8yhq

Cryo-EM structure of Saccharomyces cerevisiae bc1 complex in pyraclostrobin-bound state

Method: ELECTRON MICROSCOPY Dmax: 182.3 Å Quality: GOOD

1. 蛋白身份与相关结构 Protein Identity & Related Structures

COR1 isoform 1

物种未注明

UniProt A0A6A5Q3X1

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 20 PDB 声明:eicosameric(20) 与蛋白拷贝数一致 链 A; UniProt 27–457 链 J; UniProt 27–457 未记录 Cytochrome b × 2 (A0A0G3F5W7) Cytochrome b-c1 complex subunit 2, mitochondrial × 2 (A0A6A5Q625) quinol--cytochrome-c reductase × 2 (A0A5B9RH60) Cytochrome b-c1 complex subunit Rieske, mitochondrial × 2 (A0A8H8ULJ0) QCR6 isoform 1 × 2 (A0A8H8ULB7) Cytochrome b-c1 complex subunit 7 × 2 (A0A6A5Q2H4) Cytochrome b-c1 complex subunit 8 × 2 (A0A6A5PU80) Cytochrome b-c1 complex subunit 9, mitochondrial × 2 (P22289) Cytochrome b-c1 complex subunit 10, mitochondrial × 2 (P37299) 6PH (1R)-2-(phosphonooxy)-1-[(tridecanoyloxy)methyl]ethyl pentadecanoate × 2 9PE (1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 6 8PE (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate × 2 CN5 (5S,11R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-4,6,10,12,16-pentaoxa-5,11-diphosphaoctadec-1-yl pentadecanoate × 1 UQ6 5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL × 2 A1D6K methyl ~{N}-[2-[[1-(4-chlorophenyl)pyrazol-3-yl]oxymethyl]phenyl]-~{N}-methoxy-carbamate × 2 7PH (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate × 2 CN3 (2R,5S,11R,14R)-5,8,11-trihydroxy-2-(nonanoyloxy)-5,11-dioxido-16-oxo-14-[(propanoyloxy)methyl]-4,6,10,12,15-pentaoxa-5,11-diphosphanonadec-1-yl undecanoate × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.4;PBS,0.1%DDM cryo-EM玻璃化条件:冷冻剂 ETHANE 分辨率 2.42 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 6 个其他 PDB 条目、6 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 A0A6A5Q3X1_YEASX
Isoform
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–431; UniProt 27–457 作者链 J; PDB构建体 1–431; UniProt 27–457

Cytochrome b

物种未注明

UniProt A0A0G3F5W7

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 20 PDB 声明:eicosameric(20) 与蛋白拷贝数一致 链 C; UniProt 1–385 链 L; UniProt 1–385 未记录 COR1 isoform 1 × 2 (A0A6A5Q3X1) Cytochrome b-c1 complex subunit 2, mitochondrial × 2 (A0A6A5Q625) quinol--cytochrome-c reductase × 2 (A0A5B9RH60) Cytochrome b-c1 complex subunit Rieske, mitochondrial × 2 (A0A8H8ULJ0) QCR6 isoform 1 × 2 (A0A8H8ULB7) Cytochrome b-c1 complex subunit 7 × 2 (A0A6A5Q2H4) Cytochrome b-c1 complex subunit 8 × 2 (A0A6A5PU80) Cytochrome b-c1 complex subunit 9, mitochondrial × 2 (P22289) Cytochrome b-c1 complex subunit 10, mitochondrial × 2 (P37299) 6PH (1R)-2-(phosphonooxy)-1-[(tridecanoyloxy)methyl]ethyl pentadecanoate × 2 9PE (1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 6 8PE (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate × 2 CN5 (5S,11R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-4,6,10,12,16-pentaoxa-5,11-diphosphaoctadec-1-yl pentadecanoate × 1 UQ6 5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL × 2 A1D6K methyl ~{N}-[2-[[1-(4-chlorophenyl)pyrazol-3-yl]oxymethyl]phenyl]-~{N}-methoxy-carbamate × 2 7PH (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate × 2 CN3 (2R,5S,11R,14R)-5,8,11-trihydroxy-2-(nonanoyloxy)-5,11-dioxido-16-oxo-14-[(propanoyloxy)methyl]-4,6,10,12,15-pentaoxa-5,11-diphosphanonadec-1-yl undecanoate × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.4;PBS,0.1%DDM cryo-EM玻璃化条件:冷冻剂 ETHANE 分辨率 2.42 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 6 个其他 PDB 条目、6 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 A0A0G3F5W7_YEASX
Isoform
PDB实体 2
链与序列区间 作者链 C; PDB构建体 1–385; UniProt 1–385 作者链 L; PDB构建体 1–385; UniProt 1–385

