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8e7s

III2IV2 respiratory supercomplex from Saccharomyces cerevisiae with 4 bound UQ6

Method: ELECTRON MICROSCOPY Dmax: 208.2 Å Quality: EXCELLENT

SAXS 散射曲线 SAXS Profile

SAXS profile for 8e7s

P(r) 距离分布 P(r) Distribution

P(r) distribution for 8e7s
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1. 结构基本信息 1. Structure Basics

条目编号 entry_id8e7s
沉积日期 deposition_date2022-08-24
结构标题 titleIII2IV2 respiratory supercomplex from Saccharomyces cerevisiae with 4 bound UQ6
关键词 keywordsS.cerevisiae, respiratory supercomplex, cardiolipin, UQ6, OXIDOREDUCTASE; OXIDOREDUCTASE
实验方法 methodELECTRON MICROSCOPY
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2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier76.38 Å
回转半径 Rg (电子) rg_electron76.46 Å
零角强度 I(0) i09601490000.00
分子量 molecular_weight890880.0 kDa
排除体积 excluded_volume1137000 ų
包络体积 envelope_volume1718200 ų
水化壳体积 shell_volume190200 ų
包络直径 envelope_diameter288.7 Å
壳层 Rg shell_rg73.23 Å
包络 Rg envelope_rg75.84 Å
形状 Rg shape_rg76.52 Å
总 Rg total_rg76.17 Å
总原子数 total_atoms62847
残基数 n_residues7618
球谐函数阶数 n_harmonics20
q 范围 q_range— – 0.5000 Å−1
数据点数 n_points101
壳层类型 shell_typedirectional
溶剂电子密度 solvent_density0.3340 e/ų
壳层衬度 contrast_shell0.0300 e/ų
CRYSOL 版本 crysol_version4.1.3
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3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax208.2 Å
Rg (实空间) rg_real72.41 Å
Rg 误差 (实空间) rg_real_error0.72 Å
I(0) (实空间) i0_real9.2530e+09
I(0) 误差 (实空间) i0_real_error1.8210e+08
Rg (倒空间) rg_reciprocal75.13 Å
I(0) (倒空间) i0_reciprocal9570000000.0000
解质量估计 total_estimate0.9202
解质量评级 solution_quality EXCELLENT a EXCELLENT solution
P(r) 峰数 n_peaks2
主峰位置 r_peak_primary83.3 Å
偏度 Skewness skewness0.353
峰度 Kurtosis kurtosis-0.387
角度范围 angular_range— – 0.1000 Å−1
当前正则化参数 α current_alpha0.2491
最高正则化参数 α highest_alpha812100000.0000
实空间数据点数 n_real_points21
GNOM 版本 gnom_version4.1.3
质量判据 quality_criteria AN1: 0.000; Oscil: 0.974; Stabil: 0.986; Sysdev: 1.000; Positv: 1.000; Valcen: 0.978; Smooth: 0.148
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合体信息 (32)

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6. 折叠分类 (SCOP + CATH) 10 domains

CATH v4.4 (10 domains)

结构域编号 domain_id8e7sB01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology830 — Cytochrome Bc1 Complex; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — Metalloenzyme, LuxS/M16 peptidase-like
结构域编号 domain_id8e7sB02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology830 — Cytochrome Bc1 Complex; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — Metalloenzyme, LuxS/M16 peptidase-like
结构域编号 domain_id8e7sJ01
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology810 — Cytochrome Bc1 Complex; Chain C
同源超家族 H-superfamily homologous superfamily10 — Cytochrome Bc1 Complex; Chain C
结构域编号 domain_id8e7sK01
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology210 — Cytochrome C Oxidase; Chain A
同源超家族 H-superfamily homologous superfamily10 — Cytochrome c oxidase-like, subunit I domain
结构域编号 domain_id8e7sP01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily420 — Cupredoxins - blue copper proteins
结构域编号 domain_id8e7sb01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology830 — Cytochrome Bc1 Complex; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — Metalloenzyme, LuxS/M16 peptidase-like
结构域编号 domain_id8e7sb02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology830 — Cytochrome Bc1 Complex; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — Metalloenzyme, LuxS/M16 peptidase-like
结构域编号 domain_id8e7sj01
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology810 — Cytochrome Bc1 Complex; Chain C
同源超家族 H-superfamily homologous superfamily10 — Cytochrome Bc1 Complex; Chain C
结构域编号 domain_id8e7sk01
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology210 — Cytochrome C Oxidase; Chain A
同源超家族 H-superfamily homologous superfamily10 — Cytochrome c oxidase-like, subunit I domain
结构域编号 domain_id8e7sp01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily420 — Cupredoxins - blue copper proteins
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7. 引用文献 (1)

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8. 文件与曲线 (10)