorded SO4 SULFATE ION × 2 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；298 K；0.2M Tri-sodium citrate, 2.2M Ammonium sulfate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Resolution 2.80 Å R-free 0.309
3FZB Crystal structure of the tail terminator protein from phage lambda (gpU-WT) Deposited 2009-01-24 Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics Assembly 2 Protein homooligomer Homooligomer；Protein × 5 PDB declaration: pentameric
Chain C 1–131（131 aa）
Chain D 1–131（131 aa）
Chain E 1–131（131 aa）
Chain G 1–131（131 aa）
Chain J 1–131（131 aa）
Not recorded SO4 SULFATE ION × 1 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；298 K；0.2M Tri-sodium citrate, 2.2M Ammonium sulfate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Resolution 2.80 Å R-free 0.309
8IYD Tail cap of phage lambda tail Deposited 2023-04-04 Different oligomeric state Different experimental conditions Different structure-quality metrics Assembly 1 Protein heterocomplex Heteromer；Protein × 30 PDB declaration: 30-meric
Chain G 1–131（131 aa）
Chain K 1–131（131 aa）
Chain Q 1–131（131 aa）
Chain U 1–131（131 aa）
Chain W 1–131（131 aa）
Chain u 1–131（131 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen NITROGEN
Resolution 3.10 Å
8K37 Structure of the bacteriophage lambda neck Deposited 2023-07-14 Different oligomeric state Different experimental conditions Different structure-quality metrics Assembly 1 Protein heterocomplex Heteromer；Protein × 18 PDB declaration: octadecameric
Chain A 1–131（131 aa）
Chain B 1–131（131 aa）
Chain C 1–131（131 aa）
Chain D 1–131（131 aa）
Chain E 1–131（131 aa）
Chain F 1–131（131 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.50 Å
8XOW Mature virion portal of bacteriophage lambda Deposited 2024-01-02 Different oligomeric state Different structure-quality metrics Assembly 1 Protein heterocomplex Heteromer；Protein × 36 PDB declaration: 36-meric
Chain U 1–131（131 aa）
Chain U1 1–131（131 aa）
Chain U2 1–131（131 aa）
Chain U3 1–131（131 aa）
Chain U4 1–131（131 aa）
Chain U5 1–131（131 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen NITROGEN
Resolution 3.32 Å
8XQB Mature virion portal vertex of bacteriophage lambda Deposited 2024-01-05 Different oligomeric state Different structure-quality metrics Assembly 1 Protein heterocomplex Heteromer；Protein × 71 PDB declaration: 71-meric
Chain U 1–131（131 aa）
Chain U1 1–131（131 aa）
Chain U2 1–131（131 aa）
Chain U3 1–131（131 aa）
Chain U4 1–131（131 aa）
Chain U5 1–131（131 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen NITROGEN
Resolution 4.07 Å

7 other PDB entries and 10 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name TTTP_LAMBD
Isoform —
PDB entities 3
Chains and sequence ranges Author chain U； PDBConstruct 1–131； UniProt 1–131 Author chain U1； PDBConstruct 1–131； UniProt 1–131 Author chain U2； PDBConstruct 1–131； UniProt 1–131 Author chain U3； PDBConstruct 1–131； UniProt 1–131 Author chain U4； PDBConstruct 1–131； UniProt 1–131 Author chain U5； PDBConstruct 1–131； UniProt 1–131