Cytochrome b-c1 complex subunit 2, mitochondrial

物种未注明

UniProt A0A6A5Q625

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 20 PDB 声明:eicosameric(20) 与蛋白拷贝数一致 链 B; UniProt 17–368 链 K; UniProt 17–368 未记录 COR1 isoform 1 × 2 (A0A6A5Q3X1) Cytochrome b × 2 (A0A0G3F5W7) quinol--cytochrome-c reductase × 2 (A0A5B9RH60) Cytochrome b-c1 complex subunit Rieske, mitochondrial × 2 (A0A8H8ULJ0) QCR6 isoform 1 × 2 (A0A8H8ULB7) Cytochrome b-c1 complex subunit 7 × 2 (A0A6A5Q2H4) Cytochrome b-c1 complex subunit 8 × 2 (A0A6A5PU80) Cytochrome b-c1 complex subunit 9, mitochondrial × 2 (P22289) Cytochrome b-c1 complex subunit 10, mitochondrial × 2 (P37299) 6PH (1R)-2-(phosphonooxy)-1-[(tridecanoyloxy)methyl]ethyl pentadecanoate × 2 9PE (1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 6 8PE (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate × 2 CN5 (5S,11R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-4,6,10,12,16-pentaoxa-5,11-diphosphaoctadec-1-yl pentadecanoate × 1 UQ6 5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL × 2 A1D6K methyl ~{N}-[2-[[1-(4-chlorophenyl)pyrazol-3-yl]oxymethyl]phenyl]-~{N}-methoxy-carbamate × 2 7PH (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate × 2 CN3 (2R,5S,11R,14R)-5,8,11-trihydroxy-2-(nonanoyloxy)-5,11-dioxido-16-oxo-14-[(propanoyloxy)methyl]-4,6,10,12,15-pentaoxa-5,11-diphosphanonadec-1-yl undecanoate × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.4;PBS,0.1%DDM cryo-EM玻璃化条件:冷冻剂 ETHANE 分辨率 2.42 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 6 个其他 PDB 条目、6 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 A0A6A5Q625_YEASX
Isoform
PDB实体 3
链与序列区间 作者链 B; PDB构建体 1–352; UniProt 17–368 作者链 K; PDB构建体 1–352; UniProt 17–368

quinol--cytochrome-c reductase

物种未注明

UniProt A0A5B9RH60

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 20 PDB 声明:eicosameric(20) 与蛋白拷贝数一致 链 D; UniProt 62–309 链 M; UniProt 62–309 未记录 COR1 isoform 1 × 2 (A0A6A5Q3X1) Cytochrome b × 2 (A0A0G3F5W7) Cytochrome b-c1 complex subunit 2, mitochondrial × 2 (A0A6A5Q625) Cytochrome b-c1 complex subunit Rieske, mitochondrial × 2 (A0A8H8ULJ0) QCR6 isoform 1 × 2 (A0A8H8ULB7) Cytochrome b-c1 complex subunit 7 × 2 (A0A6A5Q2H4) Cytochrome b-c1 complex subunit 8 × 2 (A0A6A5PU80) Cytochrome b-c1 complex subunit 9, mitochondrial × 2 (P22289) Cytochrome b-c1 complex subunit 10, mitochondrial × 2 (P37299) 6PH (1R)-2-(phosphonooxy)-1-[(tridecanoyloxy)methyl]ethyl pentadecanoate × 2 9PE (1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 6 8PE (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate × 2 CN5 (5S,11R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-4,6,10,12,16-pentaoxa-5,11-diphosphaoctadec-1-yl pentadecanoate × 1 UQ6 5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL × 2 A1D6K methyl ~{N}-[2-[[1-(4-chlorophenyl)pyrazol-3-yl]oxymethyl]phenyl]-~{N}-methoxy-carbamate × 2 7PH (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate × 2 CN3 (2R,5S,11R,14R)-5,8,11-trihydroxy-2-(nonanoyloxy)-5,11-dioxido-16-oxo-14-[(propanoyloxy)methyl]-4,6,10,12,15-pentaoxa-5,11-diphosphanonadec-1-yl undecanoate × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.4;PBS,0.1%DDM cryo-EM玻璃化条件:冷冻剂 ETHANE 分辨率 2.42 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 6 个其他 PDB 条目、6 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 A0A5B9RH60_YEASX
Isoform
PDB实体 4
链与序列区间 作者链 D; PDB构建体 1–248; UniProt 62–309 作者链 M; PDB构建体 1–248; UniProt 62–309

Cytochrome b-c1 complex subunit Rieske, mitochondrial

物种未注明

UniProt A0A8H8ULJ0

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 20 PDB 声明:eicosameric(20) 与蛋白拷贝数一致 链 E; UniProt 31–215 链 N; UniProt 31–215 未记录 COR1 isoform 1 × 2 (A0A6A5Q3X1) Cytochrome b × 2 (A0A0G3F5W7) Cytochrome b-c1 complex subunit 2, mitochondrial × 2 (A0A6A5Q625) quinol--cytochrome-c reductase × 2 (A0A5B9RH60) QCR6 isoform 1 × 2 (A0A8H8ULB7) Cytochrome b-c1 complex subunit 7 × 2 (A0A6A5Q2H4) Cytochrome b-c1 complex subunit 8 × 2 (A0A6A5PU80) Cytochrome b-c1 complex subunit 9, mitochondrial × 2 (P22289) Cytochrome b-c1 complex subunit 10, mitochondrial × 2 (P37299) 6PH (1R)-2-(phosphonooxy)-1-[(tridecanoyloxy)methyl]ethyl pentadecanoate × 2 9PE (1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 6 8PE (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate × 2 CN5 (5S,11R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-4,6,10,12,16-pentaoxa-5,11-diphosphaoctadec-1-yl pentadecanoate × 1 UQ6 5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL × 2 A1D6K methyl ~{N}-[2-[[1-(4-chlorophenyl)pyrazol-3-yl]oxymethyl]phenyl]-~{N}-methoxy-carbamate × 2 7PH (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate × 2 CN3 (2R,5S,11R,14R)-5,8,11-trihydroxy-2-(nonanoyloxy)-5,11-dioxido-16-oxo-14-[(propanoyloxy)methyl]-4,6,10,12,15-pentaoxa-5,11-diphosphanonadec-1-yl undecanoate × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.4;PBS,0.1%DDM cryo-EM玻璃化条件:冷冻剂 ETHANE 分辨率 2.42 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 5 个其他 PDB 条目、5 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 A0A8H8ULJ0_YEASX
Isoform
PDB实体 5
链与序列区间 作者链 E; PDB构建体 1–185; UniProt 31–215 作者链 N; PDB构建体 1–185; UniProt 31–215

QCR6 isoform 1

物种未注明

UniProt A0A8H8ULB7

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 20 PDB 声明:eicosameric(20) 与蛋白拷贝数一致 链 F; UniProt 73–147 链 O; UniProt 73–147 未记录 COR1 isoform 1 × 2 (A0A6A5Q3X1) Cytochrome b × 2 (A0A0G3F5W7) Cytochrome b-c1 complex subunit 2, mitochondrial × 2 (A0A6A5Q625) quinol--cytochrome-c reductase × 2 (A0A5B9RH60) Cytochrome b-c1 complex subunit Rieske, mitochondrial × 2 (A0A8H8ULJ0) Cytochrome b-c1 complex subunit 7 × 2 (A0A6A5Q2H4) Cytochrome b-c1 complex subunit 8 × 2 (A0A6A5PU80) Cytochrome b-c1 complex subunit 9, mitochondrial × 2 (P22289) Cytochrome b-c1 complex subunit 10, mitochondrial × 2 (P37299) 6PH (1R)-2-(phosphonooxy)-1-[(tridecanoyloxy)methyl]ethyl pentadecanoate × 2 9PE (1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 6 8PE (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate × 2 CN5 (5S,11R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-4,6,10,12,16-pentaoxa-5,11-diphosphaoctadec-1-yl pentadecanoate × 1 UQ6 5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL × 2 A1D6K methyl ~{N}-[2-[[1-(4-chlorophenyl)pyrazol-3-yl]oxymethyl]phenyl]-~{N}-methoxy-carbamate × 2 7PH (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate × 2 CN3 (2R,5S,11R,14R)-5,8,11-trihydroxy-2-(nonanoyloxy)-5,11-dioxido-16-oxo-14-[(propanoyloxy)methyl]-4,6,10,12,15-pentaoxa-5,11-diphosphanonadec-1-yl undecanoate × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.4;PBS,0.1%DDM cryo-EM玻璃化条件:冷冻剂 ETHANE 分辨率 2.42 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 3 个其他 PDB 条目、3 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 A0A8H8ULB7_YEASX
Isoform
PDB实体 6
链与序列区间 作者链 F; PDB构建体 1–75; UniProt 73–147 作者链 O; PDB构建体 1–75; UniProt 73–147