Head completion protein

OrganismNot specified

UniProt P68660

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–DNA Heteromer Protein × 66 DNA 2 PDB declaration: 68-meric（68） Consistent with all polymer counts Chain W； UniProt 1–68 Chain W1； UniProt 1–68 Chain W2； UniProt 1–68 Chain W3； UniProt 1–68 Chain W4； UniProt 1–68 Chain W5； UniProt 1–68 Chain w； UniProt 1–68 Chain w1； UniProt 1–68 Chain w2； UniProt 1–68 Chain w3； UniProt 1–68 Chain w4； UniProt 1–68 Chain w5； UniProt 1–68 Not recorded Portal protein B × 12 （P03710） Tail tube protein × 30 （P03733） Tail tube terminator protein × 6 （P03732） DNA (104-MER) × 1 DNA (92-MER) × 1 Head-tail connector protein FII × 6 （P03714） ELECTRON MICROSCOPY cryo-EM buffer：pH 7 cryo-EM vitrification conditions：Cryogen NITROGEN Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8XPM Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
1HYW SOLUTION STRUCTURE OF BACTERIOPHAGE LAMBDA GPW Deposited 2001-01-22 Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric
Chain A 1–68（68 aa）
Not recorded No recorded non-water small molecule SOLUTION NMR
NMR measurement conditions pH 6.5；298 K；Ionic strength (raw mmCIF value) 200mM NaCl；Pressure ambient
NMR sample composition 1.5mM gpW U-15N, 13C; 10mM phosphate buffer NA, 200mM NaCl,90% H2O,10% D2O | 90% H2O/10% D2O
Resolution not provided
8K38 The structure of bacteriophage lambda portal-adaptor Deposited 2023-07-14 Different oligomeric state Different experimental conditions Different structure-quality metrics Assembly 1 Protein heterocomplex Heteromer；Protein × 24 PDB declaration: 24-meric
Chain M 1–68（68 aa）
Chain N 1–68（68 aa）
Chain O 1–68（68 aa）
Chain P 1–68（68 aa）
Chain Q 1–68（68 aa）
Chain R 1–68（68 aa）
Chain S 1–68（68 aa）
Chain T 1–68（68 aa）
Chain U 1–68（68 aa）
Chain V 1–68（68 aa）
Chain W 1–68（68 aa）
Chain X 1–68（68 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.20 Å
8XOW Mature virion portal of bacteriophage lambda Deposited 2024-01-02 Different oligomeric state Different structure-quality metrics Assembly 1 Protein heterocomplex Heteromer；Protein × 36 PDB declaration: 36-meric
Chain W 1–68（68 aa）
Chain W1 1–68（68 aa）
Chain W2 1–68（68 aa）
Chain W3 1–68（68 aa）
Chain W4 1–68（68 aa）
Chain W5 1–68（68 aa）
Chain w 1–68（68 aa）
Chain w1 1–68（68 aa）
Chain w2 1–68（68 aa）
Chain w3 1–68（68 aa）
Chain w4 1–68（68 aa）
Chain w5 1–68（68 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen NITROGEN
Resolution 3.32 Å
8XQB Mature virion portal vertex of bacteriophage lambda Deposited 2024-01-05 Different oligomeric state Different structure-quality metrics Assembly 1 Protein heterocomplex Heteromer；Protein × 71 PDB declaration: 71-meric
Chain W 1–68（68 aa）
Chain W1 1–68（68 aa）
Chain W2 1–68（68 aa）
Chain W3 1–68（68 aa）
Chain W4 1–68（68 aa）
Chain W5 1–68（68 aa）
Chain w 1–68（68 aa）
Chain w1 1–68（68 aa）
Chain w2 1–68（68 aa）
Chain w3 1–68（68 aa）
Chain w4 1–68（68 aa）
Chain w5 1–68（68 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen NITROGEN
Resolution 4.07 Å

4 other PDB entries and 4 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name HCP_LAMBD
Isoform —
PDB entities 4
Chains and sequence ranges Author chain W； PDBConstruct 1–68； UniProt 1–68 Author chain W1； PDBConstruct 1–68； UniProt 1–68 Author chain W2； PDBConstruct 1–68； UniProt 1–68 Author chain W3； PDBConstruct 1–68； UniProt 1–68 Author chain W4； PDBConstruct 1–68； UniProt 1–68 Author chain W5； PDBConstruct 1–68； UniProt 1–68 Author chain w； PDBConstruct 1–68； UniProt 1–68 Author chain w1； PDBConstruct 1–68； UniProt 1–68 Author chain w2； PDBConstruct 1–68； UniProt 1–68 Author chain w3； PDBConstruct 1–68； UniProt 1–68 Author chain w4； PDBConstruct 1–68； UniProt 1–68 Author chain w5； PDBConstruct 1–68； UniProt 1–68