Cytochrome b-c1 complex subunit 7

物种未注明

UniProt A0A6A5Q2H4

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 20 PDB 声明:eicosameric(20) 与蛋白拷贝数一致 链 G; UniProt 2–127 链 P; UniProt 2–127 未记录 COR1 isoform 1 × 2 (A0A6A5Q3X1) Cytochrome b × 2 (A0A0G3F5W7) Cytochrome b-c1 complex subunit 2, mitochondrial × 2 (A0A6A5Q625) quinol--cytochrome-c reductase × 2 (A0A5B9RH60) Cytochrome b-c1 complex subunit Rieske, mitochondrial × 2 (A0A8H8ULJ0) QCR6 isoform 1 × 2 (A0A8H8ULB7) Cytochrome b-c1 complex subunit 8 × 2 (A0A6A5PU80) Cytochrome b-c1 complex subunit 9, mitochondrial × 2 (P22289) Cytochrome b-c1 complex subunit 10, mitochondrial × 2 (P37299) 6PH (1R)-2-(phosphonooxy)-1-[(tridecanoyloxy)methyl]ethyl pentadecanoate × 2 9PE (1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 6 8PE (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate × 2 CN5 (5S,11R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-4,6,10,12,16-pentaoxa-5,11-diphosphaoctadec-1-yl pentadecanoate × 1 UQ6 5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL × 2 A1D6K methyl ~{N}-[2-[[1-(4-chlorophenyl)pyrazol-3-yl]oxymethyl]phenyl]-~{N}-methoxy-carbamate × 2 7PH (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate × 2 CN3 (2R,5S,11R,14R)-5,8,11-trihydroxy-2-(nonanoyloxy)-5,11-dioxido-16-oxo-14-[(propanoyloxy)methyl]-4,6,10,12,15-pentaoxa-5,11-diphosphanonadec-1-yl undecanoate × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.4;PBS,0.1%DDM cryo-EM玻璃化条件:冷冻剂 ETHANE 分辨率 2.42 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 6 个其他 PDB 条目、6 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 A0A6A5Q2H4_YEASX
Isoform
PDB实体 7
链与序列区间 作者链 G; PDB构建体 1–126; UniProt 2–127 作者链 P; PDB构建体 1–126; UniProt 2–127

Cytochrome b-c1 complex subunit 8

物种未注明

UniProt A0A6A5PU80

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 20 PDB 声明:eicosameric(20) 与蛋白拷贝数一致 链 H; UniProt 2–94 链 Q; UniProt 2–94 未记录 COR1 isoform 1 × 2 (A0A6A5Q3X1) Cytochrome b × 2 (A0A0G3F5W7) Cytochrome b-c1 complex subunit 2, mitochondrial × 2 (A0A6A5Q625) quinol--cytochrome-c reductase × 2 (A0A5B9RH60) Cytochrome b-c1 complex subunit Rieske, mitochondrial × 2 (A0A8H8ULJ0) QCR6 isoform 1 × 2 (A0A8H8ULB7) Cytochrome b-c1 complex subunit 7 × 2 (A0A6A5Q2H4) Cytochrome b-c1 complex subunit 9, mitochondrial × 2 (P22289) Cytochrome b-c1 complex subunit 10, mitochondrial × 2 (P37299) 6PH (1R)-2-(phosphonooxy)-1-[(tridecanoyloxy)methyl]ethyl pentadecanoate × 2 9PE (1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 6 8PE (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate × 2 CN5 (5S,11R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-4,6,10,12,16-pentaoxa-5,11-diphosphaoctadec-1-yl pentadecanoate × 1 UQ6 5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL × 2 A1D6K methyl ~{N}-[2-[[1-(4-chlorophenyl)pyrazol-3-yl]oxymethyl]phenyl]-~{N}-methoxy-carbamate × 2 7PH (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate × 2 CN3 (2R,5S,11R,14R)-5,8,11-trihydroxy-2-(nonanoyloxy)-5,11-dioxido-16-oxo-14-[(propanoyloxy)methyl]-4,6,10,12,15-pentaoxa-5,11-diphosphanonadec-1-yl undecanoate × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.4;PBS,0.1%DDM cryo-EM玻璃化条件:冷冻剂 ETHANE 分辨率 2.42 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 6 个其他 PDB 条目、6 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 A0A6A5PU80_YEASX
Isoform
PDB实体 8
链与序列区间 作者链 H; PDB构建体 1–93; UniProt 2–94 作者链 Q; PDB构建体 1–93; UniProt 2–94

Cytochrome b-c1 complex subunit 9, mitochondrial

物种未注明

UniProt P22289

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 20 PDB 声明:eicosameric(20) 与蛋白拷贝数一致 链 I; UniProt 4–58 链 R; UniProt 4–58 未记录 COR1 isoform 1 × 2 (A0A6A5Q3X1) Cytochrome b × 2 (A0A0G3F5W7) Cytochrome b-c1 complex subunit 2, mitochondrial × 2 (A0A6A5Q625) quinol--cytochrome-c reductase × 2 (A0A5B9RH60) Cytochrome b-c1 complex subunit Rieske, mitochondrial × 2 (A0A8H8ULJ0) QCR6 isoform 1 × 2 (A0A8H8ULB7) Cytochrome b-c1 complex subunit 7 × 2 (A0A6A5Q2H4) Cytochrome b-c1 complex subunit 8 × 2 (A0A6A5PU80) Cytochrome b-c1 complex subunit 10, mitochondrial × 2 (P37299) 6PH (1R)-2-(phosphonooxy)-1-[(tridecanoyloxy)methyl]ethyl pentadecanoate × 2 9PE (1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 6 8PE (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate × 2 CN5 (5S,11R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-4,6,10,12,16-pentaoxa-5,11-diphosphaoctadec-1-yl pentadecanoate × 1 UQ6 5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL × 2 A1D6K methyl ~{N}-[2-[[1-(4-chlorophenyl)pyrazol-3-yl]oxymethyl]phenyl]-~{N}-methoxy-carbamate × 2 7PH (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate × 2 CN3 (2R,5S,11R,14R)-5,8,11-trihydroxy-2-(nonanoyloxy)-5,11-dioxido-16-oxo-14-[(propanoyloxy)methyl]-4,6,10,12,15-pentaoxa-5,11-diphosphanonadec-1-yl undecanoate × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.4;PBS,0.1%DDM cryo-EM玻璃化条件:冷冻剂 ETHANE 分辨率 2.42 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 21 个其他 PDB 条目、21 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 QCR9_YEAST
Isoform
PDB实体 9
链与序列区间 作者链 I; PDB构建体 1–55; UniProt 4–58 作者链 R; PDB构建体 1–55; UniProt 4–58