Head-tail connector protein FII

OrganismNot specified

UniProt P03714

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–DNA Heteromer Protein × 66 DNA 2 PDB declaration: 68-meric（68） Consistent with all polymer counts Chain f； UniProt 1–117 Chain f1； UniProt 1–117 Chain f2； UniProt 1–117 Chain f3； UniProt 1–117 Chain f4； UniProt 1–117 Chain f5； UniProt 1–117 Not recorded Portal protein B × 12 （P03710） Tail tube protein × 30 （P03733） Tail tube terminator protein × 6 （P03732） Head completion protein × 12 （P68660） DNA (104-MER) × 1 DNA (92-MER) × 1 ELECTRON MICROSCOPY cryo-EM buffer：pH 7 cryo-EM vitrification conditions：Cryogen NITROGEN Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8XPM Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
1K0H Solution structure of bacteriophage lambda gpFII Deposited 2001-09-19 Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric
Chain A 1–117（117 aa）
Not recorded No recorded non-water small molecule SOLUTION NMR
NMR measurement conditions pH 6.5；298 K；Ionic strength (raw mmCIF value) 200mM NaCl；Pressure ambient
NMR sample composition 1.3mM gpFII U-15N, 13C; 10MM PHOSPHATE BUFFER NA, 200MM NACL | 90% H2O/10% D2O
Resolution not provided
2KX4 Solution structure of Bacteriophage Lambda gpFII Deposited 2010-04-26 Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric
Chain A 1–117（117 aa）
Not recorded No recorded non-water small molecule SOLUTION NMR
NMR measurement conditions pH 7；298 K；Ionic strength (raw mmCIF value) 0.15；Pressure ambient
NMR sample composition 1.5 mM [U-100% 13C; U-100% 15N] gpFII, 90% H2O/10% D2O | 90% H2O/10% D2O
Resolution not provided
8K37 Structure of the bacteriophage lambda neck Deposited 2023-07-14 Different oligomeric state Different experimental conditions Different structure-quality metrics Assembly 1 Protein heterocomplex Heteromer；Protein × 18 PDB declaration: octadecameric
Chain M 1–117（117 aa）
Chain N 1–117（117 aa）
Chain O 1–117（117 aa）
Chain P 1–117（117 aa）
Chain Q 1–117（117 aa）
Chain R 1–117（117 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.50 Å
8XOW Mature virion portal of bacteriophage lambda Deposited 2024-01-02 Different oligomeric state Different structure-quality metrics Assembly 1 Protein heterocomplex Heteromer；Protein × 36 PDB declaration: 36-meric
Chain f 1–117（117 aa）
Chain f1 1–117（117 aa）
Chain f2 1–117（117 aa）
Chain f3 1–117（117 aa）
Chain f4 1–117（117 aa）
Chain f5 1–117（117 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen NITROGEN
Resolution 3.32 Å
8XQB Mature virion portal vertex of bacteriophage lambda Deposited 2024-01-05 Different oligomeric state Different structure-quality metrics Assembly 1 Protein heterocomplex Heteromer；Protein × 71 PDB declaration: 71-meric
Chain f 1–117（117 aa）
Chain f1 1–117（117 aa）
Chain f2 1–117（117 aa）
Chain f3 1–117（117 aa）
Chain f4 1–117（117 aa）
Chain f5 1–117（117 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen NITROGEN
Resolution 4.07 Å

5 other PDB entries and 5 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name FII_LAMBD
Isoform —
PDB entities 7
Chains and sequence ranges Author chain f； PDBConstruct 1–117； UniProt 1–117 Author chain f1； PDBConstruct 1–117； UniProt 1–117 Author chain f2； PDBConstruct 1–117； UniProt 1–117 Author chain f3； PDBConstruct 1–117； UniProt 1–117 Author chain f4； PDBConstruct 1–117； UniProt 1–117 Author chain f5； PDBConstruct 1–117； UniProt 1–117

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 8xpm

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 8xpm
Download Download
▼

2. Structure Basics 2. Structure Basics

Entry ID entry_id8xpm
Deposition date deposition_date2024-01-04
Structure title titleMature virion portal of phage lambda with DNA
Keywords keywords;Bacteriophage, caudovirales, siphoviridae, portal vertex, portal, capsid, connector/neck, tail, delivery device, B-DNA, VIRAL PROTEIN-DNA COMPLEX ;; VIRAL PROTEIN/DNA
Experimental Method methodELECTRON MICROSCOPY
▼

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier— Å
Radius of gyration Rg (electron density) rg_electron131.60 Å
Forward intensity I(0) i044631900000.00
Molecular weight molecular_weight1710600.0 kDa
Excluded volume excluded_volume2101700 ų
Envelope volume envelope_volume3607900 ų
Hydration-shell volume shell_volume253390 ų
Envelope diameter envelope_diameter423.0 Å
Shell Rg shell_rg82.90 Å
Envelope Rg envelope_rg130.40 Å
Shape Rg shape_rg131.70 Å
Total Rg total_rg131.10 Å
Total atoms total_atoms120109
Residues n_residues15448
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 Å−1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3
▼

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax374.2 Å
Rg (real space) rg_real123.90 Å
Rg uncertainty (real space) rg_real_error2.02 Å
I(0) (real space) i0_real4.3240e+10
I(0) uncertainty (real space) i0_real_error1.0130e+09
Rg (reciprocal space) rg_reciprocal102.00 Å
I(0) (reciprocal space) i0_reciprocal40860000000.0000
Solution quality estimate total_estimate0.8311
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary93.5 Å
Skewness Skewness skewness0.499
Kurtosis Kurtosis kurtosis-0.780
Angular range angular_range— – 0.0600 Å−1
Current regularization parameter α current_alpha1.1430
Highest regularization parameter α highest_alpha1239000000.0000
Real-space data points n_real_points13
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.001; Oscil: 0.643; Stabil: 0.945; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.042
▶

5. Crystallography and Experiment 5. Crystallography & Experiment

▶

6. Entities and Polymers Entities & Polymers (7)

▶

8. Citations (1)

▶

9. Files and Curves (10)