Cytochrome b-c1 complex subunit 10, mitochondrial

物种未注明

UniProt P37299

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 20 PDB 声明:eicosameric(20) 与蛋白拷贝数一致 链 S; UniProt 10–61 链 T; UniProt 10–61 未记录 COR1 isoform 1 × 2 (A0A6A5Q3X1) Cytochrome b × 2 (A0A0G3F5W7) Cytochrome b-c1 complex subunit 2, mitochondrial × 2 (A0A6A5Q625) quinol--cytochrome-c reductase × 2 (A0A5B9RH60) Cytochrome b-c1 complex subunit Rieske, mitochondrial × 2 (A0A8H8ULJ0) QCR6 isoform 1 × 2 (A0A8H8ULB7) Cytochrome b-c1 complex subunit 7 × 2 (A0A6A5Q2H4) Cytochrome b-c1 complex subunit 8 × 2 (A0A6A5PU80) Cytochrome b-c1 complex subunit 9, mitochondrial × 2 (P22289) 6PH (1R)-2-(phosphonooxy)-1-[(tridecanoyloxy)methyl]ethyl pentadecanoate × 2 9PE (1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 6 8PE (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate × 2 CN5 (5S,11R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-4,6,10,12,16-pentaoxa-5,11-diphosphaoctadec-1-yl pentadecanoate × 1 UQ6 5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL × 2 A1D6K methyl ~{N}-[2-[[1-(4-chlorophenyl)pyrazol-3-yl]oxymethyl]phenyl]-~{N}-methoxy-carbamate × 2 7PH (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate × 2 CN3 (2R,5S,11R,14R)-5,8,11-trihydroxy-2-(nonanoyloxy)-5,11-dioxido-16-oxo-14-[(propanoyloxy)methyl]-4,6,10,12,15-pentaoxa-5,11-diphosphanonadec-1-yl undecanoate × 1 ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.4;PBS,0.1%DDM cryo-EM玻璃化条件:冷冻剂 ETHANE 分辨率 2.42 Å

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 12 个其他 PDB 条目、12 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 QCR10_YEAST
Isoform
PDB实体 10
链与序列区间 作者链 S; PDB构建体 1–52; UniProt 10–61 作者链 T; PDB构建体 1–52; UniProt 10–61

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

SAXS 散射曲线 SAXS Profile

SAXS profile for 8yhq

P(r) 距离分布 P(r) Distribution

P(r) distribution for 8yhq
下载 Download

2. 结构基本信息 2. Structure Basics

条目编号 entry_id8yhq
沉积日期 deposition_date2024-02-28
最后修订 last_revision2024-12-25
结构标题 titleCryo-EM structure of Saccharomyces cerevisiae bc1 complex in pyraclostrobin-bound state
关键词 keywordsComplex, mitochondria, ELECTRON TRANSPORT, MEMBRANE PROTEIN; MEMBRANE PROTEIN
实验方法 methodELECTRON MICROSCOPY

3. SAXS 参数 (CRYSOL 理论计算) 3. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier55.18
回转半径 Rg (电子) rg_electron54.49
零角强度 I(0) i05599730000.00
分子量 molecular_weight425990.0 kDa
排除体积 excluded_volume417310 ų
包络体积 envelope_volume866540 ų
水化壳体积 shell_volume128350 ų
包络直径 envelope_diameter171.9
壳层 Rg shell_rg60.33
包络 Rg envelope_rg53.55
形状 Rg shape_rg54.46
总 Rg total_rg54.66
总原子数 total_atoms32385
残基数 n_residues3992
球谐函数阶数 n_harmonics20
q 范围 q_range— – 0.5000 −1
数据点数 n_points101
壳层类型 shell_typedirectional
溶剂电子密度 solvent_density0.3340 e/ų
壳层衬度 contrast_shell0.0300 e/ų
CRYSOL 版本 crysol_version4.1.3

4. P(r) 距离分布 (GNOM 反演) 4. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax182.3
Rg (实空间) rg_real55.05
Rg 误差 (实空间) rg_real_error1.61
I(0) (实空间) i0_real5.6000e+09
I(0) 误差 (实空间) i0_real_error1.0990e+08
Rg (倒空间) rg_reciprocal55.27
I(0) (倒空间) i0_reciprocal5601000000.0000
解质量估计 total_estimate0.8782
解质量评级 solution_quality GOOD a GOOD solution
P(r) 峰数 n_peaks1
主峰位置 r_peak_primary65.1
偏度 Skewness skewness0.259
峰度 Kurtosis kurtosis-0.496
角度范围 angular_range— – 0.1400 −1
当前正则化参数 α current_alpha0.0000
最高正则化参数 α highest_alpha420000000.0000
实空间数据点数 n_real_points29
GNOM 版本 gnom_version4.1.3
质量判据 quality_criteria AN1: 0.000; Oscil: 0.863; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.985; Smooth: 0.837

5. 晶体学与实验 5. Crystallography & Experiment

6. 实体与聚合物信息 Entities & Polymers (19)

8. 引用文献 (1)

9. 文件与曲线 (10)